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Yueming Jin

Yueming Jin contributes to research discovery and scholarly infrastructure.

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Published work

13 published item(s)

preprint2026arXiv

From Articulated Kinematics to Routed Visual Control for Action-Conditioned Surgical Video Generation

Action-conditioned surgical video generation is a critical yet highly challenging problem for robotic surgery. The core difficulty is that low-dimensional control vectors must precisely govern complex image-space evolution. In this work, we propose a kinematic-to-visual lifting paradigm that converts articulated kinematics into a unified set of five image-aligned control modalities. Building on this representation, we introduce a hierarchically routed visual control framework that selectively activates the most relevant control modalities and motion scales. Instead of uniformly applying all control signals, our model performs hierarchical routing to dynamically allocate conditioning capacity. We further design kinematic-prior-guided routing loss functions to ensure physically meaningful, temporally stable, and efficient expert utilization. To improve efficiency, we propose a budgeted training and inference scheme that leverages routing-induced sparsity. By selectively discarding low-significance control pathways during training and execution, our approach enables adaptive computation that is complementary to standard distillation. We additionally construct a new benchmark with curated articulated annotations, obtained through human-in-the-loop semantic labeling and differentiable pose tracking, providing realistic supervision for action-conditioned surgical video generation. Extensive experiments demonstrate that our method consistently improves action faithfulness, visual fidelity, and cross-domain generalization over diverse baselines. Moreover, our efficient variant achieves substantial reductions in latency while maintaining strong control accuracy.

preprint2025arXiv

Spatio-Temporal Representation Decoupling and Enhancement for Federated Instrument Segmentation in Surgical Videos

Surgical instrument segmentation under Federated Learning (FL) is a promising direction, which enables multiple surgical sites to collaboratively train the model without centralizing datasets. However, there exist very limited FL works in surgical data science, and FL methods for other modalities do not consider inherent characteristics in surgical domain: i) different scenarios show diverse anatomical backgrounds while highly similar instrument representation; ii) there exist surgical simulators which promote large-scale synthetic data generation with minimal efforts. In this paper, we propose a novel Personalized FL scheme, Spatio-Temporal Representation Decoupling and Enhancement (FedST), which wisely leverages surgical domain knowledge during both local-site and global-server training to boost segmentation. Concretely, our model embraces a Representation Separation and Cooperation (RSC) mechanism in local-site training, which decouples the query embedding layer to be trained privately, to encode respective backgrounds. Meanwhile, other parameters are optimized globally to capture the consistent representations of instruments, including the temporal layer to capture similar motion patterns. A textual-guided channel selection is further designed to highlight site-specific features, facilitating model adapta tion to each site. Moreover, in global-server training, we propose Synthesis-based Explicit Representation Quantification (SERQ), which defines an explicit representation target based on synthetic data to synchronize the model convergence during fusion for improving model generalization.

preprint2023arXiv

Medical SAM Adapter: Adapting Segment Anything Model for Medical Image Segmentation

The Segment Anything Model (SAM) has recently gained popularity in the field of image segmentation due to its impressive capabilities in various segmentation tasks and its prompt-based interface. However, recent studies and individual experiments have shown that SAM underperforms in medical image segmentation, since the lack of the medical specific knowledge. This raises the question of how to enhance SAM's segmentation capability for medical images. In this paper, instead of fine-tuning the SAM model, we propose the Medical SAM Adapter (Med-SA), which incorporates domain-specific medical knowledge into the segmentation model using a light yet effective adaptation technique. In Med-SA, we propose Space-Depth Transpose (SD-Trans) to adapt 2D SAM to 3D medical images and Hyper-Prompting Adapter (HyP-Adpt) to achieve prompt-conditioned adaptation. We conduct comprehensive evaluation experiments on 17 medical image segmentation tasks across various image modalities. Med-SA outperforms several state-of-the-art (SOTA) medical image segmentation methods, while updating only 2\% of the parameters. Our code is released at https://github.com/KidsWithTokens/Medical-SAM-Adapter.

