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Published work

38 published item(s)

preprint2026arXiv

Low Rank Adaptation for Adversarial Perturbation

Low-Rank Adaptation (LoRA), which leverages the insight that model updates typically reside in a low-dimensional space, has significantly improved the training efficiency of Large Language Models (LLMs) by updating neural network layers using low-rank matrices. Since the generation of adversarial examples is an optimization process analogous to model training, this naturally raises the question: Do adversarial perturbations exhibit a similar low-rank structure? In this paper, we provide both theoretical analysis and extensive empirical investigation across various attack methods, model architectures, and datasets to show that adversarial perturbations indeed possess an inherently low-rank structure. This insight opens up new opportunities for improving both adversarial attacks and defenses. We mainly focus on leveraging this low-rank property to improve the efficiency and effectiveness of black-box adversarial attacks, which often suffer from excessive query requirements. Our method follows a two-step approach. First, we use a reference model and auxiliary data to guide the projection of gradients into a low-dimensional subspace. Next, we confine the perturbation search in black-box attacks to this low-rank subspace, significantly improving the efficiency and effectiveness of the adversarial attacks. We evaluated our approach across a range of attack methods, benchmark models, datasets, and threat models. The results demonstrate substantial and consistent improvements in the performance of our low-rank adversarial attacks compared to conventional methods.

preprint2023arXiv

Beyond PID Controllers: PPO with Neuralized PID Policy for Proton Beam Intensity Control in Mu2e

We introduce a novel Proximal Policy Optimization (PPO) algorithm aimed at addressing the challenge of maintaining a uniform proton beam intensity delivery in the Muon to Electron Conversion Experiment (Mu2e) at Fermi National Accelerator Laboratory (Fermilab). Our primary objective is to regulate the spill process to ensure a consistent intensity profile, with the ultimate goal of creating an automated controller capable of providing real-time feedback and calibration of the Spill Regulation System (SRS) parameters on a millisecond timescale. We treat the Mu2e accelerator system as a Markov Decision Process suitable for Reinforcement Learning (RL), utilizing PPO to reduce bias and enhance training stability. A key innovation in our approach is the integration of a neuralized Proportional-Integral-Derivative (PID) controller into the policy function, resulting in a significant improvement in the Spill Duty Factor (SDF) by 13.6%, surpassing the performance of the current PID controller baseline by an additional 1.6%. This paper presents the preliminary offline results based on a differentiable simulator of the Mu2e accelerator. It paves the groundwork for real-time implementations and applications, representing a crucial step towards automated proton beam intensity control for the Mu2e experiment.

preprint2023arXiv

HS-GCN: Hamming Spatial Graph Convolutional Networks for Recommendation

An efficient solution to the large-scale recommender system is to represent users and items as binary hash codes in the Hamming space. Towards this end, existing methods tend to code users by modeling their Hamming similarities with the items they historically interact with, which are termed as the first-order similarities in this work. Despite their efficiency, these methods suffer from the suboptimal representative capacity, since they forgo the correlation established by connecting multiple first-order similarities, i.e., the relation among the indirect instances, which could be defined as the high-order similarity. To tackle this drawback, we propose to model both the first- and the high-order similarities in the Hamming space through the user-item bipartite graph. Therefore, we develop a novel learning to hash framework, namely Hamming Spatial Graph Convolutional Networks (HS-GCN), which explicitly models the Hamming similarity and embeds it into the codes of users and items. Extensive experiments on three public benchmark datasets demonstrate that our proposed model significantly outperforms several state-of-the-art hashing models, and obtains performance comparable with the real-valued recommendation models.

preprint2023arXiv

STanHop: Sparse Tandem Hopfield Model for Memory-Enhanced Time Series Prediction

We present STanHop-Net (Sparse Tandem Hopfield Network) for multivariate time series prediction with memory-enhanced capabilities. At the heart of our approach is STanHop, a novel Hopfield-based neural network block, which sparsely learns and stores both temporal and cross-series representations in a data-dependent fashion. In essence, STanHop sequentially learn temporal representation and cross-series representation using two tandem sparse Hopfield layers. In addition, StanHop incorporates two additional external memory modules: a Plug-and-Play module and a Tune-and-Play module for train-less and task-aware memory-enhancements, respectively. They allow StanHop-Net to swiftly respond to certain sudden events. Methodologically, we construct the StanHop-Net by stacking STanHop blocks in a hierarchical fashion, enabling multi-resolution feature extraction with resolution-specific sparsity. Theoretically, we introduce a sparse extension of the modern Hopfield model (Generalized Sparse Modern Hopfield Model) and show that it endows a tighter memory retrieval error compared to the dense counterpart without sacrificing memory capacity. Empirically, we validate the efficacy of our framework on both synthetic and real-world settings.

preprint2022arXiv

A Multi-rater Comparative Study of Automatic Target Localization Methods for Epilepsy Deep Brain Stimulation Procedures

