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Published work

44 published item(s)

preprint2026arXiv

Pest-Thinker: Learning to Think and Reason like Entomologists via Reinforcement Learning

Pest-induced crop losses pose a major threat to global food security and sustainable agricultural development. While recent advances in Multimodal Large Language Models (MLLMs) have shown strong potential for visual understanding and smart agriculture, their direct application to pest recognition remains limited due to the domain's unique challenges such as high inter-species complexity, intra-species variability, and the scarcity of expert-annotated data. In this work, we introduce Pest-Thinker, a knowledge-driven reinforcement learning (RL) framework that enables MLLMs to reason over fine-grained pest morphology. We first construct two high-definition pest benchmarks, QFSD and AgriInsect, comprising diverse species and expert-annotated morphological traits. Leveraging these datasets, we synthesize Chain-of-Thought (CoT) reasoning trajectories to facilitate structured learning of pest-specific visual cues through Supervised Fine-Tuning (SFT). Subsequently, we employ Group Relative Policy Optimization (GRPO) with a novel feature reward that guides the model to focus on observable morphological evidence, assessed by an LLM-as-a-Judge strategy. Extensive experiments demonstrate that Pest-Thinker substantially improves both in-domain and out-of-domain morphological understanding, marking a step toward expert-level visual reasoning for intelligent agricultural pest analysis. The datasets and source code are available upon acceptance.

preprint2024arXiv

Enhancing RAW-to-sRGB with Decoupled Style Structure in Fourier Domain

RAW to sRGB mapping, which aims to convert RAW images from smartphones into RGB form equivalent to that of Digital Single-Lens Reflex (DSLR) cameras, has become an important area of research. However, current methods often ignore the difference between cell phone RAW images and DSLR camera RGB images, a difference that goes beyond the color matrix and extends to spatial structure due to resolution variations. Recent methods directly rebuild color mapping and spatial structure via shared deep representation, limiting optimal performance. Inspired by Image Signal Processing (ISP) pipeline, which distinguishes image restoration and enhancement, we present a novel Neural ISP framework, named FourierISP. This approach breaks the image down into style and structure within the frequency domain, allowing for independent optimization. FourierISP is comprised of three subnetworks: Phase Enhance Subnet for structural refinement, Amplitude Refine Subnet for color learning, and Color Adaptation Subnet for blending them in a smooth manner. This approach sharpens both color and structure, and extensive evaluations across varied datasets confirm that our approach realizes state-of-the-art results. Code will be available at ~\url{https://github.com/alexhe101/FourierISP}.

preprint2022arXiv

EfficientNeRF: Efficient Neural Radiance Fields

Neural Radiance Fields (NeRF) has been wildly applied to various tasks for its high-quality representation of 3D scenes. It takes long per-scene training time and per-image testing time. In this paper, we present EfficientNeRF as an efficient NeRF-based method to represent 3D scene and synthesize novel-view images. Although several ways exist to accelerate the training or testing process, it is still difficult to much reduce time for both phases simultaneously. We analyze the density and weight distribution of the sampled points then propose valid and pivotal sampling at the coarse and fine stage, respectively, to significantly improve sampling efficiency. In addition, we design a novel data structure to cache the whole scene during testing to accelerate the rendering speed. Overall, our method can reduce over 88\% of training time, reach rendering speed of over 200 FPS, while still achieving competitive accuracy. Experiments prove that our method promotes the practicality of NeRF in the real world and enables many applications.

preprint2022arXiv

Human-Object Interaction Detection via Disentangled Transformer

Human-Object Interaction Detection tackles the problem of joint localization and classification of human object interactions. Existing HOI transformers either adopt a single decoder for triplet prediction, or utilize two parallel decoders to detect individual objects and interactions separately, and compose triplets by a matching process. In contrast, we decouple the triplet prediction into human-object pair detection and interaction classification. Our main motivation is that detecting the human-object instances and classifying interactions accurately needs to learn representations that focus on different regions. To this end, we present Disentangled Transformer, where both encoder and decoder are disentangled to facilitate learning of two sub-tasks. To associate the predictions of disentangled decoders, we first generate a unified representation for HOI triplets with a base decoder, and then utilize it as input feature of each disentangled decoder. Extensive experiments show that our method outperforms prior work on two public HOI benchmarks by a sizeable margin. Code will be available.

preprint2022arXiv

HVTR: Hybrid Volumetric-Textural Rendering for Human Avatars

We propose a novel neural rendering pipeline, Hybrid Volumetric-Textural Rendering (HVTR), which synthesizes virtual human avatars from arbitrary poses efficiently and at high quality. First, we learn to encode articulated human motions on a dense UV manifold of the human body surface. To handle complicated motions (e.g., self-occlusions), we then leverage the encoded information on the UV manifold to construct a 3D volumetric representation based on a dynamic pose-conditioned neural radiance field. While this allows us to represent 3D geometry with changing topology, volumetric rendering is computationally heavy. Hence we employ only a rough volumetric representation using a pose-conditioned downsampled neural radiance field (PD-NeRF), which we can render efficiently at low resolutions. In addition, we learn 2D textural features that are fused with rendered volumetric features in image space. The key advantage of our approach is that we can then convert the fused features into a high-resolution, high-quality avatar by a fast GAN-based textural renderer. We demonstrate that hybrid rendering enables HVTR to handle complicated motions, render high-quality avatars under user-controlled poses/shapes and even loose clothing, and most importantly, be efficient at inference time. Our experimental results also demonstrate state-of-the-art quantitative results.

