Researcher profile

Md Selim

Md Selim contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

RA-CMF: Region-Adaptive Conditional MeanFlow for CT Image Reconstruction

The use of CT imaging is important for screening, diagnosis, therapy planning, and prognosis of lung cancers. Unfortunately, due to differences in imaging protocols and scanner models, CT images acquired by different means may show large differences in noise statistics, contrast, and texture. In this study, we develop a novel conditional MeanFlow pipeline for CT image reconstruction. We introduce a conditional MeanFlow network that models the enhancement trajectory by predicting image-conditioned flow fields given intermediate image states. The image enhancement network is trained with a MeanFlow consistency loss along with the image reconstruction loss. In order to provide an adaptive refinement process in terms of spatial location of enhancements, we integrate a regional reinforcement learning-driven policy network into our approach. The policy network receives information about the MeanFlow rollouts and provides predictions in terms of tile-wise refinement budgets, stopping criteria, and total budget allocation of enhancement processes. Our policy network is trained through reinforcement learning in a policy gradient framework, where the goal of the training reward is to maximize improvement of enhancements while minimizing unnecessary computations and avoiding instabilities. In this way, our approach combines conditional flow-based enhancement with reinforcement learning-based spatial enhancement control. This allows our approach to focus more attention on enhancing difficult areas while stabilizing areas already showing sufficient quality. Our results show high accuracy in the tumor ROI, with the average radiomic feature CCC being 0.96, an average PSNR of 31.30 $\pm$ 4.16, and average SSIM of 0.94 $\pm$ 0.07. Moreover, there is an improvement in the overall quality of images, with an average PSNR of 34.23 $\pm$ 1.71 and average SSIM of 0.95 $\pm$ 0.01.

preprint2022arXiv

Multivariate Sparse Group Lasso Joint Model for Radiogenomics Data

Radiogenomics is an emerging field in cancer research that combines medical imaging data with genomic data to predict patients clinical outcomes. In this paper, we propose a multivariate sparse group lasso joint model to integrate imaging and genomic data for building prediction models. Specifically, we jointly consider two models, one regresses imaging features on genomic features, and the other regresses patients clinical outcomes on genomic features. The regularization penalties through sparse group lasso allow incorporation of intrinsic group information, e.g. biological pathway and imaging category, to select both important intrinsic groups and important features within a group. To integrate information from the two models, in each model, we introduce a weight in the penalty term of each individual genomic feature, where the weight is inversely correlated with the model coefficient of that feature in the other model. This weight allows a feature to have a higher chance of selection by one model if it is selected by the other model. Our model is applicable to both continuous and time to event outcomes. It also allows the use of two separate datasets to fit the two models, addressing a practical challenge that many genomic datasets do not have imaging data available. Simulations and real data analyses demonstrate that our method outperforms existing methods in the literature.

preprint2020arXiv

STAN-CT: Standardizing CT Image using Generative Adversarial Network

Computed tomography (CT) plays an important role in lung malignancy diagnostics and therapy assessment and facilitating precision medicine delivery. However, the use of personalized imaging protocols poses a challenge in large-scale cross-center CT image radiomic studies. We present an end-to-end solution called STAN-CT for CT image standardization and normalization, which effectively reduces discrepancies in image features caused by using different imaging protocols or using different CT scanners with the same imaging protocol. STAN-CT consists of two components: 1) a novel Generative Adversarial Networks (GAN) model that is capable of effectively learning the data distribution of a standard imaging protocol with only a few rounds of generator training, and 2) an automatic DICOM reconstruction pipeline with systematic image quality control that ensure the generation of high-quality standard DICOM images. Experimental results indicate that the training efficiency and model performance of STAN-CT have been significantly improved compared to the state-of-the-art CT image standardization and normalization algorithms.