Epilepsy is the fourth most common neurological disorder and affects people of all ages worldwide. Deep Brain Stimulation (DBS) has emerged as an alternative treatment option when anti-epileptic drugs or resective surgery cannot lead to satisfactory outcomes. To facilitate the planning of the procedure and for its standardization, it is desirable to develop an algorithm to automatically localize the DBS stimulation target, i.e., Anterior Nucleus of Thalamus (ANT), which is a challenging target to plan. In this work, we perform an extensive comparative study by benchmarking various localization methods for ANT-DBS. Specifically, the methods involved in this study include traditional registration method and deep-learning-based methods including heatmap matching and differentiable spatial to numerical transform (DSNT). Our experimental results show that the deep-learning (DL)-based localization methods that are trained with pseudo labels can achieve a performance that is comparable to the inter-rater and intra-rater variability and that they are orders of magnitude faster than traditional methods.

preprint2022arXiv

A Simple Meta-learning Paradigm for Zero-shot Intent Classification with Mixture Attention Mechanism

Zero-shot intent classification is a vital and challenging task in dialogue systems, which aims to deal with numerous fast-emerging unacquainted intents without annotated training data. To obtain more satisfactory performance, the crucial points lie in two aspects: extracting better utterance features and strengthening the model generalization ability. In this paper, we propose a simple yet effective meta-learning paradigm for zero-shot intent classification. To learn better semantic representations for utterances, we introduce a new mixture attention mechanism, which encodes the pertinent word occurrence patterns by leveraging the distributional signature attention and multi-layer perceptron attention simultaneously. To strengthen the transfer ability of the model from seen classes to unseen classes, we reformulate zero-shot intent classification with a meta-learning strategy, which trains the model by simulating multiple zero-shot classification tasks on seen categories, and promotes the model generalization ability with a meta-adapting procedure on mimic unseen categories. Extensive experiments on two real-world dialogue datasets in different languages show that our model outperforms other strong baselines on both standard and generalized zero-shot intent classification tasks.

preprint2022arXiv

An Optical Parametric Amplifier via $ χ^{(2)} $ in AlGaAs Waveguides

We report parametric gain by utilizing $ χ^{(2)} $ non-linearities in a semiconductor Bragg Reflection Waveguide (BRW) waveguide chip. Under the two-mode degenerate type II phase matching, it can be shown that more than 18 dBs of parametric gain for both TE and TM modes is tenable in 100s of micrometers of device length. Polarization insensitive parametric gain can be attained within the 1550 nm region of the spectrum. These AlGaAs BRW waveguides exhibit sub-photon per pulse sensitivity. This is in sharp contrast to other types of parametric gain devices which utilize $ χ^{(3)} $, where the pump wavelength is in the vicinity of the signal wavelength. This sensitivity, which reached 0.1~photon/pulse, can usher a new era for on-chip quantum information processing using compact, micrometer-scale devices.

preprint2022arXiv

Bregman Proximal Langevin Monte Carlo via Bregman--Moreau Envelopes

We propose efficient Langevin Monte Carlo algorithms for sampling distributions with nonsmooth convex composite potentials, which is the sum of a continuously differentiable function and a possibly nonsmooth function. We devise such algorithms leveraging recent advances in convex analysis and optimization methods involving Bregman divergences, namely the Bregman--Moreau envelopes and the Bregman proximity operators, and in the Langevin Monte Carlo algorithms reminiscent of mirror descent. The proposed algorithms extend existing Langevin Monte Carlo algorithms in two aspects -- the ability to sample nonsmooth distributions with mirror descent-like algorithms, and the use of the more general Bregman--Moreau envelope in place of the Moreau envelope as a smooth approximation of the nonsmooth part of the potential. A particular case of the proposed scheme is reminiscent of the Bregman proximal gradient algorithm. The efficiency of the proposed methodology is illustrated with various sampling tasks at which existing Langevin Monte Carlo methods are known to perform poorly.

preprint2022arXiv

Cats: Complementary CNN and Transformer Encoders for Segmentation

Recently, deep learning methods have achieved state-of-the-art performance in many medical image segmentation tasks. Many of these are based on convolutional neural networks (CNNs). For such methods, the encoder is the key part for global and local information extraction from input images; the extracted features are then passed to the decoder for predicting the segmentations. In contrast, several recent works show a superior performance with the use of transformers, which can better model long-range spatial dependencies and capture low-level details. However, transformer as sole encoder underperforms for some tasks where it cannot efficiently replace the convolution based encoder. In this paper, we propose a model with double encoders for 3D biomedical image segmentation. Our model is a U-shaped CNN augmented with an independent transformer encoder. We fuse the information from the convolutional encoder and the transformer, and pass it to the decoder to obtain the results. We evaluate our methods on three public datasets from three different challenges: BTCV, MoDA and Decathlon. Compared to the state-of-the-art models with and without transformers on each task, our proposed method obtains higher Dice scores across the board.

preprint2022arXiv

Label-enhanced Prototypical Network with Contrastive Learning for Multi-label Few-shot Aspect Category Detection