preprint2022arXiv

Mass Testing and Characterization of 20-inch PMTs for JUNO

Main goal of the JUNO experiment is to determine the neutrino mass ordering using a 20kt liquid-scintillator detector. Its key feature is an excellent energy resolution of at least 3 % at 1 MeV, for which its instruments need to meet a certain quality and thus have to be fully characterized. More than 20,000 20-inch PMTs have been received and assessed by JUNO after a detailed testing program which began in 2017 and elapsed for about four years. Based on this mass characterization and a set of specific requirements, a good quality of all accepted PMTs could be ascertained. This paper presents the performed testing procedure with the designed testing systems as well as the statistical characteristics of all 20-inch PMTs intended to be used in the JUNO experiment, covering more than fifteen performance parameters including the photocathode uniformity. This constitutes the largest sample of 20-inch PMTs ever produced and studied in detail to date, i.e. 15,000 of the newly developed 20-inch MCP-PMTs from Northern Night Vision Technology Co. (NNVT) and 5,000 of dynode PMTs from Hamamatsu Photonics K. K.(HPK).

preprint2022arXiv

MixFormer: Mixing Features across Windows and Dimensions

While local-window self-attention performs notably in vision tasks, it suffers from limited receptive field and weak modeling capability issues. This is mainly because it performs self-attention within non-overlapped windows and shares weights on the channel dimension. We propose MixFormer to find a solution. First, we combine local-window self-attention with depth-wise convolution in a parallel design, modeling cross-window connections to enlarge the receptive fields. Second, we propose bi-directional interactions across branches to provide complementary clues in the channel and spatial dimensions. These two designs are integrated to achieve efficient feature mixing among windows and dimensions. Our MixFormer provides competitive results on image classification with EfficientNet and shows better results than RegNet and Swin Transformer. Performance in downstream tasks outperforms its alternatives by significant margins with less computational costs in 5 dense prediction tasks on MS COCO, ADE20k, and LVIS. Code is available at \url{https://github.com/PaddlePaddle/PaddleClas}.

preprint2021arXiv

Development of water extraction system for liquid scintillatorpurification of JUNO

The Jiangmen Underground Neutrino Observatory (JUNO) uses 20k tons of liquid scintillator (LS)to detect neutrinos. The content of radioactive substances in the liquid scintillator will affect theexperimental results. JUNO will use counter current water extraction to reduce the radioactive metalions inside the LS. In this article, The factors that affect the final water extraction like the partitioncoefficient and the factors that affect it, the optimal mass transfer droplet size, the flow rate ratio,theoretical stage and different working mode (LS as continuous phase or dispersed phase) have beenstudied. We built counter current extraction prototype in the laboratory and a pilot plant in Daya Bay.We not only study the factors above, but also get a lot of engineering experience that worth sharing.

preprint2021arXiv

JUNO Physics and Detector

The Jiangmen Underground Neutrino Observatory (JUNO) is a 20 kton LS detector at 700-m underground. An excellent energy resolution and a large fiducial volume offer exciting opportunities for addressing many important topics in neutrino and astro-particle physics. With 6 years of data, the neutrino mass ordering can be determined at 3-4 sigma and three oscillation parameters can be measured to a precision of 0.6% or better by detecting reactor antineutrinos. With 10 years of data, DSNB could be observed at 3-sigma; a lower limit of the proton lifetime of 8.34e33 years (90% C.L.) can be set by searching for p->nu_bar K^+; detection of solar neutrinos would shed new light on the solar metallicity problem and examine the vacuum-matter transition region. A core-collapse supernova at 10 kpc would lead to ~5000 IBD and ~2000 (300) all-flavor neutrino-proton (electron) scattering events. Geo-neutrinos can be detected with a rate of ~400 events/year. We also summarize the final design of the JUNO detector and the key R&D achievements. All 20-inch PMTs have been tested. The average photon detection efficiency is 28.9% for the 15,000 MCP PMTs and 28.1% for the 5,000 dynode PMTs, higher than the JUNO requirement of 27%. Together with the >20 m attenuation length of LS, we expect a yield of 1345 p.e. per MeV and an effective energy resolution of 3.02%/\sqrt{E (MeV)}$ in simulations. The underwater electronics is designed to have a loss rate <0.5% in 6 years. With degassing membranes and a micro-bubble system, the radon concentration in the 35-kton water pool could be lowered to <10 mBq/m^3. Acrylic panels of radiopurity <0.5 ppt U/Th are produced. The 20-kton LS will be purified onsite. Singles in the fiducial volume can be controlled to ~10 Hz. The JUNO experiment also features a double calorimeter system with 25,600 3-inch PMTs, a LS testing facility OSIRIS, and a near detector TAO.

preprint2021arXiv

Spatiotemporal Characteristics and Factor Analysis of SARS-CoV-2 Infections among Healthcare Workers in Wuhan, China

Studying the spatiotemporal distribution of SARS-CoV-2 infections among healthcare workers (HCWs) can aid in protecting them from exposure. Existing studies related to HCW infections have emphasized infection rates and protective measures. However, the spatiotemporal patterns and related external environmental factors of HCW infections remain unclear. To fill this gap, an open-source dataset of HCW diagnoses was provided, and the spatiotemporal distributions of SARS-CoV-2 infections among HCWs in Wuhan, China were explored. A geographical detector technique was then used to investigate the impacts of hospital level, type, distance from the infection source, and other external indicators of HCW infections. The results showed that the number of daily HCW infections over time in Wuhan followed a log-normal distribution, with and its mean observed on January 23, 2020 and a standard deviation of 10.8 days. The implementation of high-impact measures, such as the lockdown of the city, may have increased the probability of HCW infections in the short term, especially for HCWs in the outer ring of Wuhan. The infection of HCWs Wuhan exhibited clear spatial heterogeneity. The number of HCW infections was higher in the central city and lower in the outer city. Moreover, HCW infections displayed significant spatial autocorrelation and dependence. Factors analyses revealed that hospital level and type had an even greater impact on HCW infections; third-class and general hospitals closer to infection sources were correlated with especially high risks of infection. These findings can aid national epidemic prevention and control departments to understand the spatiotemporal distributions of viral transmission resulting in HCW infections, as well as external influencing factors, which can facilitate the protection of HCWs in China.

