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Published work

33 published item(s)

preprint2026arXiv

QAP-Router: Tackling Qubit Routing as Dynamic Quadratic Assignment with Reinforcement Learning

Qubit routing is a fundamental problem in quantum compilation, known to be NP-hard. Its dynamic nature makes local routing decisions propagate and compound over time, making global efficient solutions challenging. Existing heuristic methods rely on local rules with limited lookahead, while recent learning-based approaches often treat routing as a generic sequential decision problem without fully exploiting its underlying structure. In this paper, we introduce QAP-Router, framing qubit routing based on a dynamic Quadratic Assignment Problem (QAP) formulation. By modeling logical interactions, or quantum gates, as flow matrices and hardware topology as a distance matrix, our approach captures the interaction-distance coupling in a unified objective, which defines the reward in the reinforcement learning environment. To further exploit this structure, the policy network employs a solution-aware Transformer backbone that encodes the interaction between the flow matrix and the distance matrix into the attention mechanism. We also integrate a lookahead mechanism that blends naturally into the QAP framework, preventing myopic decisions. Extensive experiments on 1,831 real-world quantum circuits from the MQTBench, AgentQ and QUEKO datasets show that our method substantially reduces the CNOT gate count of routed circuits by 15.7%, 30.4% and 12.1%, respectively, relative to existing industry compilers.

preprint2022arXiv

A Survey of Quantum Computing for Finance

Quantum computers are expected to surpass the computational capabilities of classical computers during this decade and have transformative impact on numerous industry sectors, particularly finance. In fact, finance is estimated to be the first industry sector to benefit from quantum computing, not only in the medium and long terms, but even in the short term. This survey paper presents a comprehensive summary of the state of the art of quantum computing for financial applications, with particular emphasis on stochastic modeling, optimization, and machine learning, describing how these solutions, adapted to work on a quantum computer, can potentially help to solve financial problems, such as derivative pricing, risk modeling, portfolio optimization, natural language processing, and fraud detection, more efficiently and accurately. We also discuss the feasibility of these algorithms on near-term quantum computers with various hardware implementations and demonstrate how they relate to a wide range of use cases in finance. We hope this article will not only serve as a reference for academic researchers and industry practitioners but also inspire new ideas for future research.

preprint2022arXiv

BEINIT: Avoiding Barren Plateaus in Variational Quantum Algorithms

Barren plateaus are a notorious problem in the optimization of variational quantum algorithms and pose a critical obstacle in the quest for more efficient quantum machine learning algorithms. Many potential reasons for barren plateaus have been identified but few solutions have been proposed to avoid them in practice. Existing solutions are mainly focused on the initialization of unitary gate parameters without taking into account the changes induced by input data. In this paper, we propose an alternative strategy which initializes the parameters of a unitary gate by drawing from a beta distribution. The hyperparameters of the beta distribution are estimated from the data. To further prevent barren plateau during training we add a novel perturbation at every gradient descent step. Taking these ideas together, we empirically show that our proposed framework significantly reduces the possibility of a complex quantum neural network getting stuck in a barren plateau.

preprint2022arXiv

Constructing Optimal Contraction Trees for Tensor Network Quantum Circuit Simulation

One of the key problems in tensor network based quantum circuit simulation is the construction of a contraction tree which minimizes the cost of the simulation, where the cost can be expressed in the number of operations as a proxy for the simulation running time. This same problem arises in a variety of application areas, such as combinatorial scientific computing, marginalization in probabilistic graphical models, and solving constraint satisfaction problems. In this paper, we reduce the computationally hard portion of this problem to one of graph linear ordering, and demonstrate how existing approaches in this area can be utilized to achieve results up to several orders of magnitude better than existing state of the art methods for the same running time. To do so, we introduce a novel polynomial time algorithm for constructing an optimal contraction tree from a given order. Furthermore, we introduce a fast and high quality linear ordering solver, and demonstrate its applicability as a heuristic for providing orderings for contraction trees. Finally, we compare our solver with competing methods for constructing contraction trees in quantum circuit simulation on a collection of randomly generated Quantum Approximate Optimization Algorithm Max Cut circuits and show that our method achieves superior results on a majority of tested quantum circuits. Reproducibility: Our source code and data are available at https://github.com/cameton/HPEC2022_ContractionTrees.

