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Nicolas Bousquet

Nicolas Bousquet contributes to research discovery and scholarly infrastructure.

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Published work

17 published item(s)

preprint2026arXiv

Generalized Functional ANOVA in Closed-Form: A Unified View of Additive Explanations

The functional ANOVA, or Hoeffding decomposition, provides a principled framework for interpretability by decomposing a model prediction into main effects and higher-order interactions. For independent inputs, this classical decomposition is explicit. It is closely connected to SHAP values, generalized additive models, and orthogonal polynomial expansions, and therefore constitutes a fundamental tool for additive explainability. In the more general and realistic dependent setting, however, obtaining a tractable representation and estimating the decomposition from data remain challenging. In this work, we address this problem for continuous inputs. By combining Hilbert space methods with the generalized functional ANOVA, we build an explicit decomposition Riesz Basis allowing to easily compute the decomposition. Our formulation recovers the classical independent case and its associated orthogonal decomposition. Building on this representation, we propose a simple but mighty algorithm to estimate the decomposition from a data sample in a model-agnostic setting and we compare it empirically with several state-of-the-art explanation methods, demonstrating the power of the approach.

preprint2023arXiv

Extremal Independent Set Reconfiguration

The independent set reconfiguration problem asks whether one can transform one given independent set of a graph into another, by changing vertices one by one in such a way the intermediate sets remain independent. Extremal problems on independent sets are widely studied: for example, it is well known that an $n$-vertex graph has at most $3^{n/3}$ maximum independent sets (and this is tight). This paper investigates the asymptotic behavior of maximum possible length of a shortest reconfiguration sequence for independent sets of size $k$ among all $n$-vertex graphs. We give a tight bound for $k=2$. We also provide a subquadratic upper bound (using the hypergraph removal lemma) as well as an almost tight construction for $k=3$. We generalize our results for larger values of $k$ by proving an $n^{2\lfloor k/3 \rfloor}$ lower bound.

preprint2023arXiv

On the coalitional decomposition of parameters of interest

Understanding the behavior of a black-box model with probabilistic inputs can be based on the decomposition of a parameter of interest (e.g., its variance) into contributions attributed to each coalition of inputs (i.e., subsets of inputs). In this paper, we produce conditions for obtaining unambiguous and interpretable decompositions of very general parameters of interest. This allows to recover known decompositions, holding under weaker assumptions than stated in the literature.

preprint2022arXiv

A survey on the parameterized complexity of the independent set and (connected) dominating set reconfiguration problems

A graph vertex-subset problem defines which subsets of the vertices of an input graph are feasible solutions. We view a feasible solution as a set of tokens placed on the vertices of the graph. A reconfiguration variant of a vertex-subset problem asks, given two feasible solutions of size $k$, whether it is possible to transform one into the other by a sequence of token slides (along edges of the graph) or token jumps (between arbitrary vertices of the graph) such that each intermediate set remains a feasible solution of size $k$. Many algorithmic questions present themselves in the form of reconfiguration problems: Given the description of an initial system state and the description of a target state, is it possible to transform the system from its initial state into the target one while preserving certain properties of the system in the process? Such questions have received a substantial amount of attention under the so-called combinatorial reconfiguration framework. We consider reconfiguration variants of three fundamental underlying graph vertex-subset problems, namely Independent Set, Dominating Set, and Connected Dominating Set. We survey both older and more recent work on the parameterized complexity of all three problems when parameterized by the number of tokens $k$. The emphasis will be on positive results and the most common techniques for the design of fixed-parameter tractable algorithms.

