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Researcher profile

Sören Auer

Sören Auer contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Digital LibrariesComputation and LanguageInformation RetrievalArtificial Intelligencecs.CYMachine Learningcond-mat.mtrl-sciDatabases

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Published work

20 published item(s)

preprint2026arXiv

EmoNet-Voice: A Fine-Grained, Expert-Verified Benchmark for Speech Emotion Detection

Speech emotion recognition (SER) systems are constrained by existing datasets that typically cover only 6-10 basic emotions, lack scale and diversity, and face ethical challenges when collecting sensitive emotional states. We introduce EMONET-VOICE, a comprehensive resource addressing these limitations through two components: (1) EmoNet-Voice Big, a 5,000-hour multilingual pre-training dataset spanning 40 fine-grained emotion categories across 11 voices and 4 languages, and (2) EmoNet-Voice Bench, a rigorously validated benchmark of 4,7k samples with unanimous expert consensus on emotion presence and intensity levels. Using state-of-the-art synthetic voice generation, our privacy-preserving approach enables ethical inclusion of sensitive emotions (e.g., pain, shame) while maintaining controlled experimental conditions. Each sample underwent validation by three psychology experts. We demonstrate that our Empathic Insight models trained on our synthetic data achieve strong real-world dataset generalization, as tested on EmoDB and RAVDESS. Furthermore, our comprehensive evaluation reveals that while high-arousal emotions (e.g., anger: 95% accuracy) are readily detected, the benchmark successfully exposes the difficulty of distinguishing perceptually similar emotions (e.g., sadness vs. distress: 63% discrimination), providing quantifiable metrics for advancing nuanced emotion AI. EMONET-VOICE establishes a new paradigm for large-scale, ethically-sourced, fine-grained SER research.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

MLReplicate: Benchmarking Autonomous Research Systems for Machine Learning Reproducibility

Autonomous research systems capable of generating complete scientific manuscripts have advanced rapidly, yet robust and realistic evaluation frameworks have failed to keep pace. To bridge this gap, we introduce MLReplicate, an end-to-end benchmark evaluating autonomous research systems on machine learning reproducibility. The benchmark was constructed from ICML 2025 outstanding papers reformulated into standardized input specifications and evaluated across 6 state-of-the-art research systems: AI SCIENTIST-V1, AI SCIENTIST-V2, AGENT LABORATORY, CYCLERESEARCHER, AI RESEARCHER, and TINY SCIENTIST, yielding 45 generated manuscripts, with 3 failed experiments. Outputs are assessed using a dual-protocol approach that combines automated conference-style review and structured expert human evaluation, while tracking computational cost, runtime, and the amount of required human intervention. The automated conference-style review accepted 10 out of 37 valid submissions. An additional 8 submissions were desk-rejected before review for failing to meet the minimum page threshold. In contrast to automated reviews, human reviewers consistently identified methodological flaws, hallucinated experimental results, and reproducibility failures across all systems, and 59% of accepted automated reviews contained fabricated or unsupported claims. We further find that neither token budget nor computational cost predicts output quality: the cheapest system outperforms the most resource-intensive system in human evaluation, despite a 38-fold difference in input tokens. We thus demonstrate that autonomous research workflow design matters more than the scale of compute. MLReplicate exposes a substantial gap between current autonomous research systems and genuine scientific rigor, and establishes a practical, extensible evaluation framework for systematic progress toward trustworthy AI-driven scientific discovery.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Enriching Scholarly Knowledge with Context

Leveraging a GraphQL-based federated query service that integrates multiple scholarly communication infrastructures (specifically, DataCite, ORCID, ROR, OpenAIRE, Semantic Scholar, Wikidata and Altmetric), we develop a novel web widget based approach for the presentation of scholarly knowledge with rich contextual information. We implement the proposed approach in the Open Research Knowledge Graph (ORKG) and showcase it on three kinds of widgets. First, we devise a widget for the ORKG paper view that presents contextual information about related datasets, software, project information, topics, and metrics. Second, we extend the ORKG contributor profile view with contextual information including authored articles, developed software, linked projects, and research interests. Third, we advance ORKG comparison faceted search by introducing contextual facets (e.g. citations). As a result, the devised approach enables presenting ORKG scholarly knowledge flexibly enriched with contextual information sourced in a federated manner from numerous technologically heterogeneous scholarly communication infrastructures.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Open Research Knowledge Graph:A System Walkthrough