Multi-label aspect category detection allows a given review sentence to contain multiple aspect categories, which is shown to be more practical in sentiment analysis and attracting increasing attention. As annotating large amounts of data is time-consuming and labor-intensive, data scarcity occurs frequently in real-world scenarios, which motivates multi-label few-shot aspect category detection. However, research on this problem is still in infancy and few methods are available. In this paper, we propose a novel label-enhanced prototypical network (LPN) for multi-label few-shot aspect category detection. The highlights of LPN can be summarized as follows. First, it leverages label description as auxiliary knowledge to learn more discriminative prototypes, which can retain aspect-relevant information while eliminating the harmful effect caused by irrelevant aspects. Second, it integrates with contrastive learning, which encourages that the sentences with the same aspect label are pulled together in embedding space while simultaneously pushing apart the sentences with different aspect labels. In addition, it introduces an adaptive multi-label inference module to predict the aspect count in the sentence, which is simple yet effective. Extensive experimental results on three datasets demonstrate that our proposed model LPN can consistently achieve state-of-the-art performance.

preprint2022arXiv

Learning to Infer Belief Embedded Communication

In multi-agent collaboration problems with communication, an agent's ability to encode their intention and interpret other agents' strategies is critical for planning their future actions. This paper introduces a novel algorithm called Intention Embedded Communication (IEC) to mimic an agent's language learning ability. IEC contains a perception module for decoding other agents' intentions in response to their past actions. It also includes a language generation module for learning implicit grammar during communication with two or more agents. Such grammar, by construction, should be compact for efficient communication. Both modules undergo conjoint evolution - similar to an infant's babbling that enables it to learn a language of choice by trial and error. We utilised three multi-agent environments, namely predator/prey, traffic junction and level-based foraging and illustrate that such a co-evolution enables us to learn much quicker (50%) than state-of-the-art algorithms like MADDPG. Ablation studies further show that disabling the inferring belief module, communication module, and the hidden states reduces the model performance by 38%, 60% and 30%, respectively. Hence, we suggest that modelling other agents' behaviour accelerates another agent to learn grammar and develop a language to communicate efficiently. We evaluate our method on a set of cooperative scenarios and show its superior performance to other multi-agent baselines. We also demonstrate that it is essential for agents to reason about others' states and learn this ability by continuous communication.

preprint2022arXiv

ModDrop++: A Dynamic Filter Network with Intra-subject Co-training for Multiple Sclerosis Lesion Segmentation with Missing Modalities

Multiple Sclerosis (MS) is a chronic neuroinflammatory disease and multi-modality MRIs are routinely used to monitor MS lesions. Many automatic MS lesion segmentation models have been developed and have reached human-level performance. However, most established methods assume the MRI modalities used during training are also available during testing, which is not guaranteed in clinical practice. Previously, a training strategy termed Modality Dropout (ModDrop) has been applied to MS lesion segmentation to achieve the state-of-the-art performance with missing modality. In this paper, we present a novel method dubbed ModDrop++ to train a unified network adaptive to an arbitrary number of input MRI sequences. ModDrop++ upgrades the main idea of ModDrop in two key ways. First, we devise a plug-and-play dynamic head and adopt a filter scaling strategy to improve the expressiveness of the network. Second, we design a co-training strategy to leverage the intra-subject relation between full modality and missing modality. Specifically, the intra-subject co-training strategy aims to guide the dynamic head to generate similar feature representations between the full- and missing-modality data from the same subject. We use two public MS datasets to show the superiority of ModDrop++. Source code and trained models are available at https://github.com/han-liu/ModDropPlusPlus.

preprint2022arXiv

Review Polarity-wise Recommender

Utilizing review information to enhance recommendation, the de facto review-involved recommender systems, have received increasing interests over the past few years. Thereinto, one advanced branch is to extract salient aspects from textual reviews (i.e., the item attributes that users express) and combine them with the matrix factorization technique. However, existing approaches all ignore the fact that semantically different reviews often include opposite aspect information. In particular, positive reviews usually express aspects that users prefer, while negative ones describe aspects that users reject. As a result, it may mislead the recommender systems into making incorrect decisions pertaining to user preference modeling. Towards this end, in this paper, we propose a Review Polarity-wise Recommender model, dubbed as RPR, to discriminately treat reviews with different polarities. To be specific, in this model, positive and negative reviews are separately gathered and utilized to model the user-preferred and user-rejected aspects, respectively. Besides, in order to overcome the imbalance problem of semantically different reviews, we also develop an aspect-aware importance weighting approach to align the aspect importance for these two kinds of reviews. Extensive experiments conducted on eight benchmark datasets have demonstrated the superiority of our model as compared to a series of state-of-the-art review-involved baselines. Moreover, our method can provide certain explanations to the real-world rating prediction scenarios.