preprint2022arXiv

Galactic Token Sliding

Given a graph $G$ and two independent sets $I_s$ and $I_t$ of size $k$, the independent set reconfiguration problem asks whether there exists a sequence of $k$-sized independent sets $I_s = I_0, I_1, I_2, \ldots, I_\ell = I_t$ such that each independent set is obtained from the previous one using a so-called reconfiguration step. Viewing each independent set as a collection of $k$ tokens placed on the vertices of a graph $G$, the two most studied reconfiguration steps are token jumping and token sliding. In the token jumping variant of the problem, a single step allows a token to jump from one vertex to any other vertex in the graph. In the token sliding variant, a token is only allowed to slide from a vertex to one of its neighbors. Like the independent set problem, both of the aforementioned problems are known to be W[1]-hard on general graphs. A very fruitful line of research has showed that the independent set problem becomes fixed-parameter tractable when restricted to sparse graph classes, such as planar, bounded treewidth, nowhere-dense, and all the way to biclique-free graphs. Over a series of papers, the same was shown to hold for the token jumping problem. As for the token sliding problem, which is mentioned in most of these papers, almost nothing is known beyond the fact that the problem is polynomial-time solvable on trees and interval graphs. We remedy this situation by introducing a new model for the reconfiguration of independent sets, which we call galactic reconfiguration. Using this new model, we show that (standard) token sliding is fixed-parameter tractable on graphs of bounded degree, planar graphs, and chordal graphs of bounded clique number. We believe that the galactic reconfiguration model is of independent interest and could potentially help in resolving the remaining open questions concerning the (parameterized) complexity of token sliding.

preprint2022arXiv

Locating-dominating sets: from graphs to oriented graphs

A locating-dominating set in an undirected graph is a subset of vertices $S$ such that $S$ is dominating and for every $u,v \notin S$, we have $N(u)\cap S\ne N(v)\cap S$. In this paper, we consider the oriented version of the problem. A locating-dominating set in an oriented graph is a set $S$ such that for every $w\in V$, $N[w]^-\cap S=\emptyset$ and for each pair of vertices $u,v\in V\setminus S$, $N^-(u)\cap S\ne N^-(v)\cap S$. We consider the following two parameters. Given an undirected graph $G$, we look for $\overset{\rightarrow}γ_{LD}(G)$ ($\overset{\rightarrow}Γ_{LD}(G))$ which is the size of the smallest (largest) optimal locating-dominating set over all orientations of $G$. In particular, if $D$ is an orientation of $G$, then $\overset{\rightarrow}γ_{LD}(G)\leqγ_{LD}(D)\leq\overset{\rightarrow}Γ_{LD}(G)$. For the best orientation, we prove that, for every twin-free graph $G$ on $n$ vertices, $\overset{\rightarrow}γ_{LD}(G)\le n/2$ proving a ``directed version'' of a conjecture on $γ_{LD}(G)$. Moreover, we give some bounds for $\overset{\rightarrow}γ_{LD}(G)$ on many graph classes and drastically improve the value $n/2$ for (almost) $d$-regular graphs by showing that $\overset{\rightarrow}γ_{LD}(G)\in O(\log d/d\cdot n)$ using a probabilistic argument. While $\overset{\rightarrow}γ_{LD}(G)\leqγ_{LD}(G)$ holds for every graph $G$, we give some graph classes graphs for which $\overset{\rightarrow}Γ_{LD}(G)\geqγ_{LD}(G)$ and some for which $\overset{\rightarrow}Γ_{LD}(G)\leq γ_{LD}(G)$. We also give general bounds for $\overset{\rightarrow}Γ_{LD}(G)$. Finally, we show that for many graph classes $\overset{\rightarrow}Γ_{LD}(G)$ is polynomial on $n$ but we leave open the question whether there exist graphs with $\overset{\rightarrow}Γ_{LD}(G)\in O(\log n)$.

preprint2022arXiv

Metric dimension on sparse graphs and its applications to zero forcing sets

The metric dimension dim(G) of a graph $G$ is the minimum cardinality of a subset $S$ of vertices of $G$ such that each vertex of $G$ is uniquely determined by its distances to $S$. It is well-known that the metric dimension of a graph can be drastically increased by the modification of a single edge. Our main result consists in proving that the increase of the metric dimension of an edge addition can be amortized in the sense that if the graph consists of a spanning tree $T$ plus $c$ edges, then the metric dimension of $G$ is at most the metric dimension of $T$ plus $6c$. We then use this result to prove a weakening of a conjecture of Eroh et al. The zero forcing number $Z(G)$ of $G$ is the minimum cardinality of a subset $S$ of black vertices (whereas the other vertices are colored white) of $G$ such that all the vertices will turned black after applying finitely many times the following rule: a white vertex is turned black if it is the only white neighbor of a black vertex. Eroh et al. conjectured that, for any graph $G$, $dim(G)\leq Z(G) + c(G)$, where $c(G)$ is the number of edges that have to be removed from $G$ to get a forest. They proved the conjecture is true for trees and unicyclic graphs. We prove a weaker version of the conjecture: $dim(G)\leq Z(G)+6c(G)$ holds for any graph. We also prove that the conjecture is true for graphs with edge disjoint cycles, widely generalizing the unicyclic result of Eroh et al.