preprint2021arXiv

Spatiotemporal Differences of COVID-19 Infection among Healthcare Workers and Patients in China from January to March 2020

Studying the spatiotemporal differences in coronavirus disease (COVID-19) between social groups such as healthcare workers (HCWs) and patients can aid in formulating epidemic containment policies. Most previous studies of the spatiotemporal characteristics of COVID-19 were conducted in a single group and did not explore the differences between groups. To fill this research gap, this study assessed the spatiotemporal characteristics and differences among patients and HCWs infection in Wuhan, Hubei (excluding Wuhan), and China (excluding Hubei). The temporal difference was greater in Wuhan than in the rest of Hubei, and was greater in Hubei (excluding Wuhan) than in the rest of China. The incidence was high in healthcare workers in the early stages of the epidemic. Therefore, it is important to strengthen the protective measures for healthcare workers in the early stage of the epidemic. The spatial difference was less in Wuhan than in the rest of Hubei, and less in Hubei (excluding Wuhan) than in the rest of China. The spatial distribution of healthcare worker infections can be used to infer the spatial distribution of the epidemic in the early stage and to formulate control measures accordingly.

preprint2021arXiv

Two-dimensional charge density wave TaX$_2$ (X=S, Se, Te) from first principles

Transition metal dichalcogenides are rich in their structural phases, e.g. 1T-TaS2 and 1T-TaSe2 form charge density wave (CDW) under low temperature with interesting and exotic properties. Here, we present a systematic study of different structures in two-dimensional TaX2 (X=S, Se, Te) using density functional theory calculations with consideration of van der Waals interaction. All the normal phases present metal characteristics with various ground state and magnetic properties. The lattice reconstruction of CDW drastically affects the electronic and structural characteristics of 1T-TaS2 and 1T-TaSe2, leading to a transition from metal to insulator and an emergence of magnetic moment within periodic atomic clusters called the Star of David. The evaluated Heisenberg couplings indicate the weak ferromagnetic coupling between the clusters in monolayer. Furthermore, in bilayer commensurate CDW cases, we find intriguing phenomenon of the varying magnetic properties with different stacking orders. The magnetic moment in each layer disappears when two layers are coupled, but may sustain in certain stackings of interlayer antiferromagnetic configurations.

preprint2020arXiv

Dynamics for droplet-based electricity generators

The finding of droplet-based electricity generator (DEG), based on the moving boundary of electrical double layer, has triggered great research enthusiasm, and a breakthrough in instantaneous electric power density was achieved recently. However, the dynamic mechanism for such droplet-based electricity generators remains elusive, impeding optimization of the DEG for practical applications. Through comprehensive experiments, we developed a dynamic model of surface charge density that can explain the underlying mechanism for the DEGs. The spreading droplet in touch with the top electrode can be equivalently regarded as an additional part of the top plate of the DEG capacitor, and the change of droplet area causes the change of surface charge density of the plates, driving electrons to migrate between the two plates. The insight of the dynamic mechanism paves a way for optimal design and practical applications of DEGs

preprint2020arXiv

Feasibility and physics potential of detecting $^8$B solar neutrinos at JUNO

The Jiangmen Underground Neutrino Observatory~(JUNO) features a 20~kt multi-purpose underground liquid scintillator sphere as its main detector. Some of JUNO's features make it an excellent experiment for $^8$B solar neutrino measurements, such as its low-energy threshold, its high energy resolution compared to water Cherenkov detectors, and its much large target mass compared to previous liquid scintillator detectors. In this paper we present a comprehensive assessment of JUNO's potential for detecting $^8$B solar neutrinos via the neutrino-electron elastic scattering process. A reduced 2~MeV threshold on the recoil electron energy is found to be achievable assuming the intrinsic radioactive background $^{238}$U and $^{232}$Th in the liquid scintillator can be controlled to 10$^{-17}$~g/g. With ten years of data taking, about 60,000 signal and 30,000 background events are expected. This large sample will enable an examination of the distortion of the recoil electron spectrum that is dominated by the neutrino flavor transformation in the dense solar matter, which will shed new light on the tension between the measured electron spectra and the predictions of the standard three-flavor neutrino oscillation framework. If $Δm^{2}_{21}=4.8\times10^{-5}~(7.5\times10^{-5})$~eV$^{2}$, JUNO can provide evidence of neutrino oscillation in the Earth at the about 3$σ$~(2$σ$) level by measuring the non-zero signal rate variation with respect to the solar zenith angle. Moveover, JUNO can simultaneously measure $Δm^2_{21}$ using $^8$B solar neutrinos to a precision of 20\% or better depending on the central value and to sub-percent precision using reactor antineutrinos. A comparison of these two measurements from the same detector will help elucidate the current tension between the value of $Δm^2_{21}$ reported by solar neutrino experiments and the KamLAND experiment.

preprint2020arXiv

Hierarchical Modes Exploring in Generative Adversarial Networks

In conditional Generative Adversarial Networks (cGANs), when two different initial noises are concatenated with the same conditional information, the distance between their outputs is relatively smaller, which makes minor modes likely to collapse into large modes. To prevent this happen, we proposed a hierarchical mode exploring method to alleviate mode collapse in cGANs by introducing a diversity measurement into the objective function as the regularization term. We also introduced the Expected Ratios of Expansion (ERE) into the regularization term, by minimizing the sum of differences between the real change of distance and ERE, we can control the diversity of generated images w.r.t specific-level features. We validated the proposed algorithm on four conditional image synthesis tasks including categorical generation, paired and un-paired image translation and text-to-image generation. Both qualitative and quantitative results show that the proposed method is effective in alleviating the mode collapse problem in cGANs, and can control the diversity of output images w.r.t specific-level features.

