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Published work

22 published item(s)

preprint2026arXiv

Adversarial Samples Are Not Created Equal

Over the past decade, numerous theories have been proposed to explain the widespread vulnerability of deep neural networks to adversarial evasion attacks. Among these, the theory of non-robust features proposed by Ilyas et al. has been widely accepted, showing that brittle but predictive features of the data distribution can be directly exploited by attackers. However, this theory overlooks adversarial samples that do not directly utilize these features. In this work, we advocate that these two kinds of samples - those which use use brittle but predictive features and those that do not - comprise two types of adversarial weaknesses and should be differentiated when evaluating adversarial robustness. For this purpose, we propose an ensemble-based metric to measure the manipulation of non-robust features by adversarial perturbations and use this metric to analyze the makeup of adversarial samples generated by attackers. This new perspective also allows us to re-examine multiple phenomena, including the impact of sharpness-aware minimization on adversarial robustness and the robustness gap observed between adversarially training and standard training on robust datasets.

preprint2026arXiv

Bayesian Meta-Analyses Could Be More: A Case Study in Trial of Labor After a Cesarean-section Outcomes and Complications

The meta-analysis's utility is dependent on previous studies having accurately captured the variables of interest, but in medical studies, a key decision variable that impacts a physician's decisions was not captured. This results in an unknown effect size and unreliable conclusions. A Bayesian approach may allow analysis to determine if the claim of a positive effect is still warranted, and we build a Bayesian approach to this common medical scenario. To demonstrate its utility, we assist professional OBGYNs in evaluating Trial of Labor After a Cesarean-section (TOLAC) situations where few interventions are available for patients and find the support needed for physicians to advance patient care.

preprint2026arXiv

Learning to Segment using Summary Statistics and Weak Supervision

Medical experts often manually segment images to obtain diagnostic statistics and discard the resulting annotations. We aim to train segmentation models to alleviate this burden, but constrained to the retained summary statistics (e.g., the area of the annotated region). Empirical results suggest that statistics alone are insufficient for this task, but adding weak information in the form of a few pixels within the area of interest significantly improves performance. We use a novel loss function that combines terms for image reconstruction quality, matching to summary statistics, and overlap between the predicted foreground and the weak supervisory signal. Experiments on standard image, ultrasound (breast cancer), and Computed Tomography (CT) scan (kidney tumors) data demonstrate the utility and potential of the approach.

preprint2026arXiv

McNdroid: A Longitudinal Multimodal Benchmark for Robust Drift Detection in Android Malware

Machine learning (ML) in real-world systems must contend with concept drift, adversarial actors, and a spectrum of potential features with varying costs and benefits. Malware naturally exhibits all of these complexities, but for the same reason, it is challenging to curate and organize data to study these factors. We present McNdroid, to our knowledge the largest longitudinal multimodal Android malware benchmark for malware detection and drift analysis. McNdroid spans 2013--2025, excluding 2015, and represents each application with three aligned modalities--static features from manifests and smali code, dynamic behavioral features from sandbox execution, and graph-based features from function-call graphs. Using temporally separated splits, we evaluate standard ML and deep-learning detectors across increasing train--test time gaps. Results show clear temporal degradation, while multimodal fusion outperforms the best single modality across long-term temporal gaps. Cross-modal agreement also declines over time, suggesting that drift affects both individual feature spaces and the consistency among modalities. We further analyze modality-specific drift, malware-family evolution, and temporal changes in model explanations. We publicly release McNdroid, benchmark splits, and code to support reproducible research on temporal generalization and robust multimodal learning in security-critical, non-stationary settings.

preprint2023arXiv

A Coreset Learning Reality Check

Subsampling algorithms are a natural approach to reduce data size before fitting models on massive datasets. In recent years, several works have proposed methods for subsampling rows from a data matrix while maintaining relevant information for classification. While these works are supported by theory and limited experiments, to date there has not been a comprehensive evaluation of these methods. In our work, we directly compare multiple methods for logistic regression drawn from the coreset and optimal subsampling literature and discover inconsistencies in their effectiveness. In many cases, methods do not outperform simple uniform subsampling.