Despite improved digital access to scholarly literature in the last decades, the fundamental principles of scholarly communication remain unchanged and continue to be largely document-based. Scholarly knowledge remains locked in representations that are inadequate for machine processing. The Open Research Knowledge Graph (ORKG) is an infrastructure for representing, curating and exploring scholarly knowledge in a machine actionable manner. We demonstrate the core functionality of ORKG for representing research contributions published in scholarly articles. A video of the demonstration and the system are available online.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Plumber: A Modular Framework to Create Information Extraction Pipelines

Information Extraction (IE) tasks are commonly studied topics in various domains of research. Hence, the community continuously produces multiple techniques, solutions, and tools to perform such tasks. However, running those tools and integrating them within existing infrastructure requires time, expertise, and resources. One pertinent task here is triples extraction and linking, where structured triples are extracted from a text and aligned to an existing Knowledge Graph (KG). In this paper, we present PLUMBER, the first framework that allows users to manually and automatically create suitable IE pipelines from a community-created pool of tools to perform triple extraction and alignment on unstructured text. Our approach provides an interactive medium to alter the pipelines and perform IE tasks. A short video to show the working of the framework for different use-cases is available online under: https://www.youtube.com/watch?v=XC9rJNIUv8g

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

The Digitalization of Bioassays in the Open Research Knowledge Graph

Background: Recent years are seeing a growing impetus in the semantification of scholarly knowledge at the fine-grained level of scientific entities in knowledge graphs. The Open Research Knowledge Graph (ORKG) https://www.orkg.org/ represents an important step in this direction, with thousands of scholarly contributions as structured, fine-grained, machine-readable data. There is a need, however, to engender change in traditional community practices of recording contributions as unstructured, non-machine-readable text. For this in turn, there is a strong need for AI tools designed for scientists that permit easy and accurate semantification of their scholarly contributions. We present one such tool, ORKG-assays. Implementation: ORKG-assays is a freely available AI micro-service in ORKG written in Python designed to assist scientists obtain semantified bioassays as a set of triples. It uses an AI-based clustering algorithm which on gold-standard evaluations over 900 bioassays with 5,514 unique property-value pairs for 103 predicates shows competitive performance. Results and Discussion: As a result, semantified assay collections can be surveyed on the ORKG platform via tabulation or chart-based visualizations of key property values of the chemicals and compounds offering smart knowledge access to biochemists and pharmaceutical researchers in the advancement of drug development.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

TinyGenius: Intertwining Natural Language Processing with Microtask Crowdsourcing for Scholarly Knowledge Graph Creation

As the number of published scholarly articles grows steadily each year, new methods are needed to organize scholarly knowledge so that it can be more efficiently discovered and used. Natural Language Processing (NLP) techniques are able to autonomously process scholarly articles at scale and to create machine readable representations of the article content. However, autonomous NLP methods are by far not sufficiently accurate to create a high-quality knowledge graph. Yet quality is crucial for the graph to be useful in practice. We present TinyGenius, a methodology to validate NLP-extracted scholarly knowledge statements using microtasks performed with crowdsourcing. The scholarly context in which the crowd workers operate has multiple challenges. The explainability of the employed NLP methods is crucial to provide context in order to support the decision process of crowd workers. We employed TinyGenius to populate a paper-centric knowledge graph, using five distinct NLP methods. In the end, the resulting knowledge graph serves as a digital library for scholarly articles.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Analysing the Requirements for an Open Research Knowledge Graph: Use Cases, Quality Requirements and Construction Strategies