preprint2022arXiv

Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data

Integrating cross-department multi-modal data (e.g., radiological, pathological, genomic, and clinical data) is ubiquitous in brain cancer diagnosis and survival prediction. To date, such an integration is typically conducted by human physicians (and panels of experts), which can be subjective and semi-quantitative. Recent advances in multi-modal deep learning, however, have opened a door to leverage such a process to a more objective and quantitative manner. Unfortunately, the prior arts of using four modalities on brain cancer survival prediction are limited by a "complete modalities" setting (i.e., with all modalities available). Thus, there are still open questions on how to effectively predict brain cancer survival from the incomplete radiological, pathological, genomic, and demographic data (e.g., one or more modalities might not be collected for a patient). For instance, should we use both complete and incomplete data, and more importantly, how to use those data? To answer the preceding questions, we generalize the multi-modal learning on cross-department multi-modal data to a missing data setting. Our contribution is three-fold: 1) We introduce optimal multi-modal learning with missing data (MMD) pipeline with optimized hardware consumption and computational efficiency; 2) We extend multi-modal learning on radiological, pathological, genomic, and demographic data into missing data scenarios; 3) a large-scale public dataset (with 962 patients) is collected to systematically evaluate glioma tumor survival prediction using four modalities. The proposed method improved the C-index of survival prediction from 0.7624 to 0.8053.

preprint2022arXiv

Switch Trajectory Transformer with Distributional Value Approximation for Multi-Task Reinforcement Learning

We propose SwitchTT, a multi-task extension to Trajectory Transformer but enhanced with two striking features: (i) exploiting a sparsely activated model to reduce computation cost in multi-task offline model learning and (ii) adopting a distributional trajectory value estimator that improves policy performance, especially in sparse reward settings. These two enhancements make SwitchTT suitable for solving multi-task offline reinforcement learning problems, where model capacity is critical for absorbing the vast quantities of knowledge available in the multi-task dataset. More specifically, SwitchTT exploits switch transformer model architecture for multi-task policy learning, allowing us to improve model capacity without proportional computation cost. Also, SwitchTT approximates the distribution rather than the expectation of trajectory value, mitigating the effects of the Monte-Carlo Value estimator suffering from poor sample complexity, especially in the sparse-reward setting. We evaluate our method using the suite of ten sparse-reward tasks from the gym-mini-grid environment.We show an improvement of 10% over Trajectory Transformer across 10-task learning and obtain up to 90% increase in offline model training speed. Our results also demonstrate the advantage of the switch transformer model for absorbing expert knowledge and the importance of value distribution in evaluating the trajectory.

preprint2022arXiv

Synthetic CT Skull Generation for Transcranial MR Imaging-Guided Focused Ultrasound Interventions with Conditional Adversarial Networks

Transcranial MRI-guided focused ultrasound (TcMRgFUS) is a therapeutic ultrasound method that focuses sound through the skull to a small region noninvasively under MRI guidance. It is clinically approved to thermally ablate regions of the thalamus and is being explored for other therapies, such as blood brain barrier opening and neuromodulation. To accurately target ultrasound through the skull, the transmitted waves must constructively interfere at the target region. However, heterogeneity of the sound speed, density, and ultrasound attenuation in different individuals' skulls requires patient-specific estimates of these parameters for optimal treatment planning. CT imaging is currently the gold standard for estimating acoustic properties of an individual skull during clinical procedures, but CT imaging exposes patients to radiation and increases the overall number of imaging procedures required for therapy. A method to estimate acoustic parameters in the skull without the need for CT would be desirable. Here, we synthesized CT images from routinely acquired T1-weighted MRI by using a 3D patch-based conditional generative adversarial network and evaluated the performance of synthesized CT images for treatment planning with transcranial focused ultrasound. We compared the performance of synthetic CT to real CT images using Kranion and k-Wave acoustic simulation. Our work demonstrates the feasibility of replacing real CT with the MR-synthesized CT for TcMRgFUS planning.

preprint2022arXiv

Wasserstein Distributionally Robust Optimization with Wasserstein Barycenters

In many applications in statistics and machine learning, the availability of data samples from multiple possibly heterogeneous sources has become increasingly prevalent. On the other hand, in distributionally robust optimization, we seek data-driven decisions which perform well under the most adverse distribution from a nominal distribution constructed from data samples within a certain discrepancy of probability distributions. However, it remains unclear how to achieve such distributional robustness in model learning and estimation when data samples from multiple sources are available. In this work, we propose constructing the nominal distribution in optimal transport-based distributionally robust optimization problems through the notion of Wasserstein barycenter as an aggregation of data samples from multiple sources. Under specific choices of the loss function, the proposed formulation admits a tractable reformulation as a finite convex program, with powerful finite-sample and asymptotic guarantees. As an illustrative example, we demonstrate with the problem of distributionally robust sparse inverse covariance matrix estimation for zero-mean Gaussian random vectors that our proposed scheme outperforms other widely used estimators in both the low- and high-dimensional regimes.

preprint2021arXiv

A Survey on Epistemic (Model) Uncertainty in Supervised Learning: Recent Advances and Applications