preprint2022arXiv

Layer VQE: A Variational Approach for Combinatorial Optimization on Noisy Quantum Computers

Combinatorial optimization on near-term quantum devices is a promising path to demonstrating quantum advantage. However, the capabilities of these devices are constrained by high noise or error rates. In this paper, we propose an iterative Layer VQE (L-VQE) approach, inspired by the Variational Quantum Eigensolver (VQE). We present a large-scale numerical study, simulating circuits with up to 40 qubits and 352 parameters, that demonstrates the potential of the proposed approach. We evaluate quantum optimization heuristics on the problem of detecting multiple communities in networks, for which we introduce a novel qubit-frugal formulation. We numerically compare L-VQE with Quantum Approximate Optimization Algorithm (QAOA) and demonstrate that QAOA achieves lower approximation ratios while requiring significantly deeper circuits. We show that L-VQE is more robust to finite sampling errors and has a higher chance of finding the solution as compared with standard VQE approaches. Our simulation results show that L-VQE performs well under realistic hardware noise.

preprint2022arXiv

Partitioning Dense Graphs with Hardware Accelerators

Graph partitioning is a fundamental combinatorial optimization problem that attracts a lot of attention from theoreticians and practitioners due to its broad applications. From multilevel graph partitioning to more general-purpose optimization solvers such as Gurobi and CPLEX, a wide range of approaches have been developed. Limitations of these approaches are important to study in order to break the computational optimization barriers of this problem. As we approach the limits of Moore's law, there is now a need to explore ways of solving such problems with special-purpose hardware such as quantum computers or quantum-inspired accelerators. In this work, we experiment with solving the graph partitioning on the Fujitsu Digital Annealer (a special-purpose hardware designed for solving combinatorial optimization problems) and compare it with the existing top solvers. We demonstrate limitations of existing solvers on many dense graphs as well as those of the Digital Annealer on sparse graphs which opens an avenue to hybridize these approaches.

preprint2022arXiv

Proactive Query Expansion for Streaming Data Using External Source

Query expansion is the process of reformulating the original query by adding relevant words. Choosing which terms to add in order to improve the performance of the query expansion methods or to enhance the quality of the retrieved results is an important aspect of any information retrieval system. Adding words that can positively impact the quality of the search query or are informative enough play an important role in returning or gathering relevant documents that cover a certain topic can result in improving the efficiency of the information retrieval system. Typically, query expansion techniques are used to add or substitute words to a given search query to collect relevant data. In this paper, we design and implement a pipeline of automated query expansion. We outline several tools using different methods to expand the query. Our methods depend on targeting emergent events in streaming data over time and finding the hidden topics from targeted documents using probabilistic topic models. We employ Dynamic Eigenvector Centrality to trigger the emergent events, and the Latent Dirichlet Allocation to discover the topics. Also, we use an external data source as a secondary stream to supplement the primary stream with relevant words and expand the query using the words from both primary and secondary streams. An experimental study is performed on Twitter data (primary stream) related to the events that happened during protests in Baltimore in 2015. The quality of the retrieved results was measured using a quality indicator of the streaming data: tweets count, hashtag count, and hashtag clustering.

