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Yifei Chen

Yifei Chen contributes to research discovery and scholarly infrastructure.

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Published work

14 published item(s)

preprint2026arXiv

Annotation-free deep learning for detection and segmentation of fetal germinal matrix-intraventricular hemorrhage in brain MRI

Background: Prenatal germinal matrix-intraventricular hemorrhage (GMH-IVH) is a leading cause of infant mortality and neurodevelopmental impairment. Manual diagnosis and lesion segmentation are labor-intensive and error-prone. Deep learning models offer potential for automation but typically require large annotated datasets, which are challenging to obtain. Purpose: To develop and validate an annotation-free deep learning framework for automated detection and segmentation of GMH-IVH on brain MRI. Materials and Methods: This retrospective study analyzed 2D T2-weighted MRI data from pregnant women collected from October 2015 to October 2023 at one hospital (internal validation) and two hospitals (external validation). Eligible participants included healthy fetuses and those with GMH-IVH. FreeHemoSeg was developed and trained using pseudo GMH-IVH images synthesized from normal fetal data guided by medical priors. Primary outcomes included diagnostic accuracy (area under the ROC curve [AUROC], sensitivity, specificity) and segmentation accuracy (Dice similarity coefficient [DSC]). A reader study evaluated clinical utility. Results: A total of 1674 stacks from 558 pregnant women were analyzed. FreeHemoSeg achieved the highest performance in both internal (sensitivity: 0.914, 95% CI 0.869-0.945; specificity: 0.966, 95% CI 0.946-0.978; DSC: 0.559, 95% CI 0.546-0.571) and external validation (sensitivity: 0.824, 95% CI 0.739-0.885; specificity: 0.943, 95% CI 0.913-0.964; DSC: 0.512, 95% CI 0.497-0.526), outperforming supervised and unsupervised methods. FreeHemoSeg assistance improved radiologists' sensitivity (from 0.882 to 0.941-1.000) and diagnostic confidence while reducing interpretation time by 16.0-52.7%. Conclusion: FreeHemoSeg accurately detects and localizes fetal brain hemorrhages without annotated training data, enabling earlier diagnosis and supporting timely clinical management.

preprint2026arXiv

ET-Agent: Incentivizing Effective Tool-Integrated Reasoning Agent via Behavior Calibration

Large Language Models (LLMs) can extend their parameter knowledge limits by adopting the Tool-Integrated Reasoning (TIR) paradigm. However, existing LLM-based agent training framework often focuses on answers' accuracy, overlooking specific alignment for behavior patterns. Consequently, agent often exhibits ineffective actions during TIR tasks, such as redundant and insufficient tool calls. How to calibrate erroneous behavioral patterns when executing TIR tasks, thereby exploring effective trajectories, remains an open-ended problem. In this paper, we propose ET-Agent, a training framework for calibrating agent's tool-use behavior through two synergistic perspectives: Self-evolving Data Flywheel and Behavior Calibration Training. Specifically, we introduce a self-evolutionary data flywheel to generate enhanced data, used to fine-tune LLM to improve its exploration ability. Based on this, we implement an two-phases behavior-calibration training framework. It is designed to progressively calibrate erroneous behavioral patterns to optimal behaviors. Further in-depth experiments confirm the superiority of \ourmodel{} across multiple dimensions, including correctness, efficiency, reasoning conciseness, and tool execution accuracy. Our ET-Agent framework provides practical insights for research in the TIR field. Codes can be found in https://github.com/asilverlight/ET-Agent