preprint2023arXiv

A General Framework for Auditing Differentially Private Machine Learning

We present a framework to statistically audit the privacy guarantee conferred by a differentially private machine learner in practice. While previous works have taken steps toward evaluating privacy loss through poisoning attacks or membership inference, they have been tailored to specific models or have demonstrated low statistical power. Our work develops a general methodology to empirically evaluate the privacy of differentially private machine learning implementations, combining improved privacy search and verification methods with a toolkit of influence-based poisoning attacks. We demonstrate significantly improved auditing power over previous approaches on a variety of models including logistic regression, Naive Bayes, and random forest. Our method can be used to detect privacy violations due to implementation errors or misuse. When violations are not present, it can aid in understanding the amount of information that can be leaked from a given dataset, algorithm, and privacy specification.

preprint2022arXiv

A Siren Song of Open Source Reproducibility

As reproducibility becomes a greater concern, conferences have largely converged to a strategy of asking reviewers to indicate whether code was attached to a submission. This is part of a larger trend of taking action based on assumed ideals, without studying if those actions will yield the desired outcome. Our argument is that this focus on code for replication is misguided if we want to improve the state of reproducible research. This focus can be harmful -- we should not force code to be submitted. There is a lack of evidence for effective actions taken by conferences to encourage and reward reproducibility. We argue that venues must take more action to advance reproducible machine learning research today.

preprint2022arXiv

Continuously Generalized Ordinal Regression for Linear and Deep Models

Ordinal regression is a classification task where classes have an order and prediction error increases the further the predicted class is from the true class. The standard approach for modeling ordinal data involves fitting parallel separating hyperplanes that optimize a certain loss function. This assumption offers sample efficient learning via inductive bias, but is often too restrictive in real-world datasets where features may have varying effects across different categories. Allowing class-specific hyperplane slopes creates generalized logistic ordinal regression, increasing the flexibility of the model at a cost to sample efficiency. We explore an extension of the generalized model to the all-thresholds logistic loss and propose a regularization approach that interpolates between these two extremes. Our method, which we term continuously generalized ordinal logistic, significantly outperforms the standard ordinal logistic model over a thorough set of ordinal regression benchmark datasets. We further extend this method to deep learning and show that it achieves competitive or lower prediction error compared to previous models over a range of datasets and modalities. Furthermore, two primary alternative models for deep learning ordinal regression are shown to be special cases of our framework.

preprint2022arXiv

Does the Market of Citations Reward Reproducible Work?

The field of bibliometrics, studying citations and behavior, is critical to the discussion of reproducibility. Citations are one of the primary incentive and reward systems for academic work, and so we desire to know if this incentive rewards reproducible work. Yet to the best of our knowledge, only one work has attempted to look at this combined space, concluding that non-reproducible work is more highly cited. We show that answering this question is more challenging than first proposed, and subtle issues can inhibit a robust conclusion. To make inferences with more robust behavior, we propose a hierarchical Bayesian model that incorporates the citation rate over time, rather than the total number of citations after a fixed amount of time. In doing so we show that, under current evidence the answer is more likely that certain fields of study such as Medicine and Machine Learning (ML) do correlate reproducible works with more citations, but other fields appear to have no relationship. Further, we find that making code available and thoroughly referencing prior works appear to also positively correlate with increased citations. Our code and data can be found at https://github.com/EdwardRaff/ReproducibleCitations .