preprint2021arXiv

CONFAIR: Configurable and Interpretable Algorithmic Fairness

The rapid growth of data in the recent years has led to the development of complex learning algorithms that are often used to make decisions in real world. While the positive impact of the algorithms has been tremendous, there is a need to mitigate any bias arising from either training samples or implicit assumptions made about the data samples. This need becomes critical when algorithms are used in automated decision making systems that can hugely impact people's lives. Many approaches have been proposed to make learning algorithms fair by detecting and mitigating bias in different stages of optimization. However, due to a lack of a universal definition of fairness, these algorithms optimize for a particular interpretation of fairness which makes them limited for real world use. Moreover, an underlying assumption that is common to all algorithms is the apparent equivalence of achieving fairness and removing bias. In other words, there is no user defined criteria that can be incorporated into the optimization procedure for producing a fair algorithm. Motivated by these shortcomings of existing methods, we propose the CONFAIR procedure that produces a fair algorithm by incorporating user constraints into the optimization procedure. Furthermore, we make the process interpretable by estimating the most predictive features from data. We demonstrate the efficacy of our approach on several real world datasets using different fairness criteria.

preprint2021arXiv

Coping with Mistreatment in Fair Algorithms

Machine learning actively impacts our everyday life in almost all endeavors and domains such as healthcare, finance, and energy. As our dependence on the machine learning increases, it is inevitable that these algorithms will be used to make decisions that will have a direct impact on the society spanning all resolutions from personal choices to world-wide policies. Hence, it is crucial to ensure that (un)intentional bias does not affect the machine learning algorithms especially when they are required to take decisions that may have unintended consequences. Algorithmic fairness techniques have found traction in the machine learning community and many methods and metrics have been proposed to ensure and evaluate fairness in algorithms and data collection. In this paper, we study the algorithmic fairness in a supervised learning setting and examine the effect of optimizing a classifier for the Equal Opportunity metric. We demonstrate that such a classifier has an increased false positive rate across sensitive groups and propose a conceptually simple method to mitigate this bias. We rigorously analyze the proposed method and evaluate it on several real world datasets demonstrating its efficacy.

preprint2020arXiv

AGATHA: Automatic Graph-mining And Transformer based Hypothesis generation Approach

Medical research is risky and expensive. Drug discovery, as an example, requires that researchers efficiently winnow thousands of potential targets to a small candidate set for more thorough evaluation. However, research groups spend significant time and money to perform the experiments necessary to determine this candidate set long before seeing intermediate results. Hypothesis generation systems address this challenge by mining the wealth of publicly available scientific information to predict plausible research directions. We present AGATHA, a deep-learning hypothesis generation system that can introduce data-driven insights earlier in the discovery process. Through a learned ranking criteria, this system quickly prioritizes plausible term-pairs among entity sets, allowing us to recommend new research directions. We massively validate our system with a temporal holdout wherein we predict connections first introduced after 2015 using data published beforehand. We additionally explore biomedical sub-domains, and demonstrate AGATHA's predictive capacity across the twenty most popular relationship types. This system achieves best-in-class performance on an established benchmark, and demonstrates high recommendation scores across subdomains. Reproducibility: All code, experimental data, and pre-trained models are available online: sybrandt.com/2020/agatha

preprint2020arXiv

FOBE and HOBE: First- and High-Order Bipartite Embeddings

Typical graph embeddings may not capture type-specific bipartite graph features that arise in such areas as recommender systems, data visualization, and drug discovery. Machine learning methods utilized in these applications would be better served with specialized embedding techniques. We propose two embeddings for bipartite graphs that decompose edges into sets of indirect relationships between node neighborhoods. When sampling higher-order relationships, we reinforce similarities through algebraic distance on graphs. We also introduce ensemble embeddings to combine both into a "best of both worlds" embedding. The proposed methods are evaluated on link prediction and recommendation tasks and compared with other state-of-the-art embeddings. While being all highly beneficial in applications, we demonstrate that none of the considered embeddings is clearly superior (in contrast to what is claimed in many papers), and discuss the trade offs present among them. Reproducibility: Our code, data sets, and results are all publicly available online at: http://sybrandt.com/2020/fobe_hobe.

