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Jun Ni

Jun Ni contributes to research discovery and scholarly infrastructure.

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Published work

7 published item(s)

preprint2026arXiv

Foundation Models to Unlock Real-World Evidence from Nationwide Medical Claims

Evidence derived from large-scale real-world data (RWD) is increasingly informing regulatory evaluation and healthcare decision-making. Administrative claims provide population-scale, longitudinal records of healthcare utilization, expenditure, and detailed coding of diagnoses, procedures, and medications, yet their potential as a substrate for healthcare foundation models remains largely unexplored. Here we present ReClaim, a generative transformer trained from scratch on 43.8 billion medical events from more than 200 million enrollees in the MarketScan claims data spanning 2008-2022. ReClaim models longitudinal trajectories across diagnoses, procedures, medications, and expenditure, and was scaled to 140 million, 700 million, and 1.7 billion parameters. Across over 1,000 disease-onset prediction tasks, ReClaim achieved a mean AUC of 75.6%, substantially outperforming disease-specific LightGBM (66.3%) and the transformer-based Delphi model (69.4%), with the largest gains for rare diseases. These advantages held across retrospective and prospective evaluations and in external validation on two independent datasets. Performance improved monotonically with scale, and post-training added 13.8 percentage points over pre-training alone. Beyond disease prediction, ReClaim captured financial outcomes and improved real-world evidence (RWE) analyses: for healthcare expenditure forecasting it increased explained variance from 0.28 to 0.37 relative to LightGBM, and in a target trial emulation it reduced systematic bias by 72% on average relative to Delphi. Together, these results establish administrative claims as a scalable substrate for healthcare foundation models and show that learned representations generalize across time periods and data sources, supporting disease surveillance, expenditure forecasting, and RWE generation.

preprint2022arXiv

Energetic stability and spatial inhomogeneity in the local electronic structure of relaxed twisted trilayer graphene

We study the energetic stability and the local electronic structure of the general twisted trilayer graphene (TTG) with the top and bottom layers rotated with respect to the middle layer respectively by $θ$ and $θ&#39;$. Approximate supercells of the moiré-of-moiré superlattices with $θ$ and $θ^{\prime}$ within $1^{\circ}\sim 2^{\circ}$ are established to describe the structural and electronic properties of relaxed TTG with the periodic boundary condition. Full relaxation demonstrates that the commensurate TTG with $θ=θ^{\prime}$ has the local minimum total energy ($E_{tol}$) at a fixed $θ$, while $E_{tol}$ first reaches a local maximum and begins to drop with decreasing $θ^{\prime}$ for $θ^{\prime} < θ$. Some regions exhibit enhanced in-plane relaxation in the top and bottom layers but suppressed relaxation in the middle layer and form a hexagonal network with the moiré-of-moiré length scale. The stacking configurations with the atoms in the three layers vertically aligned at the origin of the relaxed TTG supercells at $θ$ around $1.6^{\circ}$ and $θ^{\prime}$ around $1.4^{\circ}$ have a high density of states (DOS) near the Fermi level ($E_F$), which can reach that of the mirror symmetric TTG with equal twist angles of about $1.7^{\circ}$. In contrast, some other stackings can have rather low DOS around $E_F$. The significant stacking dependence of DOS for some TTG supercells demonstrates that the local electronic structure of TTG can exhibit strong spatial inhomogeneity when the twist angles are slightly away from those of the small supercells with large variations of DOS among different stackings. Moreover, the structural relaxation of TTG plays a crucial role in the high DOS and its strong stacking dependence.

preprint2020arXiv

Autonomous Formula Racecar: Overall System Design and Experimental Validation

This paper develops and summarizes the work of building the autonomous integrated system including perception system and vehicle dynamic controller for a formula student autonomous racecar. We propose a system framework combining X-by-wired modification, perception & motion planning and vehicle dynamic control as a template of FSAC racecar which can be easily replicated. A LIDAR-vision cooperating method of detecting traffic cone which is used as track mark is proposed. Detection algorithm of the racecar also implements a precise and high rate localization method which combines the GPS-INS data and LIDAR odometry. Besides, a track map including the location and color information of the cones is built simultaneously. Finally, the system and vehicle performance on a closed loop track is tested. This paper also briefly introduces the Formula Student Autonomous Competition (FSAC).

preprint2020arXiv

Integrating global spatial features in CNN based Hyperspectral/SAR imagery classification

