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Published work

18 published item(s)

preprint2026arXiv

Counterfactual Trace Auditing of LLM Agent Skills

Large Language Model agents are increasingly augmented with agent skills. Current evaluation methods for skills remain limited. Most deployed benchmarks report only pass rate before and after a skill is attached, treating the skill as a black box change to agent behavior. We introduce Counterfactual Trace Auditing (CTA), a framework for measuring how a skill changes agent behavior. CTA pairs each with skill agent trace with a without skill counterpart on the same task, segments both traces into goal directed phases, aligns the phases, and emits structured Skill Influence Pattern (SIP) annotations. These annotations describe the behavioral effect of a skill rather than only its task outcome. We instantiate CTA on SWE-Skills-Bench with Claude across 49 software engineering tasks. The resulting audit reveals a clear evaluation gap. Pass rate changes by only +0.3 percentage points on average, suggesting little aggregate effect. Yet CTA identifies 522 SIP instances across the same paired traces, showing that the skills substantially reshape agent behavior even when pass rate is nearly unchanged. The audit also separates several recurring effects that pass rate cannot detect, including literal template copying, off task artifact creation, excess planning, and task recovery. Three findings emerge. First, high baseline tasks contain most of the observed skill effects, although their pass rate is already saturated and therefore cannot reflect those effects. Second, tasks with moderate baseline performance show the most recoverable gain, but often at substantially higher token cost. Third, the dominant SIP type can be identified by baseline bucket: surface anchoring is most common on ceiling tasks and edge-case prompting is most common on mid-range and floor tasks. These regularities turn informal failure mode observations into reproducible behavioral measurements.

preprint2026arXiv

FASH-iCNN: Making Editorial Fashion Identity Inspectable Through Multimodal CNN Probing

Fashion AI systems routinely encode the aesthetic logic of specific houses, editors, and historical moments without disclosing it. We present FASH-iCNN, a multimodal system trained on 87,547 Vogue runway images across 15 fashion houses spanning 1991-2024 that makes this cultural logic inspectable. Given a photograph of a garment, the system recovers which house produced it, which era it belongs to, and which color tradition it reflects. A clothing-only model identifies the fashion house at 78.2% top-1 across 14 houses, the decade at 88.6% top-1, and the specific year at 58.3% top-1 across 34 years with a mean error of just 2.2 years. Probing which visual channels carry this signal reveals a sharp dissociation: removing color costs only 10.6pp of house identity accuracy, while removing texture costs 37.6pp, establishing texture and luminance as the primary carriers of editorial identity. FASH-iCNN treats editorial culture as the signal rather than background noise, identifying which houses, eras, and color traditions shaped each output so that users can see not just what the system predicts but which houses, editors, and historical moments are encoded in that prediction.

preprint2026arXiv

Five Years of SciCap: What We Learned and Future Directions for Scientific Figure Captioning

Between 2021 and 2025, the SciCap project grew from a small seed-funded idea at The Pennsylvania State University (Penn State) into one of the central efforts shaping the scientific figure-captioning landscape. Supported by a Penn State seed grant, Adobe, and the Alfred P. Sloan Foundation, what began as our attempt to test whether domain-specific training, which was successful in text models like SciBERT, could also work for figure captions expanded into a multi-institution collaboration. Over these five years, we curated, released, and continually updated a large collection of figure-caption pairs from arXiv papers, conducted extensive automatic and human evaluations on both generated and author-written captions, navigated the rapid rise of large language models (LLMs), launched annual challenges, and built interactive systems that help scientists write better captions. In this piece, we look back at the first five years of SciCap and summarize the key technical and methodological lessons we learned. We then outline five major unsolved challenges and propose directions for the next phase of research in scientific figure captioning.