preprint2020arXiv

Hypergraph Partitioning With Embeddings

Problems in scientific computing, such as distributing large sparse matrix operations, have analogous formulations as hypergraph partitioning problems. A hypergraph is a generalization of a traditional graph wherein "hyperedges" may connect any number of nodes. As a result, hypergraph partitioning is an NP-Hard problem to both solve or approximate. State-of-the-art algorithms that solve this problem follow the multilevel paradigm, which begins by iteratively "coarsening" the input hypergraph to smaller problem instances that share key structural features. Once identifying an approximate problem that is small enough to be solved directly, that solution can be interpolated and refined to the original problem. While this strategy represents an excellent trade off between quality and running time, it is sensitive to coarsening strategy. In this work we propose using graph embeddings of the initial hypergraph in order to ensure that coarsened problem instances retrain key structural features. Our approach prioritizes coarsening within self-similar regions within the input graph, and leads to significantly improved solution quality across a range of considered hypergraphs. Reproducibility: All source code, plots and experimental data are available at https://sybrandt.com/2019/partition.

preprint2020arXiv

Multilevel Combinatorial Optimization Across Quantum Architectures

Emerging quantum processors provide an opportunity to explore new approaches for solving traditional problems in the post Moore's law supercomputing era. However, the limited number of qubits makes it infeasible to tackle massive real-world datasets directly in the near future, leading to new challenges in utilizing these quantum processors for practical purposes. Hybrid quantum-classical algorithms that leverage both quantum and classical types of devices are considered as one of the main strategies to apply quantum computing to large-scale problems. In this paper, we advocate the use of multilevel frameworks for combinatorial optimization as a promising general paradigm for designing hybrid quantum-classical algorithms. In order to demonstrate this approach, we apply this method to two well-known combinatorial optimization problems, namely, the Graph Partitioning Problem, and the Community Detection Problem. We develop hybrid multilevel solvers with quantum local search on D-Wave's quantum annealer and IBM's gate-model based quantum processor. We carry out experiments on graphs that are orders of magnitudes larger than the current quantum hardware size, and we observe results comparable to state-of-the-art solvers in terms of quality of the solution.

preprint2020arXiv

Recent Advances in Scalable Network Generation

Random graph models are frequently used as a controllable and versatile data source for experimental campaigns in various research fields. Generating such data-sets at scale is a non-trivial task as it requires design decisions typically spanning multiple areas of expertise. Challenges begin with the identification of relevant domain-specific network features, continue with the question of how to compile such features into a tractable model, and culminate in algorithmic details arising while implementing the pertaining model. In the present survey, we explore crucial aspects of random graph models with known scalable generators. We begin by briefly introducing network features considered by such models, and then discuss random graphs alongside with generation algorithms. Our focus lies on modelling techniques and algorithmic primitives that have proven successful in obtaining massive graphs. We consider concepts and graph models for various domains (such as social network, infrastructure, ecology, and numerical simulations), and discuss generators for different models of computation (including shared-memory parallelism, massive-parallel GPUs, and distributed systems).

preprint2020arXiv

Unsupervised Hierarchical Graph Representation Learning by Mutual Information Maximization

Graph representation learning based on graph neural networks (GNNs) can greatly improve the performance of downstream tasks, such as node and graph classification. However, the general GNN models do not aggregate node information in a hierarchical manner, and can miss key higher-order structural features of many graphs. The hierarchical aggregation also enables the graph representations to be explainable. In addition, supervised graph representation learning requires labeled data, which is expensive and error-prone. To address these issues, we present an unsupervised graph representation learning method, Unsupervised Hierarchical Graph Representation (UHGR), which can generate hierarchical representations of graphs. Our method focuses on maximizing mutual information between "local" and high-level "global" representations, which enables us to learn the node embeddings and graph embeddings without any labeled data. To demonstrate the effectiveness of the proposed method, we perform the node and graph classification using the learned node and graph embeddings. The results show that the proposed method achieves comparable results to state-of-the-art supervised methods on several benchmarks. In addition, our visualization of hierarchical representations indicates that our method can capture meaningful and interpretable clusters.