Quantifying the uncertainty of supervised learning models plays an important role in making more reliable predictions. Epistemic uncertainty, which usually is due to insufficient knowledge about the model, can be reduced by collecting more data or refining the learning models. Over the last few years, scholars have proposed many epistemic uncertainty handling techniques which can be roughly grouped into two categories, i.e., Bayesian and ensemble. This paper provides a comprehensive review of epistemic uncertainty learning techniques in supervised learning over the last five years. As such, we, first, decompose the epistemic uncertainty into bias and variance terms. Then, a hierarchical categorization of epistemic uncertainty learning techniques along with their representative models is introduced. In addition, several applications such as computer vision (CV) and natural language processing (NLP) are presented, followed by a discussion on research gaps and possible future research directions.

preprint2021arXiv

BLOCKEYE: Hunting For DeFi Attacks on Blockchain

Decentralized finance, i.e., DeFi, has become the most popular type of application on many public blockchains (e.g., Ethereum) in recent years. Compared to the traditional finance, DeFi allows customers to flexibly participate in diverse blockchain financial services (e.g., lending, borrowing, collateralizing, exchanging etc.) via smart contracts at a relatively low cost of trust. However, the open nature of DeFi inevitably introduces a large attack surface, which is a severe threat to the security of participants funds. In this paper, we proposed BLOCKEYE, a real-time attack detection system for DeFi projects on the Ethereum blockchain. Key capabilities provided by BLOCKEYE are twofold: (1) Potentially vulnerable DeFi projects are identified based on an automatic security analysis process, which performs symbolic reasoning on the data flow of important service states, e.g., asset price, and checks whether they can be externally manipulated. (2) Then, a transaction monitor is installed offchain for a vulnerable DeFi project. Transactions sent not only to that project but other associated projects as well are collected for further security analysis. A potential attack is flagged if a violation is detected on a critical invariant configured in BLOCKEYE, e.g., Benefit is achieved within a very short time and way much bigger than the cost. We applied BLOCKEYE in several popular DeFi projects and managed to discover potential security attacks that are unreported before. A video of BLOCKEYE is available at https://youtu.be/7DjsWBLdlQU.

preprint2021arXiv

Converse, Focus and Guess -- Towards Multi-Document Driven Dialogue

We propose a novel task, Multi-Document Driven Dialogue (MD3), in which an agent can guess the target document that the user is interested in by leading a dialogue. To benchmark progress, we introduce a new dataset of GuessMovie, which contains 16,881 documents, each describing a movie, and associated 13,434 dialogues. Further, we propose the MD3 model. Keeping guessing the target document in mind, it converses with the user conditioned on both document engagement and user feedback. In order to incorporate large-scale external documents into the dialogue, it pretrains a document representation which is sensitive to attributes it talks about an object. Then it tracks dialogue state by detecting evolvement of document belief and attribute belief, and finally optimizes dialogue policy in principle of entropy decreasing and reward increasing, which is expected to successfully guess the user's target in a minimum number of turns. Experiments show that our method significantly outperforms several strong baseline methods and is very close to human's performance.

preprint2021arXiv

High-Temperature Structure Detection in Ferromagnets

This paper studies structure detection problems in high temperature ferromagnetic (positive interaction only) Ising models. The goal is to distinguish whether the underlying graph is empty, i.e., the model consists of independent Rademacher variables, versus the alternative that the underlying graph contains a subgraph of a certain structure. We give matching upper and lower minimax bounds under which testing this problem is possible/impossible respectively. Our results reveal that a key quantity called graph arboricity drives the testability of the problem. On the computational front, under a conjecture of the computational hardness of sparse principal component analysis, we prove that, unless the signal is strong enough, there are no polynomial time tests which are capable of testing this problem. In order to prove this result we exhibit a way to give sharp inequalities for the even moments of sums of i.i.d. Rademacher random variables which may be of independent interest.

preprint2020arXiv

"Why is 'Chicago' deceptive?" Towards Building Model-Driven Tutorials for Humans

To support human decision making with machine learning models, we often need to elucidate patterns embedded in the models that are unsalient, unknown, or counterintuitive to humans. While existing approaches focus on explaining machine predictions with real-time assistance, we explore model-driven tutorials to help humans understand these patterns in a training phase. We consider both tutorials with guidelines from scientific papers, analogous to current practices of science communication, and automatically selected examples from training data with explanations. We use deceptive review detection as a testbed and conduct large-scale, randomized human-subject experiments to examine the effectiveness of such tutorials. We find that tutorials indeed improve human performance, with and without real-time assistance. In particular, although deep learning provides superior predictive performance than simple models, tutorials and explanations from simple models are more useful to humans. Our work suggests future directions for human-centered tutorials and explanations towards a synergy between humans and AI.

preprint2020arXiv

A Deep Learning based Wearable Healthcare IoT Device for AI-enabled Hearing Assistance Automation

With the recent booming of artificial intelligence (AI), particularly deep learning techniques, digital healthcare is one of the prevalent areas that could gain benefits from AI-enabled functionality. This research presents a novel AI-enabled Internet of Things (IoT) device operating from the ESP-8266 platform capable of assisting those who suffer from impairment of hearing or deafness to communicate with others in conversations. In the proposed solution, a server application is created that leverages Google's online speech recognition service to convert the received conversations into texts, then deployed to a micro-display attached to the glasses to display the conversation contents to deaf people, to enable and assist conversation as normal with the general population. Furthermore, in order to raise alert of traffic or dangerous scenarios, an 'urban-emergency' classifier is developed using a deep learning model, Inception-v4, with transfer learning to detect/recognize alerting/alarming sounds, such as a horn sound or a fire alarm, with texts generated to alert the prospective user. The training of Inception-v4 was carried out on a consumer desktop PC and then implemented into the AI based IoT application. The empirical results indicate that the developed prototype system achieves an accuracy rate of 92% for sound recognition and classification with real-time performance.

