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Kanaka Rajan

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Published work

7 published item(s)

preprint2026arXiv

A dimensional R2 regression metric

R2 score is the standard metric for evaluating regression tasks, offering a normalized magnitude-agnostic measure of accuracy that captures variance. However, R2 has three key limitations: it is limited to at most two dimensional inputs, it reduces the score to a single scalar that hides rich patterns of prediction accuracy, and it is sensitive to low-variance noise channels which can yield large, uninterpretable negative values. We introduce the Dimensional R2 score (Dim-R2), a simple extension of R2 that accepts data of arbitrary dimensionality, provides a multidimensional view of accuracy, and reduces sensitivity to noise. We demonstrate its advantages on both synthetic sinusoidal data and three multidimensional regression datasets. Dim-R2 offers an interpretable and flexible metric that highlights patterns in regression accuracy, guiding regression modeling.

preprint2022arXiv

Efficient and robust multi-task learning in the brain with modular latent primitives

Biological agents do not have infinite resources to learn new things. For this reason, a central aspect of human learning is the ability to recycle previously acquired knowledge in a way that allows for faster, less resource-intensive acquisition of new skills. In spite of that, how neural networks in the brain leverage existing knowledge to learn new computations is not well understood. In this work, we study this question in artificial recurrent neural networks (RNNs) trained on a corpus of commonly used neuroscience tasks. Combining brain-inspired inductive biases we call functional and structural, we propose a system that learns new tasks by building on top of pre-trained latent dynamics organised into separate recurrent modules. These modules, acting as prior knowledge acquired previously through evolution or development, are pre-trained on the statistics of the full corpus of tasks so as to be independent and maximally informative. The resulting model, we call a Modular Latent Primitives (MoLaP) network, allows for learning multiple tasks while keeping parameter counts, and updates, low. We also show that the skills acquired with our approach are more robust to a broad range of perturbations compared to those acquired with other multi-task learning strategies, and that generalisation to new tasks is facilitated. This work offers a new perspective on achieving efficient multi-task learning in the brain, illustrating the benefits of leveraging pre-trained latent dynamical primitives.

preprint2016arXiv

Recurrent Network Models Of Sequence Generation And Memory

Sequential activation of neurons is a common feature of network activity during a variety of behaviors, including working memory and decision making. Previous network models for sequences and memory emphasized specialized architectures in which a principled mechanism is pre-wired into their connectivity. Here we demonstrate that, starting from random connectivity and modifying a small fraction of connections, a largely disordered recur- rent network can produce sequences and implement working memory efficiently. We use this process, called Partial In-Network Training (PINning), to model and match cellular resolution imaging data from the posterior parietal cortex during a virtual memory- guided two-alternative forced-choice task. Analysis of the connectivity reveals that sequences propagate by the cooperation between recurrent synaptic interactions and external inputs, rather than through feedforward or asymmetric connections. Together our results suggest that neural sequences may emerge through learning from largely unstructured network architectures.

preprint2012arXiv

Learning quadratic receptive fields from neural responses to natural stimuli

Models of neural responses to stimuli with complex spatiotemporal correlation structure often assume that neurons are only selective for a small number of linear projections of a potentially high-dimensional input. Here we explore recent modeling approaches where the neural response depends on the quadratic form of the input rather than on its linear projection, that is, the neuron is sensitive to the local covariance structure of the signal preceding the spike. To infer this quadratic dependence in the presence of arbitrary (e.g. naturalistic) stimulus distribution, we review several inference methods, focussing in particular on two information-theory-based approaches (maximization of stimulus energy or of noise entropy) and a likelihood-based approach (Bayesian spike-triggered covariance, extensions of generalized linear models). We analyze the formal connection between the likelihood-based and information-based approaches to show how they lead to consistent inference. We demonstrate the practical feasibility of these procedures by using model neurons responding to a flickering variance stimulus.

preprint2012arXiv

Maximally informative "stimulus energies" in the analysis of neural responses to natural signals

The concept of feature selectivity in sensory signal processing can be formalized as dimensionality reduction: in a stimulus space of very high dimensions, neurons respond only to variations within some smaller, relevant subspace. But if neural responses exhibit invariances, then the relevant subspace typically cannot be reached by a Euclidean projection of the original stimulus. We argue that, in several cases, we can make progress by appealing to the simplest nonlinear construction, identifying the relevant variables as quadratic forms, or "stimulus energies." Natural examples include non-phase-locked cells in the auditory system, complex cells in visual cortex, and motion-sensitive neurons in the visual system. Generalizing the idea of maximally informative dimensions, we show that one can search for the kernels of the relevant quadratic forms by maximizing the mutual information between the stimulus energy and the arrival times of action potentials. Simple implementations of this idea successfully recover the underlying properties of model neurons even when the number of parameters in the kernel is comparable to the number of action potentials and stimuli are completely natural. We explore several generalizations that allow us to incorporate plausible structure into the kernel and thereby restrict the number of parameters. We hope that this approach will add significantly to the set of tools available for the analysis of neural responses to complex, naturalistic stimuli.

preprint2010arXiv

Interactions between Intrinsic and Stimulus-Evoked Activity in Recurrent Neural Networks

Trial-to-trial variability is an essential feature of neural responses, but its source is a subject of active debate. Response variability (Mast and Victor, 1991; Arieli et al., 1995 & 1996; Anderson et al., 2000 & 2001; Kenet et al., 2003; Petersen et al., 2003a & b; Fiser, Chiu and Weliky, 2004; MacLean et al., 2005; Yuste et al., 2005; Vincent et al., 2007) is often treated as random noise, generated either by other brain areas, or by stochastic processes within the circuitry being studied. We call such sources of variability external to stress the independence of this form of noise from activity driven by the stimulus. Variability can also be generated internally by the same network dynamics that generates responses to a stimulus. How can we distinguish between external and internal sources of response variability? Here we show that internal sources of variability interact nonlinearly with stimulus-induced activity, and this interaction yields a suppression of noise in the evoked state. This provides a theoretical basis and potential mechanism for the experimental observation that, in many brain areas, stimuli cause significant suppression of neuronal variability (Werner and Mountcastle, 1963; Fortier, Smith and Kalaska, 1993; Anderson et al., 2000; Friedrich and Laurent, 2004; Churchland et al., 2006; Finn, Priebe and Ferster, 2007; Mitchell, Sundberg and Reynolds, 2007; Churchland et al., 2009). The combined theoretical and experimental results suggest that internally generated activity is a significant contributor to response variability in neural circuits.

preprint2010arXiv

Stimulus-Dependent Suppression of Chaos in Recurrent Neural Networks

Neuronal activity arises from an interaction between ongoing firing generated spontaneously by neural circuits and responses driven by external stimuli. Using mean-field analysis, we ask how a neural network that intrinsically generates chaotic patterns of activity can remain sensitive to extrinsic input. We find that inputs not only drive network responses, they also actively suppress ongoing activity, ultimately leading to a phase transition in which chaos is completely eliminated. The critical input intensity at the phase transition is a non-monotonic function of stimulus frequency, revealing a "resonant" frequency at which the input is most effective at suppressing chaos even though the power spectrum of the spontaneous activity peaks at zero and falls exponentially. A prediction of our analysis is that the variance of neural responses should be most strongly suppressed at frequencies matching the range over which many sensory systems operate.