preprint2022arXiv

Exploring Intra- and Inter-Video Relation for Surgical Semantic Scene Segmentation

Automatic surgical scene segmentation is fundamental for facilitating cognitive intelligence in the modern operating theatre. Previous works rely on conventional aggregation modules (e.g., dilated convolution, convolutional LSTM), which only make use of the local context. In this paper, we propose a novel framework STswinCL that explores the complementary intra- and inter-video relations to boost segmentation performance, by progressively capturing the global context. We firstly develop a hierarchy Transformer to capture intra-video relation that includes richer spatial and temporal cues from neighbor pixels and previous frames. A joint space-time window shift scheme is proposed to efficiently aggregate these two cues into each pixel embedding. Then, we explore inter-video relation via pixel-to-pixel contrastive learning, which well structures the global embedding space. A multi-source contrast training objective is developed to group the pixel embeddings across videos with the ground-truth guidance, which is crucial for learning the global property of the whole data. We extensively validate our approach on two public surgical video benchmarks, including EndoVis18 Challenge and CaDIS dataset. Experimental results demonstrate the promising performance of our method, which consistently exceeds previous state-of-the-art approaches. Code is available at https://github.com/YuemingJin/STswinCL.

preprint2022arXiv

Personalizing Federated Medical Image Segmentation via Local Calibration

Medical image segmentation under federated learning (FL) is a promising direction by allowing multiple clinical sites to collaboratively learn a global model without centralizing datasets. However, using a single model to adapt to various data distributions from different sites is extremely challenging. Personalized FL tackles this issue by only utilizing partial model parameters shared from global server, while keeping the rest to adapt to its own data distribution in the local training of each site. However, most existing methods concentrate on the partial parameter splitting, while do not consider the \textit{inter-site in-consistencies} during the local training, which in fact can facilitate the knowledge communication over sites to benefit the model learning for improving the local accuracy. In this paper, we propose a personalized federated framework with \textbf{L}ocal \textbf{C}alibration (LC-Fed), to leverage the inter-site in-consistencies in both \textit{feature- and prediction- levels} to boost the segmentation. Concretely, as each local site has its alternative attention on the various features, we first design the contrastive site embedding coupled with channel selection operation to calibrate the encoded features. Moreover, we propose to exploit the knowledge of prediction-level in-consistency to guide the personalized modeling on the ambiguous regions, e.g., anatomical boundaries. It is achieved by computing a disagreement-aware map to calibrate the prediction. Effectiveness of our method has been verified on three medical image segmentation tasks with different modalities, where our method consistently shows superior performance to the state-of-the-art personalized FL methods. Code is available at https://github.com/jcwang123/FedLC.

preprint2022arXiv

Pseudo-label Guided Cross-video Pixel Contrast for Robotic Surgical Scene Segmentation with Limited Annotations

Surgical scene segmentation is fundamentally crucial for prompting cognitive assistance in robotic surgery. However, pixel-wise annotating surgical video in a frame-by-frame manner is expensive and time consuming. To greatly reduce the labeling burden, in this work, we study semi-supervised scene segmentation from robotic surgical video, which is practically essential yet rarely explored before. We consider a clinically suitable annotation situation under the equidistant sampling. We then propose PGV-CL, a novel pseudo-label guided cross-video contrast learning method to boost scene segmentation. It effectively leverages unlabeled data for a trusty and global model regularization that produces more discriminative feature representation. Concretely, for trusty representation learning, we propose to incorporate pseudo labels to instruct the pair selection, obtaining more reliable representation pairs for pixel contrast. Moreover, we expand the representation learning space from previous image-level to cross-video, which can capture the global semantics to benefit the learning process. We extensively evaluate our method on a public robotic surgery dataset EndoVis18 and a public cataract dataset CaDIS. Experimental results demonstrate the effectiveness of our method, consistently outperforming the state-of-the-art semi-supervised methods under different labeling ratios, and even surpassing fully supervised training on EndoVis18 with 10.1% labeling.