preprint2020arXiv

Covariance-based sample selection for heterogeneous data: Applications to gene expression and autism risk gene detection

Risk for autism can be influenced by genetic mutations in hundreds of genes. Based on findings showing that genes with highly correlated gene expressions are functionally interrelated, "guilt by association" methods such as DAWN have been developed to identify these autism risk genes. Previous research analyzes the BrainSpan dataset, which contains gene expression of brain tissues from varying regions and developmental periods. Since the spatiotemporal properties of brain tissue is known to affect the gene expression's covariance, previous research have focused only on a specific subset of samples to avoid the issue of heterogeneity. This leads to a potential loss of power when detecting risk genes. In this article, we develop a new method called COBS (COvariance-Based sample Selection) to find a larger and more homogeneous subset of samples that share the same population covariance matrix for the downstream DAWN analysis. To demonstrate COBS's effectiveness, we utilize genetic risk scores from two sequential data freezes obtained in 2014 and 2019. We show COBS improves DAWN's ability to predict risk genes detected in the newer data freeze when utilizing the risk scores of the older data freeze as input.

preprint2020arXiv

Enhancing classical target detection performance using nonclassical Light

In this article, we demonstrate theoretically and experimentally how one can exploit correlations generated in monolithic semiconductor quantum light sources to enhance the performance of optical target detection. A prototype target detection protocol, the quantum time-correlation (QTC) detection protocol, with spontaneous parametric down-converted photon-pair sources, is discussed. The QTC protocol only requires time-resolved photon-counting detection, which is phase-insensitive and therefore suitable for optical target detection. As a comparison to the QTC detection protocol, we also consider a classical phase-insensitive target detection protocol based on intensity detection. We formulated the target detection problem as a probe light transmission estimation problem, and we quantify the target detection performance with the Fisher information criterion and the receiver operation characteristic analysis. Unlike classical target detection and ranging protocols, the probe photons in our QTC detection protocol are completely indistinguishable from the background noise and therefore useful for covert ranging applications. Finally, our technological platform is highly scalable and tunable and thus amenable to large scale integration necessary for practical applications.

preprint2020arXiv

Enhancing LIDAR performance metrics using continuous-wave photon-pair sources

In order to enhance LIDAR performance metrics such as target detection sensitivity, noise resilience and ranging accuracy, we exploit the strong temporal correlation within the photon pairs generated in continuous-wave pumped semiconductor waveguides. The enhancement attained through the use of such non-classical sources is measured and compared to a corresponding target detection scheme based on simple photon-counting detection. The performances of both schemes are quantified by the estimation uncertainty and Fisher information of the probe photon transmission, which is a widely adopted sensing figure of merit. The target detection experiments are conducted with high probe channel loss (\(\simeq 1-5\times10^{-5}\)) and formidable environment noise up to 36 dB stronger than the detected probe power of \(1.64\times 10^{-5}\) pW. The experimental result shows significant advantages offered by the enhanced scheme with up to 26.3 dB higher performance in terms of estimation uncertainty, which is equivalent to a reduction of target detection time by a factor of 430 or 146 (21.6 dB) times more resilience to noise. We also experimentally demonstrated ranging with these non-classical photon pairs generated with continuous-wave pump in the presence of strong noise and loss, achieving \(\approx\)5 cm distance resolution that is limited by the temporal resolution of the detectors.

preprint2020arXiv

EQL -- an extremely easy to learn knowledge graph query language, achieving highspeed and precise search

EQL, also named as Extremely Simple Query Language, can be widely used in the field of knowledge graph, precise search, strong artificial intelligence, database, smart speaker ,patent search and other fields. EQL adopt the principle of minimalism in design and pursues simplicity and easy to learn so that everyone can master it quickly. EQL language and lambda calculus are interconvertible, that reveals the mathematical nature of EQL language, and lays a solid foundation for rigor and logical integrity of EQL language. The EQL language and a comprehensive knowledge graph system with the world's commonsense can together form the foundation of strong AI in the future, and make up for the current lack of understanding of world's commonsense by current AI system. EQL language can be used not only by humans, but also as a basic language for data query and data exchange between robots.

preprint2020arXiv

Few-shot Slot Tagging with Collapsed Dependency Transfer and Label-enhanced Task-adaptive Projection Network