preprint2019arXiv

Multistart Methods for Quantum Approximate Optimization

Hybrid quantum-classical algorithms such as the quantum approximate optimization algorithm (QAOA) are considered one of the most promising approaches for leveraging near-term quantum computers for practical applications. Such algorithms are often implemented in a variational form, combining classical optimization methods with a quantum machine to find parameters to maximize performance. The quality of the QAOA solution depends heavily on quality of the parameters produced by the classical optimizer. Moreover, the presence of multiple local optima in the space of parameters makes it harder for the classical optimizer. In this paper we study the use of a multistart optimization approach within a QAOA framework to improve the performance of quantum machines on important graph clustering problems. We also demonstrate that reusing the optimal parameters from similar problems can improve the performance of classical optimization methods, expanding on similar results for MAXCUT.

preprint2019arXiv

Network Community Detection On Small Quantum Computers

In recent years a number of quantum computing devices with small numbers of qubits became available. We present a hybrid quantum local search (QLS) approach that combines a classical machine and a small quantum device to solve problems of practical size. The proposed approach is applied to the network community detection problem. QLS is hardware-agnostic and easily extendable to new quantum computing devices as they become available. We demonstrate it to solve the 2-community detection problem on graphs of size up to 410 vertices using the 16-qubit IBM quantum computer and D-Wave 2000Q, and compare their performance with the optimal solutions. Our results demonstrate that QLS perform similarly in terms of quality of the solution and the number of iterations to convergence on both types of quantum computers and it is capable of achieving results comparable to state-of-the-art solvers in terms of quality of the solution including reaching the optimal solutions.

preprint2019arXiv

Relaxation-Based Coarsening for Multilevel Hypergraph Partitioning

Multilevel partitioning methods that are inspired by principles of multiscaling are the most powerful practical hypergraph partitioning solvers. Hypergraph partitioning has many applications in disciplines ranging from scientific computing to data science. In this paper we introduce the concept of algebraic distance on hypergraphs and demonstrate its use as an algorithmic component in the coarsening stage of multilevel hypergraph partitioning solvers. The algebraic distance is a vertex distance measure that extends hyperedge weights for capturing the local connectivity of vertices which is critical for hypergraph coarsening schemes. The practical effectiveness of the proposed measure and corresponding coarsening scheme is demonstrated through extensive computational experiments on a diverse set of problems. Finally, we propose a benchmark of hypergraph partitioning problems to compare the quality of other solvers.

preprint2018arXiv

Aggregative Coarsening for Multilevel Hypergraph Partitioning

Algorithms for many hypergraph problems, including partitioning, utilize multilevel frameworks to achieve a good trade-off between the performance and the quality of results. In this paper we introduce two novel aggregative coarsening schemes and incorporate them within state-of-the-art hypergraph partitioner Zoltan. Our coarsening schemes are inspired by the algebraic multigrid and stable matching approaches. We demonstrate the effectiveness of the developed schemes as a part of multilevel hypergraph partitioning framework on a wide range of problems.

preprint2016arXiv

A Multilevel Bilinear Programming Algorithm For the Vertex Separator Problem

The Vertex Separator Problem for a graph is to find the smallest collection of vertices whose removal breaks the graph into two disconnected subsets that satisfy specified size constraints. In the paper 10.1016/j.ejor.2014.05.042, the Vertex Separator Problem was formulated as a continuous (non-concave/non-convex) bilinear quadratic program. In this paper, we develop a more general continuous bilinear program which incorporates vertex weights, and which applies to the coarse graphs that are generated in a multilevel compression of the original Vertex Separator Problem. A Mountain Climbing Algorithm is used to find a stationary point of the continuous bilinear quadratic program, while second-order optimality conditions and perturbation techniques are used to escape from either a stationary point or a local maximizer. The algorithms for solving the continuous bilinear program are employed during the solution and refinement phases in a multilevel scheme. Computational results and comparisons demonstrate the advantage of the proposed algorithm.