preprint2026arXiv

HADAR-Based Thermal Infrared Hyperspectral Image Restoration

Thermal-infrared (TIR) hyperspectral imagery (HSI) provides critical scene information for various applications. However, its practical utility is severely limited by unique sensor degradations beyond the capabilities of existing restoration methods, which are ignorant of underlying thermal physics. Here, we propose HAIR (HADAR-based Image Restoration) as a physics-driven framework for ground-based TIR-HSI restoration. HAIR utilizes the HADAR rendering equation (HRE) and combines it with the atmospheric downwelling radiative transfer equation (RTE) to model TIR-HSI using temperature, emissivity, and texture (TeX) physical triplets. This physical model leads to a TeX decompose-synthesize strategy that guarantees physical consistency and spatio-spectral noise resilience, in stark contrast to existing approaches. Moreover, our framework uses a forward-modeled atmospheric downwelling reference, along with spectral smoothness of emissivity and blackbody radiation, to enable spectral calibration and generation that would otherwise be elusive. Our extensive experiments on the outdoor DARPA Invisible Headlights dataset and in-lab FTIR measurements show that HAIR consistently outperforms state-of-the-art methods across denoising, inpainting, spectral calibration, and spectral super-resolution, establishing a benchmark in objective accuracy and visual quality.

preprint2026arXiv

INFANiTE: Implicit Neural representation for high-resolution Fetal brain spatio-temporal Atlas learNing from clinical Thick-slicE MRI

Spatio-temporal fetal brain atlases are important for characterizing normative neurodevelopment and identifying congenital anomalies. However, existing atlas construction pipelines necessitate days for slice-to-volume reconstruction (SVR) to generate high-resolution 3D brain volumes and several additional days for iterative volume registration, thereby rendering atlas construction from large-scale cohorts prohibitively impractical. We address these limitations with INFANiTE, an Implicit Neural Representation (INR) framework for high-resolution Fetal brain spatio-temporal Atlas learNing from clinical Thick-slicE MRI scans, bypassing both the costly SVR and the iterative non-rigid registration steps entirely, thereby substantially accelerating atlas construction. Extensive experiments demonstrate that INFANiTE outperforms existing baselines in subject consistency, reference fidelity, intrinsic quality and biological plausibility, even under challenging sparse-data settings. Additionally, INFANiTE reduces the end-to-end processing time (i.e., from raw scans to the final atlas) from days to hours compared to the traditional 3D volume-based pipeline (e.g., SyGN), facilitating large-scale population-level fetal brain analysis. Our code is publicly available at: https://anonymous.4open.science/r/INFANiTE-5D74

preprint2026arXiv

ISEP: Implicit Support Expansion for Offline Reinforcement Learning via Stochastic Policy Optimization

Offline reinforcement learning methods typically enforce strict constraints to ensure safety; yet this rigidity often prevents the discovery of optimal behaviors outside the immediate support of the behavior policy. To address this, we propose Implicit Support Expansion via stochastic Policy optimization (ISEP), which leverages a value function interpolated between in-distribution data and policy samples to implicitly expand the feasible action support. This mechanism "densifies" high-reward regions, creating a navigable path for policy improvement while theoretically guaranteeing bounded value error. However, optimizing against this expanded support creates a multimodal landscape where standard deterministic averaging leads to mode collapse and invalid actions. ISEP mitigates this via a stochastic action selection strategy, optimizing the policy by stochastically alternating between conservative cloning and optimistic expansion signals. We instantiate this framework as ISEP-FM using Conditional Flow Matching utilizing classifier-free guidance to effectively capture the interpolated value signal.