In this paper, we explore the slot tagging with only a few labeled support sentences (a.k.a. few-shot). Few-shot slot tagging faces a unique challenge compared to the other few-shot classification problems as it calls for modeling the dependencies between labels. But it is hard to apply previously learned label dependencies to an unseen domain, due to the discrepancy of label sets. To tackle this, we introduce a collapsed dependency transfer mechanism into the conditional random field (CRF) to transfer abstract label dependency patterns as transition scores. In the few-shot setting, the emission score of CRF can be calculated as a word's similarity to the representation of each label. To calculate such similarity, we propose a Label-enhanced Task-Adaptive Projection Network (L-TapNet) based on the state-of-the-art few-shot classification model -- TapNet, by leveraging label name semantics in representing labels. Experimental results show that our model significantly outperforms the strongest few-shot learning baseline by 14.64 F1 scores in the one-shot setting.

preprint2020arXiv

Joint measurement of time-frequency entanglement via sum frequency generation

We propose, analyze, and evaluate a technique for the joint measurement of time-frequency entanglement between two photons. In particular, we show that the frequency sum and time difference of two photons could be simultaneously measured through the sum-frequency generation process, without measuring the time or frequency of each individual photon. We demonstrate the usefulness of this technique by using it to design a time-frequency entanglement based continuous variable superdense coding and a quantum illumination protocol. Performance analysis of these two protocols suggests that the joint measurement of strong time-frequency entanglement of non-classical photon pairs can significantly enhance the performance of joint-measurement based quantum communication and metrology protocols.

preprint2020arXiv

Label-Wise Document Pre-Training for Multi-Label Text Classification

A major challenge of multi-label text classification (MLTC) is to stimulatingly exploit possible label differences and label correlations. In this paper, we tackle this challenge by developing Label-Wise Pre-Training (LW-PT) method to get a document representation with label-aware information. The basic idea is that, a multi-label document can be represented as a combination of multiple label-wise representations, and that, correlated labels always cooccur in the same or similar documents. LW-PT implements this idea by constructing label-wise document classification tasks and trains label-wise document encoders. Finally, the pre-trained label-wise encoder is fine-tuned with the downstream MLTC task. Extensive experimental results validate that the proposed method has significant advantages over the previous state-of-the-art models and is able to discover reasonable label relationship. The code is released to facilitate other researchers.

preprint2020arXiv

Learning to Plan in High Dimensions via Neural Exploration-Exploitation Trees

We propose a meta path planning algorithm named \emph{Neural Exploration-Exploitation Trees~(NEXT)} for learning from prior experience for solving new path planning problems in high dimensional continuous state and action spaces. Compared to more classical sampling-based methods like RRT, our approach achieves much better sample efficiency in high-dimensions and can benefit from prior experience of planning in similar environments. More specifically, NEXT exploits a novel neural architecture which can learn promising search directions from problem structures. The learned prior is then integrated into a UCB-type algorithm to achieve an online balance between \emph{exploration} and \emph{exploitation} when solving a new problem. We conduct thorough experiments to show that NEXT accomplishes new planning problems with more compact search trees and significantly outperforms state-of-the-art methods on several benchmarks.

preprint2020arXiv

Neural Polysynthetic Language Modelling

Research in natural language processing commonly assumes that approaches that work well for English and and other widely-used languages are "language agnostic". In high-resource languages, especially those that are analytic, a common approach is to treat morphologically-distinct variants of a common root as completely independent word types. This assumes, that there are limited morphological inflections per root, and that the majority will appear in a large enough corpus, so that the model can adequately learn statistics about each form. Approaches like stemming, lemmatization, or subword segmentation are often used when either of those assumptions do not hold, particularly in the case of synthetic languages like Spanish or Russian that have more inflection than English. In the literature, languages like Finnish or Turkish are held up as extreme examples of complexity that challenge common modelling assumptions. Yet, when considering all of the world's languages, Finnish and Turkish are closer to the average case. When we consider polysynthetic languages (those at the extreme of morphological complexity), approaches like stemming, lemmatization, or subword modelling may not suffice. These languages have very high numbers of hapax legomena, showing the need for appropriate morphological handling of words, without which it is not possible for a model to capture enough word statistics. We examine the current state-of-the-art in language modelling, machine translation, and text prediction for four polysynthetic languages: Guaraní, St. Lawrence Island Yupik, Central Alaskan Yupik, and Inuktitut. We then propose a novel framework for language modelling that combines knowledge representations from finite-state morphological analyzers with Tensor Product Representations in order to enable neural language models capable of handling the full range of typologically variant languages.

preprint2020arXiv

Non-classical Semiconductor Photon Sources Enhancing the Performance of Classical Target Detection Systems

We demonstrate and analyze how deploying non-classical intensity correlations obtained from a monolithic semiconductor quantum photon source can enhance classical target detection systems. This is demonstrated by examining the advantages offered by the utilization of the non-classical correlations in a correlation based target detection protocol. We experimentally demonstrate that under the same condition, the target contrast obtained from the protocol when non-classical correlations are utilized exhibits an improvement of up to 17.79dB over the best classical intensity correlation-based target detection protocol, under 29.69dB channel loss and excess noise 13.40dB stronger than the probe signal. We also assessed how the strong frequency correlations within the non-classical photon pairs can be used to further enhance this protocol.