preprint2016arXiv

Algebraic multigrid support vector machines

The support vector machine is a flexible optimization-based technique widely used for classification problems. In practice, its training part becomes computationally expensive on large-scale data sets because of such reasons as the complexity and number of iterations in parameter fitting methods, underlying optimization solvers, and nonlinearity of kernels. We introduce a fast multilevel framework for solving support vector machine models that is inspired by the algebraic multigrid. Significant improvement in the running has been achieved without any loss in the quality. The proposed technique is highly beneficial on imbalanced sets. We demonstrate computational results on publicly available and industrial data sets.

preprint2016arXiv

Detecting and Summarizing Emergent Events in Microblogs and Social Media Streams by Dynamic Centralities

Methods for detecting and summarizing emergent keywords have been extensively studied since social media and microblogging activities have started to play an important role in data analysis and decision making. We present a system for monitoring emergent keywords and summarizing a document stream based on the dynamic semantic graphs of streaming documents. We introduce the notion of dynamic eigenvector centrality for ranking emergent keywords, and present an algorithm for summarizing emergent events that is based on the minimum weight set cover. We demonstrate our system with an analysis of streaming Twitter data related to public security events.

preprint2016arXiv

Multilevel Weighted Support Vector Machine for Classification on Healthcare Data with Missing Values

This work is motivated by the needs of predictive analytics on healthcare data as represented by Electronic Medical Records. Such data is invariably problematic: noisy, with missing entries, with imbalance in classes of interests, leading to serious bias in predictive modeling. Since standard data mining methods often produce poor performance measures, we argue for development of specialized techniques of data-preprocessing and classification. In this paper, we propose a new method to simultaneously classify large datasets and reduce the effects of missing values. It is based on a multilevel framework of the cost-sensitive SVM and the expected maximization imputation method for missing values, which relies on iterated regression analyses. We compare classification results of multilevel SVM-based algorithms on public benchmark datasets with imbalanced classes and missing values as well as real data in health applications, and show that our multilevel SVM-based method produces fast, and more accurate and robust classification results.

preprint2016arXiv

Single- and Multi-level Network Sparsification by Algebraic Distance

Network sparsification methods play an important role in modern network analysis when fast estimation of computationally expensive properties (such as the diameter, centrality indices, and paths) is required. We propose a method of network sparsification that preserves a wide range of structural properties. Depending on the analysis goals, the method allows to distinguish between local and global range edges that can be filtered out during the sparsification. First we rank edges by their algebraic distances and then we sample them. We also introduce a multilevel framework for sparsification that can be used to control the sparsification process at various coarse-grained resolutions. Based primarily on the matrix-vector multiplications, our method is easily parallelized for different architectures.

preprint2015arXiv

Fast Imbalanced Classification of Healthcare Data with Missing Values

In medical domain, data features often contain missing values. This can create serious bias in the predictive modeling. Typical standard data mining methods often produce poor performance measures. In this paper, we propose a new method to simultaneously classify large datasets and reduce the effects of missing values. The proposed method is based on a multilevel framework of the cost-sensitive SVM and the expected maximization imputation method for missing values, which relies on iterated regression analyses. We compare classification results of multilevel SVM-based algorithms on public benchmark datasets with imbalanced classes and missing values as well as real data in health applications, and show that our multilevel SVM-based method produces fast, and more accurate and robust classification results.

preprint2014arXiv

Fast Multilevel Support Vector Machines

Solving different types of optimization models (including parameters fitting) for support vector machines on large-scale training data is often an expensive computational task. This paper proposes a multilevel algorithmic framework that scales efficiently to very large data sets. Instead of solving the whole training set in one optimization process, the support vectors are obtained and gradually refined at multiple levels of coarseness of the data. The proposed framework includes: (a) construction of hierarchy of large-scale data coarse representations, and (b) a local processing of updating the hyperplane throughout this hierarchy. Our multilevel framework substantially improves the computational time without loosing the quality of classifiers. The algorithms are demonstrated for both regular and weighted support vector machines. Experimental results are presented for balanced and imbalanced classification problems. Quality improvement on several imbalanced data sets has been observed.