preprint2026arXiv

SMc2f: Robust Scenario Mining for Robotic Autonomy from Coarse to Fine

The safety validation of autonomous robotic vehicles hinges on systematically testing their planning and control stacks against rare, safety-critical scenarios. Mining these long-tail events from massive real-world driving logs is therefore a critical step in the robotic development lifecycle. The goal of the Scenario Mining task is to retrieve useful information to enable targeted re-simulation, regression testing, and failure analysis of the robot's decision-making algorithms. RefAV, introduced by the Argoverse team, is an end-to-end framework that uses large language models (LLMs) to spatially and temporally localize scenarios described in natural language. However, this process performs retrieval on trajectory labels, ignoring the direct connection between natural language and raw RGB images, which runs counter to the intuition of video retrieval; it also depends on the quality of upstream 3D object detection and tracking. Further, inaccuracies in trajectory data lead to inaccuracies in downstream spatial and temporal localization. To address these issues, we propose Robust Scenario Mining for Robotic Autonomy from Coarse to Fine (SMc2f), a coarse-to-fine pipeline that employs vision-language models (VLMs) for coarse image-text filtering, builds a database of successful mining cases on top of RefAV and automatically retrieves exemplars to few-shot condition the LLM for more robust retrieval, and introduces text-trajectory contrastive learning to pull matched pairs together and push mismatched pairs apart in a shared embedding space, yielding a fine-grained matcher that refines the LLM's candidate trajectories. Experiments on public datasets demonstrate substantial gains in both retrieval quality and efficiency.

preprint2026arXiv

Uni-OPD: Unifying On-Policy Distillation with a Dual-Perspective Recipe

On-policy distillation (OPD) has recently emerged as an effective post-training paradigm for consolidating the capabilities of specialized expert models into a single student model. Despite its empirical success, the conditions under which OPD yields reliable improvement remain poorly understood. In this work, we identify two fundamental bottlenecks that limit effective OPD: insufficient exploration of informative states and unreliable teacher supervision for student rollouts. Building on this insight, we propose Uni-OPD, a unified OPD framework that generalizes across Large Language Models (LLMs) and Multimodal Large Language Models (MLLMs), centered on a dual-perspective optimization strategy. Specifically, from the student's perspective, we adopt two data balancing strategies to promote exploration of informative student-generated states during training. From the teacher's perspective, we show that reliable supervision hinges on whether aggregated token-level guidance remains order-consistent with the outcome reward. To this end, we develop an outcome-guided margin calibration mechanism to restore order consistency between correct and incorrect trajectories. We conduct extensive experiments on 5 domains and 16 benchmarks covering diverse settings, including single-teacher and multi-teacher distillation across LLMs and MLLMs, strong-to-weak distillation, and cross-modal distillation. Our results verify the effectiveness and versatility of Uni-OPD and provide practical insights into reliable OPD.

preprint2025arXiv

FDP: A Frequency-Decomposition Preprocessing Pipeline for Unsupervised Anomaly Detection in Brain MRI

Due to the diversity of brain anatomy and the scarcity of annotated data, supervised anomaly detection for brain MRI remains challenging, driving the development of unsupervised anomaly detection (UAD) approaches. Current UAD methods typically utilize artificially generated noise perturbations on healthy MRIs to train generative models for normal anatomy reconstruction, enabling anomaly detection via residual maps. However, such simulated anomalies lack the biophysical fidelity and morphological complexity characteristic of true clinical lesions. To advance UAD in brain MRI, we conduct the first systematic frequency-domain analysis of pathological signatures, revealing two key properties: (1) anomalies exhibit unique frequency patterns distinguishable from normal anatomy, and (2) low-frequency signals maintain consistent representations across healthy scans. These insights motivate our Frequency-Decomposition Preprocessing (FDP) framework, the first UAD method to leverage frequency-domain reconstruction for simultaneous pathology suppression and anatomical preservation. FDP can integrate seamlessly with existing anomaly simulation techniques, consistently enhancing detection performance across diverse architectures while maintaining diagnostic fidelity. Experimental results demonstrate that FDP consistently improves anomaly detection performance when integrated with existing methods. Notably, FDP achieves a 17.63% increase in DICE score with LDM while maintaining robust improvements across multiple baselines. The code is available at https://github.com/ls1rius/MRI_FDP.

preprint2024arXiv

SCUNet++: Swin-UNet and CNN Bottleneck Hybrid Architecture with Multi-Fusion Dense Skip Connection for Pulmonary Embolism CT Image Segmentation

