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preprint2020arXiv

A Machine Learning-enhanced Robust P-Phase Picker for Real-time Seismic Monitoring

Identifying the arrival times of seismic P-phases plays a significant role in real-time seismic monitoring, which provides critical guidance for emergency response activities. While considerable research has been conducted on this topic, efficiently capturing the arrival times of seismic P-phases hidden within intensively distributed and noisy seismic waves, such as those generated by the aftershocks of destructive earthquakes, remains a real challenge since most common existing methods in seismology rely on laborious expert supervision. To this end, in this paper, we present a machine learning-enhanced framework based on ensemble learning strategy, EL-Picker, for the automatic identification of seismic P-phase arrivals on continuous and massive waveforms. More specifically, EL-Picker consists of three modules, namely, Trigger, Classifier, and Refiner, and an ensemble learning strategy is exploited to integrate several machine learning classifiers. An evaluation of the aftershocks following the MS 8.0 Wenchuan earthquake demonstrates that EL-Picker can not only achieve the best identification performance but also identify 120% more seismic P-phase arrivals as complementary data. Me

preprint2020arXiv

Privacy Preserving Recalibration under Domain Shift

Classifiers deployed in high-stakes real-world applications must output calibrated confidence scores, i.e. their predicted probabilities should reflect empirical frequencies. Recalibration algorithms can greatly improve a model's probability estimates; however, existing algorithms are not applicable in real-world situations where the test data follows a different distribution from the training data, and privacy preservation is paramount (e.g. protecting patient records). We introduce a framework that abstracts out the properties of recalibration problems under differential privacy constraints. This framework allows us to adapt existing recalibration algorithms to satisfy differential privacy while remaining effective for domain-shift situations. Guided by our framework, we also design a novel recalibration algorithm, accuracy temperature scaling, that outperforms prior work on private datasets. In an extensive empirical study, we find that our algorithm improves calibration on domain-shift benchmarks under the constraints of differential privacy. On the 15 highest severity perturbations of the ImageNet-C dataset, our method achieves a median ECE of 0.029, over 2x better than th

preprint2020arXiv

A summary of the prevalence of Genetic Algorithms in Bioinformatics from 2015 onwards

In recent years, machine learning has seen an increasing presencein a large variety of fields, especially in health care and bioinformatics.More specifically, the field where machine learning algorithms have found most applications is Genetic Algorithms.The objective of this paper is to conduct a survey of articles published from 2015 onwards that deal with Genetic Algorithms(GA) and how they are used in bioinformatics.To achieve the objective, a scoping review was conducted that utilized Google Scholar alongside Publish or Perish and the Scimago Journal & CountryRank to search for respectable sources. Upon analyzing 31 articles from the field of bioinformatics, it became apparent that genetic algorithms rarely form a full application, instead they rely on other vital algorithms such as support vector machines.Indeed, support vector machines were the most prevalent algorithms used alongside genetic algorithms; however, while the usage of such algorithms contributes to the heavy focus on accuracy by GA programs, it often sidelines computation times in the process. In fact, most applications employing GAs for classification and feature selectionare nearing or at 100% success rate, an

preprint2020arXiv

asya: Mindful verbal communication using deep learning

asya is a mobile application that consists of deep learning models which analyze spectra of a human voice and do noise detection, speaker diarization, gender detection, tempo estimation, and classification of emotions using only voice. All models are language agnostic and capable of running in real-time. Our speaker diarization models have accuracy over 95% on the test data set. These models can be applied for a variety of areas like customer service improvement, sales effective conversations, psychology and couples therapy.

preprint2020arXiv

Can learning from natural image denoising be used for seismic data interpolation?

We propose a convolutional neural network (CNN) denoising based method for seismic data interpolation. It provides a simple and efficient way to break though the lack problem of geophysical training labels that are often required by deep learning methods. The new method consists of two steps: (1) Train a set of CNN denoisers from natural image clean-noisy pairs to learn denoising; (2) Integrate the trained CNN denoisers into project onto convex set (POCS) framework to perform seismic data interpolation. The method alleviates the demanding of seismic big data with similar features as applications of end-to-end deep learning on seismic data interpolation. Additionally, the proposed method is flexible for many cases of traces missing because missing cases are not involved in the training step, and thus it is of plug-and-play nature. These indicate the high generalizability of our approach and the reduction of the need of the problem-specific training. Primary results on synthetic and field data show promising interpolation performances of the presented CNN-POCS method in terms of signal-to-noise ratio, de-aliasing and weak-feature reconstruction, in comparison with traditional $f$-$x$