preprint2013arXiv

A Continuous Refinement Strategy for the Multilevel Computation of Vertex Separators

The Vertex Separator Problem (VSP) on a graph is the problem of finding the smallest collection of vertices whose removal separates the graph into two disjoint subsets of roughly equal size. Recently, Hager and Hungerford [1] developed a continuous bilinear programming formulation of the VSP. In this paper, we reinforce the bilinear programming approach with a multilevel scheme for learning the structure of the graph.

preprint2012arXiv

Advanced Coarsening Schemes for Graph Partitioning

The graph partitioning problem is widely used and studied in many practical and theoretical applications. The multilevel strategies represent today one of the most effective and efficient generic frameworks for solving this problem on large-scale graphs. Most of the attention in designing the multilevel partitioning frameworks has been on the refinement phase. In this work we focus on the coarsening phase, which is responsible for creating structurally similar to the original but smaller graphs. We compare different matching- and AMG-based coarsening schemes, experiment with the algebraic distance between nodes, and demonstrate computational results on several classes of graphs that emphasize the running time and quality advantages of different coarsenings.

preprint2012arXiv

Fast Response to Infection Spread and Cyber Attacks on Large-Scale Networks

We present a strategy for designing fast methods of response to cyber attacks and infection spread on complex weighted networks. In these networks, nodes can be interpreted as primitive elements of the system, and weighted edges reflect the strength of interaction among these elements. The proposed strategy belongs to the family of multiscale methods whose goal is to approximate the system at multiple scales of coarseness and to obtain a solution of microscopic scale by combining the information from coarse scales. In recent years these methods have demonstrated their potential for solving optimization and analysis problems on large-scale networks. We consider an optimization problem that is based on the SIS epidemiological model. The objective is to detect the network nodes that have to be immunized in order to keep a low level of infection in the system.

preprint2012arXiv

Multiscale Network Generation

Networks are widely used in science and technology to represent relationships between entities, such as social or ecological links between organisms, enzymatic interactions in metabolic systems, or computer infrastructure. Statistical analyses of networks can provide critical insights into the structure, function, dynamics, and evolution of those systems. However, the structures of real-world networks are often not known completely, and they may exhibit considerable variation so that no single network is sufficiently representative of a system. In such situations, researchers may turn to proxy data from related systems, sophisticated methods for network inference, or synthetic networks. Here, we introduce a flexible method for synthesizing realistic ensembles of networks starting from a known network, through a series of mappings that coarsen and later refine the network structure by randomized editing. The method, MUSKETEER, preserves structural properties with minimal bias, including unknown or unspecified features, while introducing realistic variability at multiple scales. Using examples from several domains, we show that MUSKETEER produces the intended stochasticity while achieving greater fidelity across a suite of network properties than do other commonly used network generation algorithms.

preprint2010arXiv

Multiscale approach for the network compression-friendly ordering

We present a fast multiscale approach for the network minimum logarithmic arrangement problem. This type of arrangement plays an important role in a network compression and fast node/link access operations. The algorithm is of linear complexity and exhibits good scalability which makes it practical and attractive for using on large-scale instances. Its effectiveness is demonstrated on a large set of real-life networks. These networks with corresponding best-known minimization results are suggested as an open benchmark for a research community to evaluate new methods for this problem.

preprint2010arXiv

Relaxation-based coarsening and multiscale graph organization

In this paper we generalize and improve the multiscale organization of graphs by introducing a new measure that quantifies the "closeness" between two nodes. The calculation of the measure is linear in the number of edges in the graph and involves just a small number of relaxation sweeps. A similar notion of distance is then calculated and used at each coarser level. We demonstrate the use of this measure in multiscale methods for several important combinatorial optimization problems and discuss the multiscale graph organization.