The land cover classification has played an important role in remote sensing because it can intelligently identify things in one huge remote sensing image to reduce the work of humans. However, a lot of classification methods are designed based on the pixel feature or limited spatial feature of the remote sensing image, which limits the classification accuracy and universality of their methods. This paper proposed a novel method to take into the information of remote sensing image, i.e., geographic latitude-longitude information. In addition, a dual-branch convolutional neural network (CNN) classification method is designed in combination with the global information to mine the pixel features of the image. Then, the features of the two neural networks are fused with another fully neural network to realize the classification of remote sensing images. Finally, two remote sensing images are used to verify the effectiveness of our method, including hyperspectral imaging (HSI) and polarimetric synthetic aperture radar (PolSAR) imagery. The result of the proposed method is superior to the traditional single-channel convolutional neural network.

preprint2020arXiv

Learning based Predictive Error Estimation and Compensator Design for Autonomous Vehicle Path Tracking

Model predictive control (MPC) is widely used for path tracking of autonomous vehicles due to its ability to handle various types of constraints. However, a considerable predictive error exists because of the error of mathematics model or the model linearization. In this paper, we propose a framework combining the MPC with a learning-based error estimator and a feedforward compensator to improve the path tracking accuracy. An extreme learning machine is implemented to estimate the model based predictive error from vehicle state feedback information. Offline training data is collected from a vehicle controlled by a model-defective regular MPC for path tracking in several working conditions, respectively. The data include vehicle state and the spatial error between the current actual position and the corresponding predictive position. According to the estimated predictive error, we then design a PID-based feedforward compensator. Simulation results via Carsim show the estimation accuracy of the predictive error and the effectiveness of the proposed framework for path tracking of an autonomous vehicle.

preprint2020arXiv

Pressure induced gap modulation and topological transitions in twisted bilayer and double bilayer graphene

We study the electronic and topological properties of fully relaxed twisted bilayer (TBG) and double bilayer (TDBG) graphene under perpendicular pressure. An approach has been proposed to obtain the equilibrium in-plane structural deformation and out-of-plane corrugation in moiré superlattices under pressure. We find that the in-plane relaxation becomes much stronger under higher pressure, while the corrugation height in each layer is maintained. The comparison between band structures of relaxed and rigid structures demonstrates that not only the gaps on the electron and hole sides ($Δ_e$ and $Δ_h$) are significantly underestimated without relaxation but also the detailed dispersions of the middle bands of rigid structures are rather different from those of relaxed systems. $Δ_e$ and $Δ_h$ in TBG reach maximum values around critical pressures with narrowest middle bands. Topological transitions occur in TDBG under pressure with the middle valence and conduction bands in one valley touching and their Chern numbers transferred to each other. The pressure can also tune the gap at the neutrality point of TDBG, which becomes closed for a pressure range and reopened under higher pressure. The behavior of electronic structure of supertlattices under pressure is sensitive to the twist angle $θ$ with the critical pressures generally increase with $θ$.

preprint2020arXiv

Symmetry breaking in the double moiré superlattices of relaxed twisted bilayer graphene on hexagonal boron nitride

We study the atomic and electronic structures of the commensurate double moiré superlattices in fully relaxed twisted bilayer graphene (TBG) nearly aligned with the hexagonal boron nitride (BN). The single-particle effective Hamiltonian ($\hat{H}^0$) taking into account the relaxation effect and the full moiré Hamiltonian introduced by BN has been built for TBG/BN. The mean-field (MF) band structures of the self-consistent Hartree-Fock (SCHF) ground states at different number ($ν$) of filled flat bands relative to the charge neutrality point (CNP) are obtained based on $\hat{H}^0$ in the plane-wave-like basis. The single-particle flat bands in TBG/BN become separated by the opened gap at CNP due to the symmetry breaking in $\hat{H}^0$. We find that the broken $C_2$ symmetry in $\hat{H}^0$ mainly originates from the intralayer inversion-asymmetric structural deformation in the graphene layer adjacent to BN, which introduces spatially non-uniform modifications of the intralayer Hamiltonian. The gapped flat bands have finite Chern numbers. For TBG/BN with the magic twist angle, the SCHF ground states with $|ν|$ = 1-3 are all insulating with narrow MF gaps. When the flat conduction bands are filled, the gap at $ν$ = 1 is smaller than that at $ν$ = 3, suggesting that the nontrivial topological properties associated with the flat Chern bands are more likely to be observed at $ν= 3$. This is similar for negative $ν$ with empty valence bands. The dependence of the electronic structure of TBG/BN on positive $ν$ is roughly consistent with recent experimental observations.