preprint2020arXiv

Visualizing Movement Control Optimization Landscapes

A large body of animation research focuses on optimization of movement control, either as action sequences or policy parameters. However, as closed-form expressions of the objective functions are often not available, our understanding of the optimization problems is limited. Building on recent work on analyzing neural network training, we contribute novel visualizations of high-dimensional control optimization landscapes; this yields insights into why control optimization is hard and why common practices like early termination and spline-based action parameterizations make optimization easier. For example, our experiments show how trajectory optimization can become increasingly ill-conditioned with longer trajectories, but parameterizing control as partial target states---e.g., target angles converted to torques using a PD-controller---can act as an efficient preconditioner. Both our visualizations and quantitative empirical data also indicate that neural network policy optimization scales better than trajectory optimization for long planning horizons. Our work advances the understanding of movement optimization and our visualizations should also provide value in educational use.

preprint2020arXiv

Online Learned Continual Compression with Adaptive Quantization Modules

We introduce and study the problem of Online Continual Compression, where one attempts to simultaneously learn to compress and store a representative dataset from a non i.i.d data stream, while only observing each sample once. A naive application of auto-encoders in this setting encounters a major challenge: representations derived from earlier encoder states must be usable by later decoder states. We show how to use discrete auto-encoders to effectively address this challenge and introduce Adaptive Quantization Modules (AQM) to control variation in the compression ability of the module at any given stage of learning. This enables selecting an appropriate compression for incoming samples, while taking into account overall memory constraints and current progress of the learned compression. Unlike previous methods, our approach does not require any pretraining, even on challenging datasets. We show that using AQM to replace standard episodic memory in continual learning settings leads to significant gains on continual learning benchmarks. Furthermore we demonstrate this approach with larger images, LiDAR, and reinforcement learning environments.

preprint2020arXiv

Discriminative Residual Analysis for Image Set Classification with Posture and Age Variations

Image set recognition has been widely applied in many practical problems like real-time video retrieval and image caption tasks. Due to its superior performance, it has grown into a significant topic in recent years. However, images with complicated variations, e.g., postures and human ages, are difficult to address, as these variations are continuous and gradual with respect to image appearance. Consequently, the crucial point of image set recognition is to mine the intrinsic connection or structural information from the image batches with variations. In this work, a Discriminant Residual Analysis (DRA) method is proposed to improve the classification performance by discovering discriminant features in related and unrelated groups. Specifically, DRA attempts to obtain a powerful projection which casts the residual representations into a discriminant subspace. Such a projection subspace is expected to magnify the useful information of the input space as much as possible, then the relation between the training set and the test set described by the given metric or distance will be more precise in the discriminant subspace. We also propose a nonfeasance strategy by defining another ap

preprint2020arXiv

PyTorch Metric Learning

Deep metric learning algorithms have a wide variety of applications, but implementing these algorithms can be tedious and time consuming. PyTorch Metric Learning is an open source library that aims to remove this barrier for both researchers and practitioners. The modular and flexible design allows users to easily try out different combinations of algorithms in their existing code. It also comes with complete train/test workflows, for users who want results fast. Code and documentation is available at https://www.github.com/KevinMusgrave/pytorch-metric-learning.

preprint2020arXiv

Applying Transparency in Artificial Intelligence based Personalization Systems

Artificial Intelligence based systems increasingly use personalization to provide users with relevant content, products, and solutions. Personalization is intended to support users and address their respective needs and preferences. However, users are becoming increasingly vulnerable to online manipulation due to algorithmic advancements and lack of transparency. Such manipulation decreases users' levels of trust, autonomy, and satisfaction concerning the systems with which they interact. Increasing transparency is an important goal for personalization based systems. Unfortunately, system designers lack guidance in assessing and implementing transparency in their developed systems. In this work we combine insights from technology ethics and computer science to generate a list of transparency best practices for machine generated personalization. Based on these best practices, we develop a checklist to be used by designers wishing to evaluate and increase the transparency of their algorithmic systems. Adopting a designer perspective, we apply the checklist to prominent online services and discuss its advantages and shortcomings. We encourage researchers to adopt the checklist in

preprint2020arXiv

Prevention is Better than Cure: Handling Basis Collapse and Transparency in Dense Networks