preprint2026arXiv

Knowledge Homophily in Large Language Models

Large Language Models (LLMs) have been increasingly studied as neural knowledge bases for supporting knowledge-intensive applications such as question answering and fact checking. However, the structural organization of their knowledge remains unexplored. Inspired by cognitive neuroscience findings, such as semantic clustering and priming, where knowing one fact increases the likelihood of recalling related facts, we investigate an analogous knowledge homophily pattern in LLMs. To this end, we map LLM knowledge into a graph representation through knowledge checking at both the triplet and entity levels. After that, we analyze the knowledgeability relationship between an entity and its neighbors, discovering that LLMs tend to possess a similar level of knowledge about entities positioned closer in the graph. Motivated by this homophily principle, we propose a Graph Neural Network (GNN) regression model to estimate entity-level knowledgeability scores for triplets by leveraging their neighborhood scores. The predicted knowledgeability enables us to prioritize checking less well-known triplets, thereby maximizing knowledge coverage under the same labeling budget. This not only improves the efficiency of active labeling for fine-tuning to inject knowledge into LLMs but also enhances multi-hop path retrieval in reasoning-intensive question answering.

preprint2026arXiv

Orthrus: Memory-Efficient Parallel Token Generation via Dual-View Diffusion

We introduce Orthrus, a simple and efficient dual-architecture framework that unifies the exact generation fidelity of autoregressive Large Language Models (LLMs) with the high-speed parallel token generation of diffusion models. The sequential nature of standard autoregressive decoding represents a fundamental bottleneck for high-throughput inference. While diffusion language models attempt to break this barrier via parallel generation, they suffer from significant performance degradation, high training costs, and a lack of rigorous convergence guarantees. Orthrus resolves this dichotomy natively. Designed to seamlessly integrate into existing Transformers, the framework augments a frozen LLM with a lightweight, trainable module to create a parallel diffusion view alongside the standard autoregressive view. In this unified system, both views attend to the exact same high-fidelity Key-Value (KV) cache; the autoregressive head executes context pre-filling to construct accurate KV representations, while the diffusion head executes parallel generation. By employing an exact consensus mechanism between the two views, Orthrus guarantees lossless inference, delivering up to a 7.8x speedup with only an O(1) memory cache overhead and minimal parameter additions.

preprint2026arXiv

Skill-R1: Agent Skill Evolution via Reinforcement Learning

Agentic large language models often rely on skills, reusable natural language procedures that guide planning, action, and tool use. In practice, skills are typically improved through prompt engineering or by aligning the task LLM itself, which is costly, model-specific, and often infeasible for closed-source models. Skill optimization is not a one-step problem but a recurrent process with two coupled levels of credit assignment: a useful skill must improve rollout quality under current conditioning, while a useful revision must turn observed outcomes into a better skill for the next round. We propose Skill-R1, a reinforcement learning framework for instance-level recurrent skill optimization from verifiable rewards. Rather than updating the task LLM, Skill-R1 trains a lightweight skill generator that conditions on the task context, prior rollouts, and their verified outcomes to produce skills that steer a frozen task LLM. This preserves black-box compatibility with both open- and closed-source models while making adaptation substantially cheaper than model-level updates. Skill-R1 proceeds over multiple generations: at each step, the current skill induces rollouts whose verified outcomes are fed back to produce the next revision. To optimize this recurrent process, we introduce a bi-level group-relative policy optimization objective combining intra-generation and inter-generation advantages. The intra-generation term compares rollouts under shared skill conditioning, while the inter-generation term rewards revisions that improve behavior across successive generations. Together, these provide a principled objective for directional skill evolution rather than one-shot self-refinement. Empirically, Skill-R1 achieves consistent gains over no-skill baselines and standard GRPO across benchmarks with verifiable rewards, with particularly strong improvements on complex, multi-step tasks.

preprint2026arXiv

When Simulation Lies: A Sim-to-Real Benchmark and Domain-Randomized RL Recipe for Tool-Use Agents