preprint2022arXiv

TraSeTR: Track-to-Segment Transformer with Contrastive Query for Instance-level Instrument Segmentation in Robotic Surgery

Surgical instrument segmentation -- in general a pixel classification task -- is fundamentally crucial for promoting cognitive intelligence in robot-assisted surgery (RAS). However, previous methods are struggling with discriminating instrument types and instances. To address the above issues, we explore a mask classification paradigm that produces per-segment predictions. We propose TraSeTR, a novel Track-to-Segment Transformer that wisely exploits tracking cues to assist surgical instrument segmentation. TraSeTR jointly reasons about the instrument type, location, and identity with instance-level predictions i.e., a set of class-bbox-mask pairs, by decoding query embeddings. Specifically, we introduce the prior query that encoded with previous temporal knowledge, to transfer tracking signals to current instances via identity matching. A contrastive query learning strategy is further applied to reshape the query feature space, which greatly alleviates the tracking difficulty caused by large temporal variations. The effectiveness of our method is demonstrated with state-of-the-art instrument type segmentation results on three public datasets, including two RAS benchmarks from EndoVis Challenges and one cataract surgery dataset CaDIS.

preprint2020arXiv

Automatic Gesture Recognition in Robot-assisted Surgery with Reinforcement Learning and Tree Search

Automatic surgical gesture recognition is fundamental for improving intelligence in robot-assisted surgery, such as conducting complicated tasks of surgery surveillance and skill evaluation. However, current methods treat each frame individually and produce the outcomes without effective consideration on future information. In this paper, we propose a framework based on reinforcement learning and tree search for joint surgical gesture segmentation and classification. An agent is trained to segment and classify the surgical video in a human-like manner whose direct decisions are re-considered by tree search appropriately. Our proposed tree search algorithm unites the outputs from two designed neural networks, i.e., policy and value network. With the integration of complementary information from distinct models, our framework is able to achieve the better performance than baseline methods using either of the neural networks. For an overall evaluation, our developed approach consistently outperforms the existing methods on the suturing task of JIGSAWS dataset in terms of accuracy, edit score and F1 score. Our study highlights the utilization of tree search to refine actions in reinforcement learning framework for surgical robotic applications.

preprint2020arXiv

Difficulty-aware Meta-learning for Rare Disease Diagnosis

Rare diseases have extremely low-data regimes, unlike common diseases with large amount of available labeled data. Hence, to train a neural network to classify rare diseases with a few per-class data samples is very challenging, and so far, catches very little attention. In this paper, we present a difficulty-aware meta-learning method to address rare disease classifications and demonstrate its capability to classify dermoscopy images. Our key approach is to first train and construct a meta-learning model from data of common diseases, then adapt the model to perform rare disease classification.To achieve this, we develop the difficulty-aware meta-learning method that dynamically monitors the importance of learning tasks during the meta-optimization stage. To evaluate our method, we use the recent ISIC 2018 skin lesion classification dataset, and show that with only five samples per class, our model can quickly adapt to classify unseen classes by a high AUC of 83.3%. Also, we evaluated several rare disease classification results in the public Dermofit Image Library to demonstrate the potential of our method for real clinical practice.

preprint2020arXiv

Learning Motion Flows for Semi-supervised Instrument Segmentation from Robotic Surgical Video

Performing low hertz labeling for surgical videos at intervals can greatly releases the burden of surgeons. In this paper, we study the semi-supervised instrument segmentation from robotic surgical videos with sparse annotations. Unlike most previous methods using unlabeled frames individually, we propose a dual motion based method to wisely learn motion flows for segmentation enhancement by leveraging temporal dynamics. We firstly design a flow predictor to derive the motion for jointly propagating the frame-label pairs given the current labeled frame. Considering the fast instrument motion, we further introduce a flow compensator to estimate intermediate motion within continuous frames, with a novel cycle learning strategy. By exploiting generated data pairs, our framework can recover and even enhance temporal consistency of training sequences to benefit segmentation. We validate our framework with binary, part, and type tasks on 2017 MICCAI EndoVis Robotic Instrument Segmentation Challenge dataset. Results show that our method outperforms the state-of-the-art semi-supervised methods by a large margin, and even exceeds fully supervised training on two tasks.