Dense nets are an integral part of any classification and regression problem. Recently, these networks have found a new application as solvers for known representations in various domains. However, one crucial issue with dense nets is it's feature interpretation and lack of reproducibility over multiple training runs. In this work, we identify a basis collapse issue as a primary cause and propose a modified loss function that circumvents this problem. We also provide a few general guidelines relating the choice of activations to loss surface roughness and appropriate scaling for designing low-weight dense nets. We demonstrate through carefully chosen numerical experiments that the basis collapse issue leads to the design of massively redundant networks. Our approach results in substantially concise nets, having $100 \times$ fewer parameters, while achieving a much lower $(10\times)$ MSE loss at scale than reported in prior works. Further, we show that the width of a dense net is acutely dependent on the feature complexity. This is in contrast to the dimension dependent width choice reported in prior theoretical works. To the best of our knowledge, this is the first time these i

preprint2020arXiv

Modelling Segmented Cardiotocography Time-Series Signals Using One-Dimensional Convolutional Neural Networks for the Early Detection of Abnormal Birth Outcomes

Gynaecologists and obstetricians visually interpret cardiotocography (CTG) traces using the International Federation of Gynaecology and Obstetrics (FIGO) guidelines to assess the wellbeing of the foetus during antenatal care. This approach has raised concerns among professionals with regards to inter- and intra-variability where clinical diagnosis only has a 30\% positive predictive value when classifying pathological outcomes. Machine learning models, trained with FIGO and other user derived features extracted from CTG traces, have been shown to increase positive predictive capacity and minimise variability. This is only possible however when class distributions are equal which is rarely the case in clinical trials where case-control observations are heavily skewed in favour of normal outcomes. Classes can be balanced using either synthetic data derived from resampled case training data or by decreasing the number of control instances. However, this either introduces bias or removes valuable information. Concerns have also been raised regarding machine learning studies and their reliance on manually handcrafted features. While this has led to some interesting results, deriving an

preprint2020arXiv

Seasonal-adjustment Based Feature Selection Method for Large-scale Search Engine Logs

Search engine logs have a great potential in tracking and predicting outbreaks of infectious disease. More precisely, one can use the search volume of some search terms to predict the infection rate of an infectious disease in nearly real-time. However, conducting accurate and stable prediction of outbreaks using search engine logs is a challenging task due to the following two-way instability characteristics of the search logs. First, the search volume of a search term may change irregularly in the short-term, for example, due to environmental factors such as the amount of media or news. Second, the search volume may also change in the long-term due to the demographic change of the search engine. That is to say, if a model is trained with such search logs with ignoring such characteristic, the resulting prediction would contain serious mispredictions when these changes occur. In this work, we proposed a novel feature selection method to overcome this instability problem. In particular, we employ a seasonal-adjustment method that decomposes each time series into three components: seasonal, trend and irregular component and build prediction models for each component individually. We

preprint2020arXiv

$β$-Variational Classifiers Under Attack

Deep Neural networks have gained lots of attention in recent years thanks to the breakthroughs obtained in the field of Computer Vision. However, despite their popularity, it has been shown that they provide limited robustness in their predictions. In particular, it is possible to synthesise small adversarial perturbations that imperceptibly modify a correctly classified input data, making the network confidently misclassify it. This has led to a plethora of different methods to try to improve robustness or detect the presence of these perturbations. In this paper, we perform an analysis of $β$-Variational Classifiers, a particular class of methods that not only solve a specific classification task, but also provide a generative component that is able to generate new samples from the input distribution. More in details, we study their robustness and detection capabilities, together with some novel insights on the generative part of the model.

preprint2020arXiv

MPCC: Matching Priors and Conditionals for Clustering

Clustering is a fundamental task in unsupervised learning that depends heavily on the data representation that is used. Deep generative models have appeared as a promising tool to learn informative low-dimensional data representations. We propose Matching Priors and Conditionals for Clustering (MPCC), a GAN-based model with an encoder to infer latent variables and cluster categories from data, and a flexible decoder to generate samples from a conditional latent space. With MPCC we demonstrate that a deep generative model can be competitive/superior against discriminative methods in clustering tasks surpassing the state of the art over a diverse set of benchmark datasets. Our experiments show that adding a learnable prior and augmenting the number of encoder updates improve the quality of the generated samples, obtaining an inception score of 9.49 $\pm$ 0.15 and improving the Fréchet inception distance over the state of the art by a 46.9% in CIFAR10.