Tool-use language agents are evaluated on benchmarks that assume clean inputs, unambiguous tool registries, and reliable APIs. Real deployments violate all these assumptions: user typos propagate into hallucinated tool names, a misconfigured request timeout can stall an agent indefinitely, and duplicate tool names across servers can freeze an SDK. We study these failures as a sim-to-real gap in the tool-use partially observable Markov decision process (POMDP), where deployment noise enters through the observation, action space, reward-relevant metadata, or transition dynamics. We introduce RobustBench-TC, a benchmark with 22 perturbation types organized by these four POMDP components, each grounded in a verified GitHub issue or documented tool-calling failure. Across 21 models from 1.5B to 32B parameters (including the closed-source o4-mini), the robustness profile is sharply uneven: observation perturbations reduce accuracy by less than 5%, while reward-relevant and transition perturbations reduce accuracy by roughly 40% and 30%, respectively; scale alone does not close these gaps. We then propose ToolRL-DR, a domain-randomization reinforcement learning (RL) recipe that trains a tool-use agent on perturbation-augmented trajectories spanning the three statically encodable POMDP components. On a 3B backbone, ToolRL-DR-Full retains roughly three-quarters of clean accuracy and reaches an aggregate perturbed accuracy comparable to open-source 14B function-calling baselines while substantially narrowing the gap to o4-mini. It closes approximately 27% of the Transition gap despite never seeing transition perturbations in training, suggesting that RL on adversarial static tool-use inputs induces a more persistent retry policy that transfers to unseen runtime failures. The dataset, code and benchmark leaderboard are publicly available.

preprint2022arXiv

A Hypergraph Neural Network Framework for Learning Hyperedge-Dependent Node Embeddings

In this work, we introduce a hypergraph representation learning framework called Hypergraph Neural Networks (HNN) that jointly learns hyperedge embeddings along with a set of hyperedge-dependent embeddings for each node in the hypergraph. HNN derives multiple embeddings per node in the hypergraph where each embedding for a node is dependent on a specific hyperedge of that node. Notably, HNN is accurate, data-efficient, flexible with many interchangeable components, and useful for a wide range of hypergraph learning tasks. We evaluate the effectiveness of the HNN framework for hyperedge prediction and hypergraph node classification. We find that HNN achieves an overall mean gain of 7.72% and 11.37% across all baseline models and graphs for hyperedge prediction and hypergraph node classification, respectively.

preprint2022arXiv

Implicit Session Contexts for Next-Item Recommendations

Session-based recommender systems capture the short-term interest of a user within a session. Session contexts (i.e., a user's high-level interests or intents within a session) are not explicitly given in most datasets, and implicitly inferring session context as an aggregation of item-level attributes is crude. In this paper, we propose ISCON, which implicitly contextualizes sessions. ISCON first generates implicit contexts for sessions by creating a session-item graph, learning graph embeddings, and clustering to assign sessions to contexts. ISCON then trains a session context predictor and uses the predicted contexts' embeddings to enhance the next-item prediction accuracy. Experiments on four datasets show that ISCON has superior next-item prediction accuracy than state-of-the-art models. A case study of ISCON on the Reddit dataset confirms that assigned session contexts are unique and meaningful.

preprint2022arXiv

Network Report: A Structured Description for Network Datasets

The rapid development of network science and technologies depends on shareable datasets. Currently, there is no standard practice for reporting and sharing network datasets. Some network dataset providers only share links, while others provide some contexts or basic statistics. As a result, critical information may be unintentionally dropped, and network dataset consumers may misunderstand or overlook critical aspects. Inappropriately using a network dataset can lead to severe consequences (e.g., discrimination) especially when machine learning models on networks are deployed in high-stake domains. Challenges arise as networks are often used across different domains (e.g., network science, physics, etc) and have complex structures. To facilitate the communication between network dataset providers and consumers, we propose network report. A network report is a structured description that summarizes and contextualizes a network dataset. Network report extends the idea of dataset reports (e.g., Datasheets for Datasets) from prior work with network-specific descriptions of the non-i.i.d. nature, demographic information, network characteristics, etc. We hope network reports encourage transparency and accountability in network research and development across different fields.

preprint2021arXiv

Fundamental Tradeoffs in Distributionally Adversarial Training

Adversarial training is among the most effective techniques to improve the robustness of models against adversarial perturbations. However, the full effect of this approach on models is not well understood. For example, while adversarial training can reduce the adversarial risk (prediction error against an adversary), it sometimes increase standard risk (generalization error when there is no adversary). Even more, such behavior is impacted by various elements of the learning problem, including the size and quality of training data, specific forms of adversarial perturbations in the input, model overparameterization, and adversary's power, among others. In this paper, we focus on \emph{distribution perturbing} adversary framework wherein the adversary can change the test distribution within a neighborhood of the training data distribution. The neighborhood is defined via Wasserstein distance between distributions and the radius of the neighborhood is a measure of adversary's manipulative power. We study the tradeoff between standard risk and adversarial risk and derive the Pareto-optimal tradeoff, achievable over specific classes of models, in the infinite data limit with features dimension kept fixed. We consider three learning settings: 1) Regression with the class of linear models; 2) Binary classification under the Gaussian mixtures data model, with the class of linear classifiers; 3) Regression with the class of random features model (which can be equivalently represented as two-layer neural network with random first-layer weights). We show that a tradeoff between standard and adversarial risk is manifested in all three settings. We further characterize the Pareto-optimal tradeoff curves and discuss how a variety of factors, such as features correlation, adversary's power or the width of two-layer neural network would affect this tradeoff.