Current science communication has a number of drawbacks and bottlenecks which have been subject of discussion lately: Among others, the rising number of published articles makes it nearly impossible to get a full overview of the state of the art in a certain field, or reproducibility is hampered by fixed-length, document-based publications which normally cannot cover all details of a research work. Recently, several initiatives have proposed knowledge graphs (KG) for organising scientific information as a solution to many of the current issues. The focus of these proposals is, however, usually restricted to very specific use cases. In this paper, we aim to transcend this limited perspective and present a comprehensive analysis of requirements for an Open Research Knowledge Graph (ORKG) by (a) collecting and reviewing daily core tasks of a scientist, (b) establishing their consequential requirements for a KG-based system, (c) identifying overlaps and specificities, and their coverage in current solutions. As a result, we map necessary and desirable requirements for successful KG-based science communication, derive implications, and outline possible solutions.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Better Call the Plumber: Orchestrating Dynamic Information Extraction Pipelines

In the last decade, a large number of Knowledge Graph (KG) information extraction approaches were proposed. Albeit effective, these efforts are disjoint, and their collective strengths and weaknesses in effective KG information extraction (IE) have not been studied in the literature. We propose Plumber, the first framework that brings together the research community's disjoint IE efforts. The Plumber architecture comprises 33 reusable components for various KG information extraction subtasks, such as coreference resolution, entity linking, and relation extraction. Using these components,Plumber dynamically generates suitable information extraction pipelines and offers overall 264 distinct pipelines.We study the optimization problem of choosing suitable pipelines based on input sentences. To do so, we train a transformer-based classification model that extracts contextual embeddings from the input and finds an appropriate pipeline. We study the efficacy of Plumber for extracting the KG triples using standard datasets over two KGs: DBpedia, and Open Research Knowledge Graph (ORKG). Our results demonstrate the effectiveness of Plumber in dynamically generating KG information extraction pipelines,outperforming all baselines agnostics of the underlying KG. Furthermore,we provide an analysis of collective failure cases, study the similarities and synergies among integrated components, and discuss their limitations.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Metadata Analysis of Open Educational Resources

Open Educational Resources (OERs) are openly licensed educational materials that are widely used for learning. Nowadays, many online learning repositories provide millions of OERs. Therefore, it is exceedingly difficult for learners to find the most appropriate OER among these resources. Subsequently, the precise OER metadata is critical for providing high-quality services such as search and recommendation. Moreover, metadata facilitates the process of automatic OER quality control as the continuously increasing number of OERs makes manual quality control extremely difficult. This work uses the metadata of 8,887 OERs to perform an exploratory data analysis on OER metadata. Accordingly, this work proposes metadata-based scoring and prediction models to anticipate the quality of OERs. Based on the results, our analysis demonstrated that OER metadata and OER content qualities are closely related, as we could detect high-quality OERs with an accuracy of 94.6%. Our model was also evaluated on 884 educational videos from Youtube to show its applicability on other educational repositories.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Compacting Frequent Star Patterns in RDF Graphs

Knowledge graphs have become a popular formalism for representing entities and their properties using a graph data model, e.g., the Resource Description Framework (RDF). An RDF graph comprises entities of the same type connected to objects or other entities using labeled edges annotated with properties. RDF graphs usually contain entities that share the same objects in a certain group of properties, i.e., they match star patterns composed of these properties and objects. In case the number of these entities or properties in these star patterns is large, the size of the RDF graph and query processing are negatively impacted; we refer these star patterns as frequent star patterns. We address the problem of identifying frequent star patterns in RDF graphs and devise the concept of factorized RDF graphs, which denote compact representations of RDF graphs where the number of frequent star patterns is minimized. We also develop computational methods to identify frequent star patterns and generate a factorized RDF graph, where compact RDF molecules replace frequent star patterns. A compact RDF molecule of a frequent star pattern denotes an RDF subgraph that instantiates the corresponding star pattern. Instead of having all the entities matching the original frequent star pattern, a surrogate entity is added and related to the properties of the frequent star pattern; it is linked to the entities that originally match the frequent star pattern. We evaluate the performance of our factorization techniques on several RDF graph benchmarks and compare with a baseline built on top of gSpan, a state-of-the-art algorithm to detect frequent patterns. The outcomes evidence the efficiency of proposed approach and show that our techniques are able to reduce execution time of the baseline approach in at least three orders of magnitude reducing the RDF graph size by up to 66.56%.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Improving Scholarly Knowledge Representation: Evaluating BERT-based Models for Scientific Relation Classification