preprint2020arXiv

Comparative performance analysis of the ResNet backbones of Mask RCNN to segment the signs of COVID-19 in chest CT scans

COVID-19 has been detrimental in terms of the number of fatalities and rising number of critical patients across the world. According to the UNDP (United National Development Programme) Socio-Economic programme, aimed at the COVID-19 crisis, the pandemic is far more than a health crisis: it is affecting societies and economies at their core. There has been greater developments recently in the chest X-ray-based imaging technique as part of the COVID-19 diagnosis especially using Convolution Neural Networks (CNN) for recognising and classifying images. However, given the limitation of supervised labelled imaging data, the classification and predictive risk modelling of medical diagnosis tend to compromise. This paper aims to identify and monitor the effects of COVID-19 on the human lungs by employing Deep Neural Networks on axial CT (Chest Computed Tomography) scan of lungs. We have adopted Mask RCNN, with ResNet50 and ResNet101 as its backbone, to segment the regions, affected by COVID-19 coronavirus. Using the regions of human lungs, where symptoms have manifested, the model classifies condition of the patient as either "Mild" or "Alarming". Moreover, the model is d

preprint2020arXiv

iCaps: An Interpretable Classifier via Disentangled Capsule Networks

We propose an interpretable Capsule Network, iCaps, for image classification. A capsule is a group of neurons nested inside each layer, and the one in the last layer is called a class capsule, which is a vector whose norm indicates a predicted probability for the class. Using the class capsule, existing Capsule Networks already provide some level of interpretability. However, there are two limitations which degrade its interpretability: 1) the class capsule also includes classification-irrelevant information, and 2) entities represented by the class capsule overlap. In this work, we address these two limitations using a novel class-supervised disentanglement algorithm and an additional regularizer, respectively. Through quantitative and qualitative evaluations on three datasets, we demonstrate that the resulting classifier, iCaps, provides a prediction along with clear rationales behind it with no performance degradation.

preprint2020arXiv

Grasping Detection Network with Uncertainty Estimation for Confidence-Driven Semi-Supervised Domain Adaptation

Data-efficient domain adaptation with only a few labelled data is desired for many robotic applications, e.g., in grasping detection, the inference skill learned from a grasping dataset is not universal enough to directly apply on various other daily/industrial applications. This paper presents an approach enabling the easy domain adaptation through a novel grasping detection network with confidence-driven semi-supervised learning, where these two components deeply interact with each other. The proposed grasping detection network specially provides a prediction uncertainty estimation mechanism by leveraging on Feature Pyramid Network (FPN), and the mean-teacher semi-supervised learning utilizes such uncertainty information to emphasizing the consistency loss only for those unlabelled data with high confidence, which we referred it as the confidence-driven mean teacher. This approach largely prevents the student model to learn the incorrect/harmful information from the consistency loss, which speeds up the learning progress and improves the model accuracy. Our results show that the proposed network can achieve high success rate on the Cornell grasping dataset, and for domain adaptat

preprint2020arXiv

RespVAD: Voice Activity Detection via Video-Extracted Respiration Patterns

Voice Activity Detection (VAD) refers to the task of identification of regions of human speech in digital signals such as audio and video. While VAD is a necessary first step in many speech processing systems, it poses challenges when there are high levels of ambient noise during the audio recording. To improve the performance of VAD in such conditions, several methods utilizing the visual information extracted from the region surrounding the mouth/lip region of the speakers' video recording have been proposed. Even though these provide advantages over audio-only methods, they depend on faithful extraction of lip/mouth regions. Motivated by these, a new paradigm for VAD based on the fact that respiration forms the primary source of energy for speech production is proposed. Specifically, an audio-independent VAD technique using the respiration pattern extracted from the speakers' video is developed. The Respiration Pattern is first extracted from the video focusing on the abdominal-thoracic region of a speaker using an optical flow based method. Subsequently, voice activity is detected from the respiration pattern signal using neural sequence-to-sequence prediction models. T

preprint2020arXiv

Towards Robust Neural Vocoding for Speech Generation: A Survey

Recently, neural vocoders have been widely used in speech synthesis tasks, including text-to-speech and voice conversion. However, when encountering data distribution mismatch between training and inference, neural vocoders trained on real data often degrade in voice quality for unseen scenarios. In this paper, we train four common neural vocoders, including WaveNet, WaveRNN, FFTNet, Parallel WaveGAN alternately on five different datasets. To study the robustness of neural vocoders, we evaluate the models using acoustic features from seen/unseen speakers, seen/unseen languages, a text-to-speech model, and a voice conversion model. We found out that the speaker variety is much more important for achieving a universal vocoder than the language. Through our experiments, we show that WaveNet and WaveRNN are more suitable for text-to-speech models, while Parallel WaveGAN is more suitable for voice conversion applications. Great amount of subjective MOS results in naturalness for all vocoders are presented for future studies.