Pulmonary embolism (PE) is a prevalent lung disease that can lead to right ventricular hypertrophy and failure in severe cases, ranking second in severity only to myocardial infarction and sudden death. Pulmonary artery CT angiography (CTPA) is a widely used diagnostic method for PE. However, PE detection presents challenges in clinical practice due to limitations in imaging technology. CTPA can produce noises similar to PE, making confirmation of its presence time-consuming and prone to overdiagnosis. Nevertheless, the traditional segmentation method of PE can not fully consider the hierarchical structure of features, local and global spatial features of PE CT images. In this paper, we propose an automatic PE segmentation method called SCUNet++ (Swin Conv UNet++). This method incorporates multiple fusion dense skip connections between the encoder and decoder, utilizing the Swin Transformer as the encoder. And fuses features of different scales in the decoder subnetwork to compensate for spatial information loss caused by the inevitable downsampling in Swin-UNet or other state-of-the-art methods, effectively solving the above problem. We provide a theoretical analysis of this method in detail and validate it on publicly available PE CT image datasets FUMPE and CAD-PE. The experimental results indicate that our proposed method achieved a Dice similarity coefficient (DSC) of 83.47% and a Hausdorff distance 95th percentile (HD95) of 3.83 on the FUMPE dataset, as well as a DSC of 83.42% and an HD95 of 5.10 on the CAD-PE dataset. These findings demonstrate that our method exhibits strong performance in PE segmentation tasks, potentially enhancing the accuracy of automatic segmentation of PE and providing a powerful diagnostic tool for clinical physicians. Our source code and new FUMPE dataset are available at https://github.com/JustlfC03/SCUNet-plusplus.

preprint2022arXiv

First Identification of New X-Ray Spectra of Mo39+, Mo40+, W43+, W44+ and W45+ on EAST

New high-resolution x-ray spectra of Mo39+, Mo40+, W43+, W44+ and W45+ have been carefully confirmed for the first time by use of the x-ray imaging crystal spectrometer (XCS) in Experimental Advanced Superconducting Tokamak (EAST) under various combined auxiliary heating plasmas conditions. Wavelength of these new x-ray spectra is ranged from 3.895 Å to 3.986 Å. When core electron temperature (Te0) reaches 6.0 keV, Mo39+ and Mo40+ lines of 3.9727, 3.9294 and 3.9480 Å can be effectively detected on XCS for EAST; meanwhile, line-integrated brightness of these spectral lines of Mo39+ and Mo40+ is very considerable when electron temperature reaches 12.9 keV. Multi-components spectral lines for W43+, W44+ and W45+ have also been identified when Te0 reaches 6 keV. Parts of spectral lines, such as Zn-1, Cu-2, Cu-4a, Cu-4d and Cu-5 lines of tungsten, are first observed experimentally. When electron temperature reaches 12.9 keV, line-integrated intensity for part of these spectral lines of W43+, W44+ and W45+ are considerable. These experimental results and theoretical predictions from FAC and FLYCHK codes are in good general agreement. These new spectral lines, obtained on XCS for EAST, are vital for deeply uncovering the mechanisms of ion and electron thermal, high-Z impurity and momentum (anomalous) transport to achieve the advanced steady-state operation scenarios for ITER and CFETR.

preprint2021arXiv

Photoionization-induced broadband dispersive wave generated in an Ar-filled hollow-core photonic crystal fiber

The resonance band in hollow-core photonic crystal fiber (HC-PCF), while leading to high-loss region in the fiber transmission spectrum, has been successfully used for generating phase-matched dispersive wave (DW). Here, we report that the spectral width of the resonance-induced DW can be largely broadened due to plasma-driven blueshifting soliton. In the experiment, we observed that in a short length of Ar-filled single-ring HC-PCF the soliton self-compression and photoionization effects caused a strong spectral blueshift of the pump pulse, changing the phase-matching condition of the DW emission process. Therefore, broadening of DW spectrum to the longer-wavelength side was obtained with several spectral peaks, which correspond to the generation of DW at different positions along the fiber. In the simulation, we used super-Gauss windows with different central wavelengths to filter out these DW spectral peaks, and studied the time-domain characteristics of these peaks respectively using Fourier transform method. The simulation results verified that these multiple-peaks on the DW spectrum have different delays in the time domain, agreeing well with our theoretical prediction. Remarkably, we found that the whole time-domain DW trace can be compressed to ~29 fs using proper chirp compensation. The experimental and numerical results reported here provide some insight into the resonance-induced DW generation process in gas-filled HC-PCFs, they could also pave the way to ultrafast pulse generation using DW-emission mechanism.