preprint2020arXiv

LRTD: Long-Range Temporal Dependency based Active Learning for Surgical Workflow Recognition

Automatic surgical workflow recognition in video is an essentially fundamental yet challenging problem for developing computer-assisted and robotic-assisted surgery. Existing approaches with deep learning have achieved remarkable performance on analysis of surgical videos, however, heavily relying on large-scale labelled datasets. Unfortunately, the annotation is not often available in abundance, because it requires the domain knowledge of surgeons. In this paper, we propose a novel active learning method for cost-effective surgical video analysis. Specifically, we propose a non-local recurrent convolutional network (NL-RCNet), which introduces non-local block to capture the long-range temporal dependency (LRTD) among continuous frames. We then formulate an intra-clip dependency score to represent the overall dependency within this clip. By ranking scores among clips in unlabelled data pool, we select the clips with weak dependencies to annotate, which indicates the most informative ones to better benefit network training. We validate our approach on a large surgical video dataset (Cholec80) by performing surgical workflow recognition task. By using our LRTD based selection strategy, we can outperform other state-of-the-art active learning methods. Using only up to 50% of samples, our approach can exceed the performance of full-data training.

preprint2020arXiv

Robust Medical Instrument Segmentation Challenge 2019

Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions. While numerous methods for detecting, segmenting and tracking of medical instruments based on endoscopic video images have been proposed in the literature, key limitations remain to be addressed: Firstly, robustness, that is, the reliable performance of state-of-the-art methods when run on challenging images (e.g. in the presence of blood, smoke or motion artifacts). Secondly, generalization; algorithms trained for a specific intervention in a specific hospital should generalize to other interventions or institutions. In an effort to promote solutions for these limitations, we organized the Robust Medical Instrument Segmentation (ROBUST-MIS) challenge as an international benchmarking competition with a specific focus on the robustness and generalization capabilities of algorithms. For the first time in the field of endoscopic image processing, our challenge included a task on binary segmentation and also addressed multi-instance detection and segmentation. The challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures from three different types of surgery. The validation of the competing methods for the three tasks (binary segmentation, multi-instance detection and multi-instance segmentation) was performed in three different stages with an increasing domain gap between the training and the test data. The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap. While the average detection and segmentation quality of the best-performing algorithms is high, future research should concentrate on detection and segmentation of small, crossing, moving and transparent instrument(s) (parts).

preprint2020arXiv

Robust Multimodal Brain Tumor Segmentation via Feature Disentanglement and Gated Fusion

Accurate medical image segmentation commonly requires effective learning of the complementary information from multimodal data. However, in clinical practice, we often encounter the problem of missing imaging modalities. We tackle this challenge and propose a novel multimodal segmentation framework which is robust to the absence of imaging modalities. Our network uses feature disentanglement to decompose the input modalities into the modality-specific appearance code, which uniquely sticks to each modality, and the modality-invariant content code, which absorbs multimodal information for the segmentation task. With enhanced modality-invariance, the disentangled content code from each modality is fused into a shared representation which gains robustness to missing data. The fusion is achieved via a learning-based strategy to gate the contribution of different modalities at different locations. We validate our method on the important yet challenging multimodal brain tumor segmentation task with the BRATS challenge dataset. With competitive performance to the state-of-the-art approaches for full modality, our method achieves outstanding robustness under various missing modality(ies) situations, significantly exceeding the state-of-the-art method by over 16% in average for Dice on whole tumor segmentation.