preprint2022arXiv

Reconfiguration of Spanning Trees with Degree Constraint or Diameter Constraint

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields that such a transformation always exists if we have no constraints on spanning trees. In this paper, we wish to find a transformation which passes through only spanning trees satisfying some constraint. Our focus is bounding either the maximum degree or the diameter of spanning trees, and we give the following results. The problem with a lower bound on maximum degree is solvable in polynomial time, while the problem with an upper bound on maximum degree is PSPACE-complete. The problem with a lower bound on diameter is NP-hard, while the problem with an upper bound on diameter is solvable in polynomial time.

preprint2022arXiv

Square coloring planar graphs with automatic discharging

The discharging method is a powerful proof technique, especially for graph coloring problems. Its major downside is that it often requires lengthy case analyses, which are sometimes given to a computer for verification. However, it is much less common to use a computer to actively look for a discharging proof. In this paper, we use a Linear Programming approach to automatically look for a discharging proof. While our system is not entirely autonomous, we manage to make some progress towards Wegner's conjecture for distance-$2$ coloring of planar graphs, by showing that $12$ colors are sufficient to color at distance $2$ every planar graph with maximum degree $4$.

preprint2022arXiv

What can be certified compactly?

Local certification consists in assigning labels (called \emph{certificates}) to the nodes of a network to certify a property of the network or the correctness of a data structure distributed on the network. The verification of this certification must be local: a node typically sees only its neighbors in the network. The main measure of performance of a certification is the size of its certificates. In 2011, Göös and Suomela identified $Θ(\log n)$ as a special certificate size: below this threshold little is possible, and several key properties do have certifications of this type. A certification with such small certificates is now called a \emph{compact local certification}, and it has become the gold standard of the area, similarly to polynomial time for centralized computing. A major question is then to understand which properties have $O(\log n)$ certificates, or in other words: what is the power of compact local certification? Recently, a series of papers have proved that several well-known network properties have compact local certifications: planarity, bounded-genus, etc. But one would like to have more general results, \emph{i.e.} meta-theorems. In the analogue setting of polynomial-time centralized algorithms, a very fruitful approach has been to prove that restricted types of problems can be solved in polynomial time in graphs with restricted structures. These problems are typically those that can be expressed in some logic, and the graph structures are whose with bounded width or depth parameters. We take a similar approach and prove the first meta-theorems for local certification. (See the abstract of the pdf for more details.)

preprint2021arXiv

TS-Reconfiguration of Dominating Sets in circle and circular-arc graphs

We study the dominating set reconfiguration problem with the token sliding rule. It consists, given a graph G=(V,E) and two dominating sets D_s and D_t of G, in determining if there exists a sequence S=<D_1:=D_s,...,D_l:=D_t> of dominating sets of G such that for any two consecutive dominating sets D_r and D_{r+1} with r<t, D_{r+1}=(D_r\ u) U v, where uv is an edge of G. In a recent paper, Bonamy et al studied this problem and raised the following questions: what is the complexity of this problem on circular arc graphs? On circle graphs? In this paper, we answer both questions by proving that the problem is polynomial on circular-arc graphs and PSPACE-complete on circle graphs.

preprint2020arXiv

A note on the simultaneous edge coloring

Let $G=(V,E)$ be a graph. A (proper) $k$-edge-coloring is a coloring of the edges of $G$ such that any pair of edges sharing an endpoint receive distinct colors. A classical result of Vizing ensures that any simple graph $G$ admits a $(Δ(G)+1)$-edge coloring where $Δ(G)$ denotes the maximum degreee of $G$. Recently, Cabello raised the following question: given two graphs $G_1,G_2$ of maximum degree $Δ$ on the same set of vertices $V$, is it possible to edge-color their (edge) union with $Δ+2$ colors in such a way the restriction of $G$ to respectively the edges of $G_1$ and the edges of $G_2$ are edge-colorings? More generally, given $\ell$ graphs, how many colors do we need to color their union in such a way the restriction of the coloring to each graph is proper? In this short note, we prove that we can always color the union of the graphs $G_1,\ldots,G_\ell$ of maximum degree $Δ$ with $Ω(\sqrt{\ell} \cdot Δ)$ colors and that there exist graphs for which this bound is tight up to a constant multiplicative factor. Moreover, for two graphs, we prove that at most $\frac 32 Δ+4$ colors are enough which is, as far as we know, the best known upper bound.