With the rapid growth of research publications, there is a vast amount of scholarly knowledge that needs to be organized in digital libraries. To deal with this challenge, techniques relying on knowledge-graph structures are being advocated. Within such graph-based pipelines, inferring relation types between related scientific concepts is a crucial step. Recently, advanced techniques relying on language models pre-trained on the large corpus have been popularly explored for automatic relation classification. Despite remarkable contributions that have been made, many of these methods were evaluated under different scenarios, which limits their comparability. To this end, we present a thorough empirical evaluation on eight Bert-based classification models by focusing on two key factors: 1) Bert model variants, and 2) classification strategies. Experiments on three corpora show that domain-specific pre-training corpus benefits the Bert-based classification model to identify the type of scientific relations. Although the strategy of predicting a single relation each time achieves a higher classification accuracy than the strategy of identifying multiple relation types simultaneously in general, the latter strategy demonstrates a more consistent performance in the corpus with either a large or small size of annotations. Our study aims to offer recommendations to the stakeholders of digital libraries for selecting the appropriate technique to build knowledge-graph-based systems for enhanced scholarly information organization.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

NLPContributions: An Annotation Scheme for Machine Reading of Scholarly Contributions in Natural Language Processing Literature

We describe an annotation initiative to capture the scholarly contributions in natural language processing (NLP) articles, particularly, for the articles that discuss machine learning (ML) approaches for various information extraction tasks. We develop the annotation task based on a pilot annotation exercise on 50 NLP-ML scholarly articles presenting contributions to five information extraction tasks 1. machine translation, 2. named entity recognition, 3. question answering, 4. relation classification, and 5. text classification. In this article, we describe the outcomes of this pilot annotation phase. Through the exercise we have obtained an annotation methodology; and found ten core information units that reflect the contribution of the NLP-ML scholarly investigations. The resulting annotation scheme we developed based on these information units is called NLPContributions. The overarching goal of our endeavor is four-fold: 1) to find a systematic set of patterns of subject-predicate-object statements for the semantic structuring of scholarly contributions that are more or less generically applicable for NLP-ML research articles; 2) to apply the discovered patterns in the creation of a larger annotated dataset for training machine readers of research contributions; 3) to ingest the dataset into the Open Research Knowledge Graph (ORKG) infrastructure as a showcase for creating user-friendly state-of-the-art overviews; 4) to integrate the machine readers into the ORKG to assist users in the manual curation of their respective article contributions. We envision that the NLPContributions methodology engenders a wider discussion on the topic toward its further refinement and development. Our pilot annotated dataset of 50 NLP-ML scholarly articles according to the NLPContributions scheme is openly available to the research community at https://doi.org/10.25835/0019761.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Operational Research Literature as a Use Case for the Open Research Knowledge Graph

The Open Research Knowledge Graph (ORKG) provides machine-actionable access to scholarly literature that habitually is written in prose. Following the FAIR principles, the ORKG makes traditional, human-coded knowledge findable, accessible, interoperable, and reusable in a structured manner in accordance with the Linked Open Data paradigm. At the moment, in ORKG papers are described manually, but in the long run the semantic depth of the literature at scale needs automation. Operational Research is a suitable test case for this vision because the mathematical field and, hence, its publication habits are highly structured: A mundane problem is formulated as a mathematical model, solved or approximated numerically, and evaluated systematically. We study the existing literature with respect to the Assembly Line Balancing Problem and derive a semantic description in accordance with the ORKG. Eventually, selected papers are ingested to test the semantic description and refine it further.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Quality Prediction of Open Educational Resources A Metadata-based Approach