preprint2020arXiv

Picasso: A Sparse Learning Library for High Dimensional Data Analysis in R and Python

We describe a new library named picasso, which implements a unified framework of pathwise coordinate optimization for a variety of sparse learning problems (e.g., sparse linear regression, sparse logistic regression, sparse Poisson regression and scaled sparse linear regression) combined with efficient active set selection strategies. Besides, the library allows users to choose different sparsity-inducing regularizers, including the convex $\ell_1$, nonconvex MCP and SCAD regularizers. The library is coded in C++ and has user-friendly R and Python wrappers. Numerical experiments demonstrate that picasso can scale up to large problems efficiently.

preprint2020arXiv

SDFN: Segmentation-based Deep Fusion Network for Thoracic Disease Classification in Chest X-ray Images

This study aims to automatically diagnose thoracic diseases depicted on the chest x-ray (CXR) images using deep convolutional neural networks. The existing methods generally used the entire CXR images for training purposes, but this strategy may suffer from two drawbacks. First, potential misalignment or the existence of irrelevant objects in the entire CXR images may cause unnecessary noise and thus limit the network performance. Second, the relatively low image resolution caused by the resizing operation, which is a common preprocessing procedure for training neural networks, may lead to the loss of image details, making it difficult to detect pathologies with small lesion regions. To address these issues, we present a novel method termed as segmentation-based deep fusion network (SDFN), which leverages the domain knowledge and the higherresolution information of local lung regions. Specifically, the local lung regions were identified and cropped by the Lung Region Generator (LRG). Two CNN-based classification models were then used as feature extractors to obtain the discriminative features of the entire CXR images and the cropped lung region images. Lastly, the obtained features were fused by the feature fusion module for disease classification. Evaluated by the NIH benchmark split on the Chest X-ray 14 Dataset, our experimental result demonstrated that the developed method achieved more accurate disease classification compared with the available approaches via the receiver operating characteristic (ROC) analyses. It was also found that the SDFN could localize the lesion regions more precisely as compared to the traditional method.

preprint2020arXiv

Target Detection aided by Quantum Temporal Correlations: Theoretical Analysis and Experimental Validation

The detection of objects in the presence of significant background noise is a problem of fundamental interest in sensing. In this work, we theoretically analyze a prototype target detection protocol, the quantum temporal correlation (QTC) detection protocol, which is implemented in this work utilizing spontaneous parametric down-converted photon-pair sources. The QTC detection protocol only requires time-resolved photon-counting detection, which is phase-insensitive and therefore suitable for optical target detection. As a comparison to the QTC detection protocol, we also consider a classical phase-insensitive target detection protocol based on intensity detection that is practical in the optical regime. We formulated the target detection problem as a total probe photon transmission estimation problem and obtain an analytical expression of the receiver operating characteristic (ROC) curves. We carry out experiments using a semiconductor waveguide source, which we developed and previously reported. The experimental results agree very well with the theoretical prediction. In particular, we find that in a high-level environment noise and loss, the QTC detection protocol can achieve performance comparable to that of the classical protocol (that is practical in the optical regime) but with \(\simeq 57\) times lower detection time in terms of ROC curve metric. The performance of the QTC detection protocol experiment setup could be further improved with a higher transmission of the reference photon and better detector time uncertainty. Furthermore, the probe photons in the QTC detection protocol are completely indistinguishable from the background noise and therefore useful for covert ranging applications. Finally, our technological platform is highly scalable as well as tunable and thus amenable to large scale integration, which is necessary for practical applications.

preprint2020arXiv

The flare Package for High Dimensional Linear Regression and Precision Matrix Estimation in R

This paper describes an R package named flare, which implements a family of new high dimensional regression methods (LAD Lasso, SQRT Lasso, $\ell_q$ Lasso, and Dantzig selector) and their extensions to sparse precision matrix estimation (TIGER and CLIME). These methods exploit different nonsmooth loss functions to gain modeling flexibility, estimation robustness, and tuning insensitiveness. The developed solver is based on the alternating direction method of multipliers (ADMM). The package flare is coded in double precision C, and called from R by a user-friendly interface. The memory usage is optimized by using the sparse matrix output. The experiments show that flare is efficient and can scale up to large problems.

preprint2020arXiv

The huge Package for High-dimensional Undirected Graph Estimation in R

We describe an R package named huge which provides easy-to-use functions for estimating high dimensional undirected graphs from data. This package implements recent results in the literature, including Friedman et al. (2007), Liu et al. (2009, 2012) and Liu et al. (2010). Compared with the existing graph estimation package glasso, the huge package provides extra features: (1) instead of using Fortan, it is written in C, which makes the code more portable and easier to modify; (2) besides fitting Gaussian graphical models, it also provides functions for fitting high dimensional semiparametric Gaussian copula models; (3) more functions like data-dependent model selection, data generation and graph visualization; (4) a minor convergence problem of the graphical lasso algorithm is corrected; (5) the package allows the user to apply both lossless and lossy screening rules to scale up large-scale problems, making a tradeoff between computational and statistical efficiency.