preprint2020arXiv

Multi-object Tracking via End-to-end Tracklet Searching and Ranking

Recent works in multiple object tracking use sequence model to calculate the similarity score between the detections and the previous tracklets. However, the forced exposure to ground-truth in the training stage leads to the training-inference discrepancy problem, i.e., exposure bias, where association error could accumulate in the inference and make the trajectories drift. In this paper, we propose a novel method for optimizing tracklet consistency, which directly takes the prediction errors into account by introducing an online, end-to-end tracklet search training process. Notably, our methods directly optimize the whole tracklet score instead of pairwise affinity. With sequence model as appearance encoders of tracklet, our tracker achieves remarkable performance gain from conventional tracklet association baseline. Our methods have also achieved state-of-the-art in MOT15~17 challenge benchmarks using public detection and online settings.

preprint2020arXiv

Spatiotemporal Patterns of COVID-19 Impact on Human Activities and Environment in China Using Nighttime Light and Air Quality Data

In order to analyze the impact of COVID-19 on people's lives, activities and the natural environment, this paper investigates the spatial and temporal characteristics of Night Time Light (NTL) radiance and Air Quality Index (AQI) before and during the pandemic in mainland China. Our results show that the monthly average NTL brightness is much lower during the quarantine period than before. This study categorizes NTL into three classes: residential area, transportation and public facilities and commercial centers, with NTL radiance ranges of 5-20, 20-40 and greater than 40 nW/(cm*cm*sr), respectively. We found that the Number Of Pixels (NOP) with NTL detection increased in the residential area and decreased in the commercial centers for most of the provinces after the shutdown, while transportation and public facilities generally stayed the same. More specifically, we examined these factors in Wuhan, where the first confirmed cases were reported, and where the earliest quarantine measures were taken. Observations and analysis of pixels associated with commercial centers were observed to have lower NTL radiance values, indicating a dimming behavior, while residential area pixels recorded increased levels of brightness, after the beginning of the lockdown. The study also discovered a significant decreasing trend in the daily average AQI for the whole country, with cleaner air in most provinces during February and March, compared to January 2020. In conclusion, the outbreak and spread of COVID-19 has had a crucial impact on people's daily lives and activity ranges through the increased implementation of lockdown and quarantine policies. On the other hand, the air quality of China has improved with the reduction of non-essential industries and motor vehicle usage.

preprint2020arXiv

Taking the pulse of COVID-19: A spatiotemporal perspective

The sudden outbreak of the Coronavirus disease (COVID-19) swept across the world in early 2020, triggering the lockdowns of several billion people across many countries, including China, Spain, India, the U.K., Italy, France, Germany, and most states of the U.S. The transmission of the virus accelerated rapidly with the most confirmed cases in the U.S., and New York City became an epicenter of the pandemic by the end of March. In response to this national and global emergency, the NSF Spatiotemporal Innovation Center brought together a taskforce of international researchers and assembled implemented strategies to rapidly respond to this crisis, for supporting research, saving lives, and protecting the health of global citizens. This perspective paper presents our collective view on the global health emergency and our effort in collecting, analyzing, and sharing relevant data on global policy and government responses, geospatial indicators of the outbreak and evolving forecasts; in developing research capabilities and mitigation measures with global scientists, promoting collaborative research on outbreak dynamics, and reflecting on the dynamic responses from human societies.

preprint2020arXiv

TAO Conceptual Design Report: A Precision Measurement of the Reactor Antineutrino Spectrum with Sub-percent Energy Resolution

The Taishan Antineutrino Observatory (TAO, also known as JUNO-TAO) is a satellite experiment of the Jiangmen Underground Neutrino Observatory (JUNO). A ton-level liquid scintillator detector will be placed at about 30 m from a core of the Taishan Nuclear Power Plant. The reactor antineutrino spectrum will be measured with sub-percent energy resolution, to provide a reference spectrum for future reactor neutrino experiments, and to provide a benchmark measurement to test nuclear databases. A spherical acrylic vessel containing 2.8 ton gadolinium-doped liquid scintillator will be viewed by 10 m^2 Silicon Photomultipliers (SiPMs) of >50% photon detection efficiency with almost full coverage. The photoelectron yield is about 4500 per MeV, an order higher than any existing large-scale liquid scintillator detectors. The detector operates at -50 degree C to lower the dark noise of SiPMs to an acceptable level. The detector will measure about 2000 reactor antineutrinos per day, and is designed to be well shielded from cosmogenic backgrounds and ambient radioactivities to have about 10% background-to-signal ratio. The experiment is expected to start operation in 2022.

preprint2015arXiv

A Hebbian/Anti-Hebbian Network for Online Sparse Dictionary Learning Derived from Symmetric Matrix Factorization

Olshausen and Field (OF) proposed that neural computations in the primary visual cortex (V1) can be partially modeled by sparse dictionary learning. By minimizing the regularized representation error they derived an online algorithm, which learns Gabor-filter receptive fields from a natural image ensemble in agreement with physiological experiments. Whereas the OF algorithm can be mapped onto the dynamics and synaptic plasticity in a single-layer neural network, the derived learning rule is nonlocal - the synaptic weight update depends on the activity of neurons other than just pre- and postsynaptic ones - and hence biologically implausible. Here, to overcome this problem, we derive sparse dictionary learning from a novel cost-function - a regularized error of the symmetric factorization of the input's similarity matrix. Our algorithm maps onto a neural network of the same architecture as OF but using only biologically plausible local learning rules. When trained on natural images our network learns Gabor-filter receptive fields and reproduces the correlation among synaptic weights hard-wired in the OF network. Therefore, online symmetric matrix factorization may serve as an algorithmic theory of neural computation.