preprint2020arXiv

Nonparametric Structure Regularization Machine for 2D Hand Pose Estimation

Hand pose estimation is more challenging than body pose estimation due to severe articulation, self-occlusion and high dexterity of the hand. Current approaches often rely on a popular body pose algorithm, such as the Convolutional Pose Machine (CPM), to learn 2D keypoint features. These algorithms cannot adequately address the unique challenges of hand pose estimation, because they are trained solely based on keypoint positions without seeking to explicitly model structural relationship between them. We propose a novel Nonparametric Structure Regularization Machine (NSRM) for 2D hand pose estimation, adopting a cascade multi-task architecture to learn hand structure and keypoint representations jointly. The structure learning is guided by synthetic hand mask representations, which are directly computed from keypoint positions, and is further strengthened by a novel probabilistic representation of hand limbs and an anatomically inspired composition strategy of mask synthesis. We conduct extensive studies on two public datasets - OneHand 10k and CMU Panoptic Hand. Experimental results demonstrate that explicitly enforcing structure learning consistently improves pose estimation accuracy of CPM baseline models, by 1.17% on the first dataset and 4.01% on the second one. The implementation and experiment code is freely available online. Our proposal of incorporating structural learning to hand pose estimation requires no additional training information, and can be a generic add-on module to other pose estimation models.

preprint2020arXiv

Photoionization-assisted, high-efficiency emission of dispersive wave in gas-filled hollow-core photonic crystal fibers

We demonstrate that the phase-matched dispersive wave (DW) emission within the resonance band of a 25-cm-long gas-filled hollow-core photonic crystal fiber (HC-PCF) can be strongly enhanced by the photoionization effect of the pump pulse. In the experiments we observe that as the pulse energy increases, the pump pulse gradually shifts to shorter wavelengths due to soliton-plasma interactions. When the central wavelength of the blueshifting soliton is close to the resonance band of the HC-PCF, high-efficiency energy transfer from the pump light to the DW in the visible region can be obtained. During this DW emission process, we also observe that the spectral center of the DW gradually shifts to longer wavelengths leading to a slightly-increased DW bandwidth, which can be well explained as the consequence of phase-matched coupling between the pump pulse and the DW. In particular, at an input pulse energy of 6 uJ, the spectral ratio of the DW at the fiber output is measured to be as high as ~53% together with a conversion efficiency of ~19%. These experimental results, explained by numerical simulations, pave the way to high-brightness light sources based on high-efficiency frequency-upconversion processes in gas-filled HC-PCFs.

preprint2020arXiv

Rotation-invariant Mixed Graphical Model Network for 2D Hand Pose Estimation

In this paper, we propose a new architecture named Rotation-invariant Mixed Graphical Model Network (R-MGMN) to solve the problem of 2D hand pose estimation from a monocular RGB image. By integrating a rotation net, the R-MGMN is invariant to rotations of the hand in the image. It also has a pool of graphical models, from which a combination of graphical models could be selected, conditioning on the input image. Belief propagation is performed on each graphical model separately, generating a set of marginal distributions, which are taken as the confidence maps of hand keypoint positions. Final confidence maps are obtained by aggregating these confidence maps together. We evaluate the R-MGMN on two public hand pose datasets. Experiment results show our model outperforms the state-of-the-art algorithm which is widely used in 2D hand pose estimation by a noticeable margin.