preprint2020arXiv

Hop Sampling: A Simple Regularized Graph Learning for Non-Stationary Environments

Graph representation learning is gaining popularity in a wide range of applications, such as social networks analysis, computational biology, and recommender systems. However, different with positive results from many academic studies, applying graph neural networks (GNNs) in a real-world application is still challenging due to non-stationary environments. The underlying distribution of streaming data changes unexpectedly, resulting in different graph structures (a.k.a., concept drift). Therefore, it is essential to devise a robust graph learning technique so that the model does not overfit to the training graphs. In this work, we present Hop Sampling, a straightforward regularization method that can effectively prevent GNNs from overfishing. The hop sampling randomly selects the number of propagation steps rather than fixing it, and by doing so, it encourages the model to learn meaningful node representation for all intermediate propagation layers and to experience a variety of plausible graphs that are not in the training set. Particularly, we describe the use case of our method in recommender systems, a representative example of the real-world non-stationary case. We evaluated h

preprint2020arXiv

Transformer based Multilingual document Embedding model

One of the current state-of-the-art multilingual document embedding model LASER is based on the bidirectional LSTM neural machine translation model. This paper presents a transformer-based sentence/document embedding model, T-LASER, which makes three significant improvements. Firstly, the BiLSTM layers is replaced by the attention-based transformer layers, which is more capable of learning sequential patterns in longer texts. Secondly, due to the absence of recurrence, T-LASER enables faster parallel computations in the encoder to generate the text embedding. Thirdly, we augment the NMT translation loss function with an additional novel distance constraint loss. This distance constraint loss would further bring the embeddings of parallel sentences close together in the vector space; we call the T-LASER model trained with distance constraint, cT-LASER. Our cT-LASER model significantly outperforms both BiLSTM-based LASER and the simpler transformer-based T-LASER.

preprint2020arXiv

ADIC: Anomaly Detection Integrated Circuit in 65nm CMOS utilizing Approximate Computing

In this paper, we present a low-power anomaly detection integrated circuit (ADIC) based on a one-class classifier (OCC) neural network. The ADIC achieves low-power operation through a combination of (a) careful choice of algorithm for online learning and (b) approximate computing techniques to lower average energy. In particular, online pseudoinverse update method (OPIUM) is used to train a randomized neural network for quick and resource efficient learning. An additional 42% energy saving can be achieved when a lighter version of OPIUM method is used for training with the same number of data samples lead to no significant compromise on the quality of inference. Instead of a single classifier with large number of neurons, an ensemble of K base learner approach is chosen to reduce learning memory by a factor of K. This also enables approximate computing by dynamically varying the neural network size based on anomaly detection. Fabricated in 65nm CMOS, the ADIC has K = 7 Base Learners (BL) with 32 neurons in each BL and dissipates 11.87pJ/OP and 3.35pJ/OP during learning and inference respectively at Vdd = 0.75V when all 7 BLs are enabled. Further, evaluated on the NASA bearing datas

preprint2020arXiv

Transforming Probabilistic Programs for Model Checking

Probabilistic programming is perfectly suited to reliable and transparent data science, as it allows the user to specify their models in a high-level language without worrying about the complexities of how to fit the models. Static analysis of probabilistic programs presents even further opportunities for enabling a high-level style of programming, by automating time-consuming and error-prone tasks. We apply static analysis to probabilistic programs to automate large parts of two crucial model checking methods: Prior Predictive Checks and Simulation-Based Calibration. Our method transforms a probabilistic program specifying a density function into an efficient forward-sampling form. To achieve this transformation, we extract a factor graph from a probabilistic program using static analysis, generate a set of proposal directed acyclic graphs using a SAT solver, select a graph which will produce provably correct sampling code, then generate one or more sampling programs. We allow minimal user interaction to broaden the scope of application beyond what is possible with static analysis alone. We present an implementation targeting the popular Stan probabilistic programming language, au