preprint2015arXiv

A Hebbian/Anti-Hebbian Neural Network for Linear Subspace Learning: A Derivation from Multidimensional Scaling of Streaming Data

Neural network models of early sensory processing typically reduce the dimensionality of streaming input data. Such networks learn the principal subspace, in the sense of principal component analysis (PCA), by adjusting synaptic weights according to activity-dependent learning rules. When derived from a principled cost function these rules are nonlocal and hence biologically implausible. At the same time, biologically plausible local rules have been postulated rather than derived from a principled cost function. Here, to bridge this gap, we derive a biologically plausible network for subspace learning on streaming data by minimizing a principled cost function. In a departure from previous work, where cost was quantified by the representation, or reconstruction, error, we adopt a multidimensional scaling (MDS) cost function for streaming data. The resulting algorithm relies only on biologically plausible Hebbian and anti-Hebbian local learning rules. In a stochastic setting, synaptic weights converge to a stationary state which projects the input data onto the principal subspace. If the data are generated by a nonstationary distribution, the network can track the principal subspace. Thus, our result makes a step towards an algorithmic theory of neural computation.

preprint2015arXiv

Analysis and perturbation of degree correlation in complex networks

Degree correlation is an important topological property common to many real-world networks. In this paper, the statistical measures for characterizing the degree correlation in networks are investigated analytically. We give an exact proof of the consistency for the statistical measures, reveal the general linear relation in the degree correlation, which provide a simple and interesting perspective on the analysis of the degree correlation in complex networks. By using the general linear analysis, we investigate the perturbation of the degree correlation in complex networks caused by the addition of few nodes and the rich club. The results show that the assortativity of homogeneous networks such as the ER graphs is easily to be affected strongly by the simple structural changes, while it has only slight variation for heterogeneous networks with broad degree distribution such as the scale-free networks. Clearly, the homogeneous networks are more sensitive for the perturbation than the heterogeneous networks.

preprint2015arXiv

Neutrino Physics with JUNO

The Jiangmen Underground Neutrino Observatory (JUNO), a 20 kton multi-purpose underground liquid scintillator detector, was proposed with the determination of the neutrino mass hierarchy as a primary physics goal. It is also capable of observing neutrinos from terrestrial and extra-terrestrial sources, including supernova burst neutrinos, diffuse supernova neutrino background, geoneutrinos, atmospheric neutrinos, solar neutrinos, as well as exotic searches such as nucleon decays, dark matter, sterile neutrinos, etc. We present the physics motivations and the anticipated performance of the JUNO detector for various proposed measurements. By detecting reactor antineutrinos from two power plants at 53-km distance, JUNO will determine the neutrino mass hierarchy at a 3-4 sigma significance with six years of running. The measurement of antineutrino spectrum will also lead to the precise determination of three out of the six oscillation parameters to an accuracy of better than 1\%. Neutrino burst from a typical core-collapse supernova at 10 kpc would lead to ~5000 inverse-beta-decay events and ~2000 all-flavor neutrino-proton elastic scattering events in JUNO. Detection of DSNB would provide valuable information on the cosmic star-formation rate and the average core-collapsed neutrino energy spectrum. Geo-neutrinos can be detected in JUNO with a rate of ~400 events per year, significantly improving the statistics of existing geoneutrino samples. The JUNO detector is sensitive to several exotic searches, e.g. proton decay via the $p\to K^++\barν$ decay channel. The JUNO detector will provide a unique facility to address many outstanding crucial questions in particle and astrophysics. It holds the great potential for further advancing our quest to understanding the fundamental properties of neutrinos, one of the building blocks of our Universe.

preprint2015arXiv

p/${π^+}$ response of single layer THGEM detector in Ar/3%iC$_4$H$_{10}$

In this work, we study the response of single layer Thick GEM (THGEM) detector to p/${π^+}$ at E3 line of Beijing Test Beam Facility. In our experiment, the drift gap of THGEM Detector is 4mm, and the working gas is Ar/3% iso. Result shows at the momentum 500MeV/c to 1000MeV/c, detection efficiency for p is from 93% to 99% in a relatively lower gain($\sim$2000), while the detection efficiency for ${π^+}$ is slightly lower than that for p, which is from 82% to 88%. Meanwhile, simple Geant4 simulations have been done, and results of beam test are almost consistent with it. We preliminarily study the feasibility of THGEM detectors as sampling elements for Digital Hadronic Calorimeter(DHCAL), which may provide related reference for THGEM possibly applied in Circular Electron Positron Collider(CEPC) HCAL.

preprint2014arXiv

A Neuron as a Signal Processing Device

A neuron is a basic physiological and computational unit of the brain. While much is known about the physiological properties of a neuron, its computational role is poorly understood. Here we propose to view a neuron as a signal processing device that represents the incoming streaming data matrix as a sparse vector of synaptic weights scaled by an outgoing sparse activity vector. Formally, a neuron minimizes a cost function comprising a cumulative squared representation error and regularization terms. We derive an online algorithm that minimizes such cost function by alternating between the minimization with respect to activity and with respect to synaptic weights. The steps of this algorithm reproduce well-known physiological properties of a neuron, such as weighted summation and leaky integration of synaptic inputs, as well as an Oja-like, but parameter-free, synaptic learning rule. Our theoretical framework makes several predictions, some of which can be verified by the existing data, others require further experiments. Such framework should allow modeling the function of neuronal circuits without necessarily measuring all the microscopic biophysical parameters, as well as facilitate the design of neuromorphic electronics.