preprint2020arXiv

Linear transformations between dominating sets in the TAR-model

Given a graph $G$ and an integer $k$, a token addition and removal ({\sf TAR} for short) reconfiguration sequence between two dominating sets $D_{\sf s}$ and $D_{\sf t}$ of size at most $k$ is a sequence $S= \langle D_0 = D_{\sf s}, D_1 \ldots, D_\ell = D_{\sf t} \rangle$ of dominating sets of $G$ such that any two consecutive dominating sets differ by the addition or deletion of one vertex, and no dominating set has size bigger than $k$. We first improve a result of Haas and Seyffarth, by showing that if $k=Γ(G)+α(G)-1$ (where $Γ(G)$ is the maximum size of a minimal dominating set and $α(G)$ the maximum size of an independent set), then there exists a linear {\sf TAR} reconfiguration sequence between any pair of dominating sets. We then improve these results on several graph classes by showing that the same holds for $K_{\ell}$-minor free graph as long as $k \ge Γ(G)+O(\ell \sqrt{\log \ell})$ and for planar graphs whenever $k \ge Γ(G)+3$. Finally, we show that if $k=Γ(G)+tw(G)+1$, then there also exists a linear transformation between any pair of dominating sets.

preprint2020arXiv

Reconfiguration of Spanning Trees with Many or Few Leaves

Let $G$ be a graph and $T_1,T_2$ be two spanning trees of $G$. We say that $T_1$ can be transformed into $T_2$ via an edge flip if there exist two edges $e \in T_1$ and $f$ in $T_2$ such that $T_2= (T_1 \setminus e) \cup f$. Since spanning trees form a matroid, one can indeed transform a spanning tree into any other via a sequence of edge flips, as observed by Ito et al. We investigate the problem of determining, given two spanning trees $T_1,T_2$ with an additional property $Π$, if there exists an edge flip transformation from $T_1$ to $T_2$ keeping property $Π$ all along. First we show that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at most $k$ (for any fixed $k \ge 3$) leaves is PSPACE-complete. We then prove that determining if there exists a transformation from $T_1$ to $T_2$ such that all the trees of the sequence have at least $k$ leaves (where $k$ is part of the input) is PSPACE-complete even restricted to split, bipartite or planar graphs. We complete this result by showing that the problem becomes polynomial for cographs, interval graphs and when $k=n-2$.

preprint2017arXiv

An innovative solution for breast cancer textual big data analysis

The digitalization of stored information in hospitals now allows for the exploitation of medical data in text format, as electronic health records (EHRs), initially gathered for other purposes than epidemiology. Manual search and analysis operations on such data become tedious. In recent years, the use of natural language processing (NLP) tools was highlighted to automatize the extraction of information contained in EHRs, structure it and perform statistical analysis on this structured information. The main difficulties with the existing approaches is the requirement of synonyms or ontology dictionaries, that are mostly available in English only and do not include local or custom notations. In this work, a team composed of oncologists as domain experts and data scientists develop a custom NLP-based system to process and structure textual clinical reports of patients suffering from breast cancer. The tool relies on the combination of standard text mining techniques and an advanced synonym detection method. It allows for a global analysis by retrieval of indicators such as medical history, tumor characteristics, therapeutic responses, recurrences and prognosis. The versatility of the method allows to obtain easily new indicators, thus opening up the way for retrospective studies with a substantial reduction of the amount of manual work. With no need for biomedical annotators or pre-defined ontologies, this language-agnostic method reached an good extraction accuracy for several concepts of interest, according to a comparison with a manually structured file, without requiring any existing corpus with local or new notations.