preprint2021arXiv

Personalized Visualization Recommendation

Visualization recommendation work has focused solely on scoring visualizations based on the underlying dataset and not the actual user and their past visualization feedback. These systems recommend the same visualizations for every user, despite that the underlying user interests, intent, and visualization preferences are likely to be fundamentally different, yet vitally important. In this work, we formally introduce the problem of personalized visualization recommendation and present a generic learning framework for solving it. In particular, we focus on recommending visualizations personalized for each individual user based on their past visualization interactions (e.g., viewed, clicked, manually created) along with the data from those visualizations. More importantly, the framework can learn from visualizations relevant to other users, even if the visualizations are generated from completely different datasets. Experiments demonstrate the effectiveness of the approach as it leads to higher quality visualization recommendations tailored to the specific user intent and preferences. To support research on this new problem, we release our user-centric visualization corpus consisting of 17.4k users exploring 94k datasets with 2.3 million attributes and 32k user-generated visualizations.

preprint2021arXiv

Temporal Network Sampling

Temporal networks representing a stream of timestamped edges are seemingly ubiquitous in the real-world. However, the massive size and continuous nature of these networks make them fundamentally challenging to analyze and leverage for descriptive and predictive modeling tasks. In this work, we propose a general framework for temporal network sampling with unbiased estimation. We develop online, single-pass sampling algorithms and unbiased estimators for temporal network sampling. The proposed algorithms enable fast, accurate, and memory-efficient statistical estimation of temporal network patterns and properties. In addition, we propose a temporally decaying sampling algorithm with unbiased estimators for studying networks that evolve in continuous time, where the strength of links is a function of time, and the motif patterns are temporally-weighted. In contrast to the prior notion of a $\bigtriangleup t$-temporal motif, the proposed formulation and algorithms for counting temporally weighted motifs are useful for forecasting tasks in networks such as predicting future links, or a future time-series variable of nodes and links. Finally, extensive experiments on a variety of temporal networks from different domains demonstrate the effectiveness of the proposed algorithms. A detailed ablation study is provided to understand the impact of the various components of the proposed framework.

preprint2020arXiv

Dynamic Node Embeddings from Edge Streams

Networks evolve continuously over time with the addition, deletion, and changing of links and nodes. Such temporal networks (or edge streams) consist of a sequence of timestamped edges and are seemingly ubiquitous. Despite the importance of accurately modeling the temporal information, most embedding methods ignore it entirely or approximate the temporal network using a sequence of static snapshot graphs. In this work, we propose using the notion of temporal walks for learning dynamic embeddings from temporal networks. Temporal walks capture the temporally valid interactions (e.g., flow of information, spread of disease) in the dynamic network in a lossless fashion. Based on the notion of temporal walks, we describe a general class of embeddings called continuous-time dynamic network embeddings (CTDNEs) that completely avoid the issues and problems that arise when approximating the temporal network as a sequence of static snapshot graphs. Unlike previous work, CTDNEs learn dynamic node embeddings directly from the temporal network at the finest temporal granularity and thus use only temporally valid information. As such CTDNEs naturally support online learning of the node embeddings in a streaming real-time fashion. Finally, the experiments demonstrate the effectiveness of this class of embedding methods that leverage temporal walks as it achieves an average gain in AUC of 11.9% across all methods and graphs.