preprint2014arXiv

Fast Genome-Wide QTL Analysis Using Mendel

Pedigree GWAS (Option 29) in the current version of the Mendel software is an optimized subroutine for performing large scale genome-wide QTL analysis. This analysis (a) works for random sample data, pedigree data, or a mix of both, (b) is highly efficient in both run time and memory requirement, (c) accommodates both univariate and multivariate traits, (d) works for autosomal and x-linked loci, (e) correctly deals with missing data in traits, covariates, and genotypes, (f) allows for covariate adjustment and constraints among parameters, (g) uses either theoretical or SNP-based empirical kinship matrix for additive polygenic effects, (h) allows extra variance components such as dominant polygenic effects and household effects, (i) detects and reports outlier individuals and pedigrees, and (j) allows for robust estimation via the $t$-distribution. The current paper assesses these capabilities on the genetics analysis workshop 19 (GAW19) sequencing data. We analyzed simulated and real phenotypes for both family and random sample data sets. For instance, when jointly testing the 8 longitudinally measured systolic blood pressure (SBP) and diastolic blood pressure (DBP) traits, it takes Mendel 78 minutes on a standard laptop computer to read, quality check, and analyze a data set with 849 individuals and 8.3 million SNPs. Genome-wide eQTL analysis of 20,643 expression traits on 641 individuals with 8.3 million SNPs takes 30 hours using 20 parallel runs on a cluster. Mendel is freely available at \url{http://www.genetics.ucla.edu/software}.

preprint2014arXiv

High-T_c superconductivity in ultrathin Bi_2Sr_2CaCu_2O_8+x down to halfunit-cell thickness by protection with graphene

High-T_c superconductors confined to two dimension exhibit novel physical phenomena, such as superconductor-insulator transition. In the Bi_2Sr_2CaCu_2O_8+x (Bi2212) model system, despite extensive studies, the intrinsic superconducting properties at the thinness limit have been difficult to determine. Here we report a method to fabricate high quality single-crystal Bi2212 films down to half-unit-cell thickness in the form of graphene/Bi2212 van der Waals heterostructure, in which sharp superconducting transitions are observed. The heterostructure also exhibits a nonlinear current-voltage characteristic due to the Dirac nature of the graphene band structure. More interestingly, although the critical temperature remains essentially the same with reduced thickness of Bi2212, the slope of the normal state T-linear resistivity varies by a factor of 4-5, and the sheet resistance increases by three orders of magnitude, indicating a surprising decoupling of the normal state resistance and superconductivity. The developed technique is versatile, applicable to investigate other two-dimensional (2D) superconducting materials.

preprint2014arXiv

Phase Diagram and Weak-link Behavior in Nd-doped CaFe_2As_2

The transport properties, phase diagram, and dopant distribution are investigated in systematically Nd doped CaFe_2As_2 single crystals. Coexistence of two superconducting (SC) phases with different critical transition temperature (T_c) is observed. The low-T_c phase emerges as x >= 0.031, and the T_c value increases to its maximum value of about 20 K at x = 0.083, the maximum doping level in our study. As x >= 0.060, the high-T_c phase with a T_c value of about 40 K is observed. The structure transition (STr) from tetragonal to orthorhombic phase vanishes suddenly around x = 0.060, where a new STr from tetragonal to collapsed tetragonal phase begins to turn up. Compared to the low-T_c phase, the end point of SC transition of the high-T_c phase is more sensitive to the magnetic field, showing a characteristic of Josephson weak-link behavior. Possible scenarios about this system are discussed based on our observations. We also find that the non-uniform SC properties cannot be attributed to the heterogeneous Nd distribution on the micro scale, as revealed by the detailed energy dispersive X-ray spectroscopy (EDS) measurements.

preprint2014arXiv

Simulation and performance study of the ceramic THGEM

The THGEMs based on ceramic substrate were developed successfully for neutron and single photon detection. The influences on thermal neutron scattering and the internal radioactivity of both ceramic and FR-4 substrates were studied and compared. The ceramic THGEMs are homemade of 200 um hole diameter, 600 um pitch, 200 um thickness, 80 um rim, and 50 mm*50 mm sensitive area. The FR-4 THGEMs with the same geometry were used for the reference. The gas gain, energy resolution and gain stability were measured in different gas mixtures by using the 5.9 keV X-rays. The maximum gain of single layer ceramic THGEM reaches 6*104 and 1.5*104 at Ne+CH4 = 95:5 and Ar+i-C4H10 = 97:3, respectively. The energy resolution is better than 24%. The good gain stability was obtained during more than 100 hour continuous test at Ar+CO2 = 80:20. By using the 239Pu source, the alpha deposited energy spectrum and gain curve of ceramic THGEM were measured.

preprint2014arXiv

Simulation of background reduction and Compton depression in low-background HPGe spectrometer at a surface laboratory

High-purity germanium detectors are well suited to analysis the radioactivity of samples. In order to reduce the environmental background, low-activity lead and oxygen free copper are installed outside of the probe to shield gammas, outmost is a plastic scintillator to veto the cosmic rays, and an anti-Compton detector can improve the Peak-to-Compton ratio. Using the GEANT4 tools and taking into account a detailed description of the detector, we optimize the sizes of the detectors to reach the design indexes. A group of experimental data from a HPGe spectrometer in using were used to compare with the simulation. As to new HPGe Detector simulation, considering the different thickness of BGO crystals and anti-coincidence efficiency, the simulation results show that the optimal thickness is 5.5cm, and the Peak-to-Compton ratio of 40K is raised to 1000 when the anti-coincidence efficiency is 0.85. As the background simulation, 15 cm oxygen-free copper plus 10 cm lead can reduce the environmental gamma rays to 0.0024 cps/100 cm3 Ge (50keV~2.8MeV), which is about 10-5 of environmental background.