In the recent decade, online learning environments have accumulated millions of Open Educational Resources (OERs). However, for learners, finding relevant and high quality OERs is a complicated and time-consuming activity. Furthermore, metadata play a key role in offering high quality services such as recommendation and search. Metadata can also be used for automatic OER quality control as, in the light of the continuously increasing number of OERs, manual quality control is getting more and more difficult. In this work, we collected the metadata of 8,887 OERs to perform an exploratory data analysis to observe the effect of quality control on metadata quality. Subsequently, we propose an OER metadata scoring model, and build a metadata-based prediction model to anticipate the quality of OERs. Based on our data and model, we were able to detect high-quality OERs with the F1 score of 94.6%.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Question Answering on Scholarly Knowledge Graphs

Answering questions on scholarly knowledge comprising text and other artifacts is a vital part of any research life cycle. Querying scholarly knowledge and retrieving suitable answers is currently hardly possible due to the following primary reason: machine inactionable, ambiguous and unstructured content in publications. We present JarvisQA, a BERT based system to answer questions on tabular views of scholarly knowledge graphs. Such tables can be found in a variety of shapes in the scholarly literature (e.g., surveys, comparisons or results). Our system can retrieve direct answers to a variety of different questions asked on tabular data in articles. Furthermore, we present a preliminary dataset of related tables and a corresponding set of natural language questions. This dataset is used as a benchmark for our system and can be reused by others. Additionally, JarvisQA is evaluated on two datasets against other baselines and shows an improvement of two to three folds in performance compared to related methods.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Representing Semantified Biological Assays in the Open Research Knowledge Graph

In the biotechnology and biomedical domains, recent text mining efforts advocate for machine-interpretable, and preferably, semantified, documentation formats of laboratory processes. This includes wet-lab protocols, (in)organic materials synthesis reactions, genetic manipulations and procedures for faster computer-mediated analysis and predictions. Herein, we present our work on the representation of semantified bioassays in the Open Research Knowledge Graph (ORKG). In particular, we describe a semantification system work-in-progress to generate, automatically and quickly, the critical semantified bioassay data mass needed to foster a consistent user audience to adopt the ORKG for recording their bioassays and facilitate the organisation of research, according to FAIR principles.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

SciBERT-based Semantification of Bioassays in the Open Research Knowledge Graph

As a novel contribution to the problem of semantifying biological assays, in this paper, we propose a neural-network-based approach to automatically semantify, thereby structure, unstructured bioassay text descriptions. Experimental evaluations, to this end, show promise as the neural-based semantification significantly outperforms a naive frequency-based baseline approach. Specifically, the neural method attains 72% F1 versus 47% F1 from the frequency-based method.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

The STEM-ECR Dataset: Grounding Scientific Entity References in STEM Scholarly Content to Authoritative Encyclopedic and Lexicographic Sources

We introduce the STEM (Science, Technology, Engineering, and Medicine) Dataset for Scientific Entity Extraction, Classification, and Resolution, version 1.0 (STEM-ECR v1.0). The STEM-ECR v1.0 dataset has been developed to provide a benchmark for the evaluation of scientific entity extraction, classification, and resolution tasks in a domain-independent fashion. It comprises abstracts in 10 STEM disciplines that were found to be the most prolific ones on a major publishing platform. We describe the creation of such a multidisciplinary corpus and highlight the obtained findings in terms of the following features: 1) a generic conceptual formalism for scientific entities in a multidisciplinary scientific context; 2) the feasibility of the domain-independent human annotation of scientific entities under such a generic formalism; 3) a performance benchmark obtainable for automatic extraction of multidisciplinary scientific entities using BERT-based neural models; 4) a delineated 3-step entity resolution procedure for human annotation of the scientific entities via encyclopedic entity linking and lexicographic word sense disambiguation; and 5) human evaluations of Babelfy returned encyclopedic links and lexicographic senses for our entities. Our findings cumulatively indicate that human annotation and automatic learning of multidisciplinary scientific concepts as well as their semantic disambiguation in a wide-ranging setting as STEM is reasonable.

0 citations0 reviewsNo code linkedOpen access