preprint2020arXiv

From Static to Dynamic Node Embeddings

We introduce a general framework for leveraging graph stream data for temporal prediction-based applications. Our proposed framework includes novel methods for learning an appropriate graph time-series representation, modeling and weighting the temporal dependencies, and generalizing existing embedding methods for such data. While previous work on dynamic modeling and embedding has focused on representing a stream of timestamped edges using a time-series of graphs based on a specific time-scale (e.g., 1 month), we propose the notion of an $ε$-graph time-series that uses a fixed number of edges for each graph, and show its superiority over the time-scale representation used in previous work. In addition, we propose a number of new temporal models based on the notion of temporal reachability graphs and weighted temporal summary graphs. These temporal models are then used to generalize existing base (static) embedding methods by enabling them to incorporate and appropriately model temporal dependencies in the data. From the 6 temporal network models investigated (for each of the 7 base embedding methods), we find that the top-3 temporal models are always those that leverage the new $ε$-graph time-series representation. Furthermore, the dynamic embedding methods from the framework almost always achieve better predictive performance than existing state-of-the-art dynamic node embedding methods that are developed specifically for such temporal prediction tasks. Finally, the findings of this work are useful for designing better dynamic embedding methods.

preprint2020arXiv

On Proximity and Structural Role-based Embeddings in Networks: Misconceptions, Techniques, and Applications

Structural roles define sets of structurally similar nodes that are more similar to nodes inside the set than outside, whereas communities define sets of nodes with more connections inside the set than outside. Roles based on structural similarity and communities based on proximity are fundamentally different but important complementary notions. Recently, the notion of structural roles has become increasingly important and has gained a lot of attention due to the proliferation of work on learning representations (node/edge embeddings) from graphs that preserve the notion of roles. Unfortunately, recent work has sometimes confused the notion of structural roles and communities (based on proximity) leading to misleading or incorrect claims about the capabilities of network embedding methods. As such, this paper seeks to clarify the misconceptions and key differences between structural roles and communities, and formalize the general mechanisms (e.g., random walks, feature diffusion) that give rise to community or role-based structural embeddings. We theoretically prove that embedding methods based on these mechanisms result in either community or role-based structural embeddings. These mechanisms are typically easy to identify and can help researchers quickly determine whether a method preserves community or role-based embeddings. Furthermore, they also serve as a basis for developing new and improved methods for community or role-based structural embeddings. Finally, we analyze and discuss applications and data characteristics where community or role-based embeddings are most appropriate.

preprint2020arXiv

Structured Policy Iteration for Linear Quadratic Regulator

Linear quadratic regulator (LQR) is one of the most popular frameworks to tackle continuous Markov decision process tasks. With its fundamental theory and tractable optimal policy, LQR has been revisited and analyzed in recent years, in terms of reinforcement learning scenarios such as the model-free or model-based setting. In this paper, we introduce the \textit{Structured Policy Iteration} (S-PI) for LQR, a method capable of deriving a structured linear policy. Such a structured policy with (block) sparsity or low-rank can have significant advantages over the standard LQR policy: more interpretable, memory-efficient, and well-suited for the distributed setting. In order to derive such a policy, we first cast a regularized LQR problem when the model is known. Then, our Structured Policy Iteration (S-PI) algorithm, which takes a policy evaluation step and a policy improvement step in an iterative manner, can solve this regularized LQR efficiently. We further extend the S-PI algorithm to the model-free setting where a smoothing procedure is adopted to estimate the gradient. In both the known-model and model-free setting, we prove convergence analysis under the proper choice of parameters. Finally, the experiments demonstrate the advantages of S-PI in terms of balancing the LQR performance and level of structure by varying the weight parameter.

preprint2018arXiv

Higher-order Spectral Clustering for Heterogeneous Graphs

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks. Existing work in higher-order clustering has focused on simple homogeneous graphs with a single node/edge type. However, heterogeneous graphs consisting of nodes and edges of different types are seemingly ubiquitous in the real-world. In this work, we introduce the notion of typed-graphlet that explicitly captures the rich (typed) connectivity patterns in heterogeneous networks. Using typed-graphlets as a basis, we develop a general principled framework for higher-order clustering in heterogeneous networks. The framework provides mathematical guarantees on the optimality of the higher-order clustering obtained. The experiments demonstrate the effectiveness of the framework quantitatively for three important applications including (i) clustering, (ii) link prediction, and (iii) graph compression. In particular, the approach achieves a mean improvement of 43x over all methods and graphs for clustering while achieving a 18.7% and 20.8% improvement for link prediction and graph compression, respectively.