preprint2014arXiv

Synthesis, Structural, and Transport Properties of Cr-doped BaTi_2As_2O

The interplay between unconventional superconductivity and the ordering of charge/spin density wave is one of the most vital issues in both condensed matter physics and material science. The Ti-based compound BaTi_2As_2O, which can be seen as the parent phase of superconducting BaTi_2Sb_2O, has a layered structure with a space group P4/mmm, similar to that of cuprate and iron-based superconductors. This material exhibits a charge density wave (CDW) ordering transition revealed by an anomaly at around 200 K in transport measurements. Here, we report the synthesis and systematical study of the physical properties in Cr-doped BaTi_{2-x}Cr_xAs_2O (x = 0 - 0.154), and demonstrate that the transition temperature of the CDW ordering is suppressed gradually by the doped Cr element. The magnetization measurements confirm the evolution of the CDW ordering transition. These observed behaviors are similar to that observed in iron-based superconductors, but no superconductivity emerges down to 2 K. In addition, the first-principles calculations are also carried out for well-understanding the nature of experimental observations.

preprint2014arXiv

Task-group Relatedness and Generalization Bounds for Regularized Multi-task Learning

In this paper, we study the generalization performance of regularized multi-task learning (RMTL) in a vector-valued framework, where MTL is considered as a learning process for vector-valued functions. We are mainly concerned with two theoretical questions: 1) under what conditions does RMTL perform better with a smaller task sample size than STL? 2) under what conditions is RMTL generalizable and can guarantee the consistency of each task during simultaneous learning? In particular, we investigate two types of task-group relatedness: the observed discrepancy-dependence measure (ODDM) and the empirical discrepancy-dependence measure (EDDM), both of which detect the dependence between two groups of multiple related tasks (MRTs). We then introduce the Cartesian product-based uniform entropy number (CPUEN) to measure the complexities of vector-valued function classes. By applying the specific deviation and the symmetrization inequalities to the vector-valued framework, we obtain the generalization bound for RMTL, which is the upper bound of the joint probability of the event that there is at least one task with a large empirical discrepancy between the expected and empirical risks. Finally, we present a sufficient condition to guarantee the consistency of each task in the simultaneous learning process, and we discuss how task relatedness affects the generalization performance of RMTL. Our theoretical findings answer the aforementioned two questions.

preprint2013arXiv

Superconductivity induced by U-doping in the SmFeAsO system

Through partial substitution of Sm by U in SmFeAsO, a different member of the family of iron-based superconductors was successfully synthesized. X-ray diffraction measurements show that the lattice constants along the a and c axes are both squeezed through U doping, indicating a successful substitution of U at the Sm site. The parent compound shows a strong resistivity anomaly near 150 K, associated with spin-density-wave instability.U doping suppresses this instability and leads to a transition to the superconducting state at temperatures up to 49 K. Magnetic measurements confirm the bulk superconductivity in this system. For the sample with a doping level of x = 0.2, the external magnetic field suppresses the onset temperature very slowly, indicating a rather high upper critical field. In addition, the Hall effect measurements show that U clearly dopes electrons into the material.

preprint2012arXiv

A network of spiking neurons for computing sparse representations in an energy efficient way

Computing sparse redundant representations is an important problem both in applied mathematics and neuroscience. In many applications, this problem must be solved in an energy efficient way. Here, we propose a hybrid distributed algorithm (HDA), which solves this problem on a network of simple nodes communicating via low-bandwidth channels. HDA nodes perform both gradient-descent-like steps on analog internal variables and coordinate-descent-like steps via quantized external variables communicated to each other. Interestingly, such operation is equivalent to a network of integrate-and-fire neurons, suggesting that HDA may serve as a model of neural computation. We show that the numerical performance of HDA is on par with existing algorithms. In the asymptotic regime the representation error of HDA decays with time, t, as 1/t. HDA is stable against time-varying noise, specifically, the representation error decays as 1/sqrt(t) for Gaussian white noise.

preprint2012arXiv

Online computation of sparse representations of time varying stimuli using a biologically motivated neural network

Natural stimuli are highly redundant, possessing significant spatial and temporal correlations. While sparse coding has been proposed as an efficient strategy employed by neural systems to encode sensory stimuli, the underlying mechanisms are still not well understood. Most previous approaches model the neural dynamics by the sparse representation dictionary itself and compute the representation coefficients offline. In reality, faced with the challenge of constantly changing stimuli, neurons must compute the sparse representations dynamically in an online fashion. Here, we describe a leaky linearized Bregman iteration (LLBI) algorithm which computes the time varying sparse representations using a biologically motivated network of leaky rectifying neurons. Compared to previous attempt of dynamic sparse coding, LLBI exploits the temporal correlation of stimuli and demonstrate better performance both in representation error and the smoothness of temporal evolution of sparse coefficients.

preprint2012arXiv

Reconstruction of Sparse Circuits Using Multi-neuronal Excitation (RESCUME)

One of the central problems in neuroscience is reconstructing synaptic connectivity in neural circuits. Synapses onto a neuron can be probed by sequentially stimulating potentially pre-synaptic neurons while monitoring the membrane voltage of the post-synaptic neuron. Reconstructing a large neural circuit using such a "brute force" approach is rather time-consuming and inefficient because the connectivity in neural circuits is sparse. Instead, we propose to measure a post-synaptic neuron's voltage while stimulating sequentially random subsets of multiple potentially pre-synaptic neurons. To reconstruct these synaptic connections from the recorded voltage we apply a decoding algorithm recently developed for compressive sensing. Compared to the brute force approach, our method promises significant time savings that grow with the size of the circuit. We use computer simulations to find optimal stimulation parameters and explore the feasibility of our reconstruction method under realistic experimental conditions including noise and non-linear synaptic integration. Multineuronal stimulation allows reconstructing synaptic connectivity just from the spiking activity of post-synaptic neurons, even when sub-threshold voltage is unavailable. By using calcium indicators, voltage-sensitive dyes, or multi-electrode arrays one could monitor activity of multiple postsynaptic neurons simultaneously, thus mapping their synaptic inputs in parallel, potentially reconstructing a complete neural circuit.

preprint2012arXiv

Sparse LMS via Online Linearized Bregman Iteration

We propose a version of least-mean-square (LMS) algorithm for sparse system identification. Our algorithm called online linearized Bregman iteration (OLBI) is derived from minimizing the cumulative prediction error squared along with an l1-l2 norm regularizer. By systematically treating the non-differentiable regularizer we arrive at a simple two-step iteration. We demonstrate that OLBI is bias free and compare its operation with existing sparse LMS algorithms by rederiving them in the online convex optimization framework. We perform convergence analysis of OLBI for white input signals and derive theoretical expressions for both the steady state and instantaneous mean square deviations (MSD). We demonstrate numerically that OLBI improves the performance of LMS type algorithms for signals generated from sparse tap weights.

preprint2012arXiv

Super-resolution using Sparse Representations over Learned Dictionaries: Reconstruction of Brain Structure using Electron Microscopy

A central problem in neuroscience is reconstructing neuronal circuits on the synapse level. Due to a wide range of scales in brain architecture such reconstruction requires imaging that is both high-resolution and high-throughput. Existing electron microscopy (EM) techniques possess required resolution in the lateral plane and either high-throughput or high depth resolution but not both. Here, we exploit recent advances in unsupervised learning and signal processing to obtain high depth-resolution EM images computationally without sacrificing throughput. First, we show that the brain tissue can be represented as a sparse linear combination of localized basis functions that are learned using high-resolution datasets. We then develop compressive sensing-inspired techniques that can reconstruct the brain tissue from very few (typically 5) tomographic views of each section. This enables tracing of neuronal processes and, hence, high throughput reconstruction of neural circuits on the level of individual synapses.

preprint2011arXiv

Experimental study of THGEM detector with mini-rim

The gas gain and energy resolution of single and double THGEM detectors (5{\times}5cm2 effective area) with mini-rims (rim is less than 10μm) were studied. The maximum gain can reach 5{\times}103 and 2{\times}105 for single and double THGEM respectively, while the energy resolution of 5.9 keV X-ray varied from 18% to 28% for both single and double THGEM detectors of different hole sizes and thicknesses.All the experiments were investigated in mixture of noble gases(argon,neon) and small content of other gases(iso-butane,methane) at atmospheric pressure.

preprint2011arXiv

Neutron-gamma discrimination of CsI(Na) crystals for dark matter searches

The luminescent properties of CsI(Na) crystals are studied in this report. By using a TDS3054C oscilloscope with a sampling frequency of 5 GS/s, we find out that nuclear recoil signals are dominated by very fast light pulse with a decay time of ~20 ns, while γ-ray signals have a decay time of ~600 ns. The wavelength of nuclear recoil and γ-ray signals are also different. The study of n/γ separation shows that the rejection factor can reach an order of 10-7 with signal efficiency more than 80% at an equivalent electron recoil energy of 20 keV or more. Such a property makes CsI(Na) an ideal candidate for dark matter searches.

preprint2011arXiv

The fast light of CsI(Na) crystals

The responds of different common alkali halide crystals to alpha-rays and gamma-rays are tested in our research. It is found that only CsI(Na) crystals have significantly different waveforms between alpha and gamma scintillations, while others have not this phenomena. It is suggested that the fast light of CsI(Na) crystals arises from the recombination of free electrons with self-trapped holes of the host crystal CsI. Self-absorption limits the emission of fast light of CsI(Tl) and NaI(Tl) crystals.

preprint2007arXiv

Electrostatic theory of viral self-assembly: a toy model

Viruses self-assemble from identical capsid proteins and their genome consisting, for example, of a long single stranded (ss) RNA. For a big class of T = 3 viruses capsid proteins have long positive N-terminal tails. We explore the role played by the Coulomb interaction between the brush of positive N-terminal tails rooted at the inner surface of the capsid and the negative ss RNA molecule. We show that viruses are most stable when the total contour length of ss RNA is close to the total length of the tails. For such a structure the absolute value of the total RNA charge is approximately twice larger than the charge of the capsid. This conclusion agrees with structural data.

preprint2007arXiv

How a protein searches for its specific site on DNA: the role of intersegment transfer

Proteins are known to locate their specific targets on DNA up to two orders of magnitude faster than predicted by the Smoluchowski three-dimensional diffusion rate. One of the mechanisms proposed to resolve this discrepancy is termed "intersegment transfer". Many proteins have two DNA binding sites and can transfer from one DNA segment to another without dissociation to water. We calculate the target search rate for such proteins in a dense globular DNA, taking into account intersegment transfer working in conjunction with DNA motion and protein sliding along DNA. We show that intersegment transfer plays a very important role in cases where the protein spends most of its time adsorbed on DNA.

preprint2005arXiv

How do proteins search for their specific sites on coiled or globular DNA

It is known since the early days of molecular biology that proteins locate their specific targets on DNA up to two orders of magnitude faster than the Smoluchowski 3D diffusion rate. It was the idea due to Delbruck that they are non-specifically adsorbed on DNA, and sliding along DNA provides for the faster 1D search. Surprisingly, the role of DNA conformation was never considered in this context. In this article, we explicitly address the relative role of 3D diffusion and 1D sliding along coiled or globular DNA and the possibility of correlated re-adsorbtion of desorbed proteins. We have identified a wealth of new different scaling regimes. We also found the maximal possible acceleration of the reaction due to sliding, we found that the maximum on the rate-versus-ionic strength curve is asymmetric, and that sliding can lead not only to acceleration, but in some regimes to dramatic deceleration of the reaction.