preprint2022arXiv

Fooling MOSS Detection with Pretrained Language Models

As artificial intelligence (AI) technologies become increasingly powerful and prominent in society, their misuse is a growing concern. In educational settings, AI technologies could be used by students to cheat on assignments and exams. In this paper we explore whether transformers can be used to solve introductory level programming assignments while bypassing commonly used AI tools to detect similarities between pieces of software. We find that a student using GPT-J [Wang and Komatsuzaki, 2021] can complete introductory level programming assignments without triggering suspicion from MOSS [Aiken, 2000], a widely used software similarity and plagiarism detection tool. This holds despite the fact that GPT-J was not trained on the problems in question and is not provided with any examples to work from. We further find that the code written by GPT-J is diverse in structure, lacking any particular tells that future plagiarism detection techniques may use to try to identify algorithmically generated code. We conclude with a discussion of the ethical and educational implications of large language models and directions for future research.

preprint2022arXiv

GPU Semiring Primitives for Sparse Neighborhood Methods

High-performance primitives for mathematical operations on sparse vectors must deal with the challenges of skewed degree distributions and limits on memory consumption that are typically not issues in dense operations. We demonstrate that a sparse semiring primitive can be flexible enough to support a wide range of critical distance measures while maintaining performance and memory efficiency on the GPU. We further show that this primitive is a foundational component for enabling many neighborhood-based information retrieval and machine learning algorithms to accept sparse input. To our knowledge, this is the first work aiming to unify the computation of several critical distance measures on the GPU under a single flexible design paradigm and we hope that it provides a good baseline for future research in this area. Our implementation is fully open source and publicly available as part of the RAFT library of GPU-accelerated machine learning primitives (https://github.com/rapidsai/raft).

preprint2022arXiv

Improving Out-of-Distribution Detection via Epistemic Uncertainty Adversarial Training

The quantification of uncertainty is important for the adoption of machine learning, especially to reject out-of-distribution (OOD) data back to human experts for review. Yet progress has been slow, as a balance must be struck between computational efficiency and the quality of uncertainty estimates. For this reason many use deep ensembles of neural networks or Monte Carlo dropout for reasonable uncertainty estimates at relatively minimal compute and memory. Surprisingly, when we focus on the real-world applicable constraint of $\leq 1\%$ false positive rate (FPR), prior methods fail to reliably detect OOD samples as such. Notably, even Gaussian random noise fails to trigger these popular OOD techniques. We help to alleviate this problem by devising a simple adversarial training scheme that incorporates an attack of the epistemic uncertainty predicted by the dropout ensemble. We demonstrate this method improves OOD detection performance on standard data (i.e., not adversarially crafted), and improves the standardized partial AUC from near-random guessing performance to $\geq 0.75$.

preprint2022arXiv

Marvolo: Programmatic Data Augmentation for Practical ML-Driven Malware Detection

Data augmentation has been rare in the cyber security domain due to technical difficulties in altering data in a manner that is semantically consistent with the original data. This shortfall is particularly onerous given the unique difficulty of acquiring benign and malicious training data that runs into copyright restrictions, and that institutions like banks and governments receive targeted malware that will never exist in large quantities. We present MARVOLO, a binary mutator that programmatically grows malware (and benign) datasets in a manner that boosts the accuracy of ML-driven malware detectors. MARVOLO employs semantics-preserving code transformations that mimic the alterations that malware authors and defensive benign developers routinely make in practice , allowing us to generate meaningful augmented data. Crucially, semantics-preserving transformations also enable MARVOLO to safely propagate labels from original to newly-generated data samples without mandating expensive reverse engineering of binaries. Further, MARVOLO embeds several key optimizations that keep costs low for practitioners by maximizing the density of diverse data samples generated within a given time (or resource) budget. Experiments using wide-ranging commercial malware datasets and a recent ML-driven malware detector show that MARVOLO boosts accuracies by up to 5%, while operating on only a small fraction (15%) of the potential input binaries.

preprint2022arXiv

Out of Distribution Data Detection Using Dropout Bayesian Neural Networks

We explore the utility of information contained within a dropout based Bayesian neural network (BNN) for the task of detecting out of distribution (OOD) data. We first show how previous attempts to leverage the randomized embeddings induced by the intermediate layers of a dropout BNN can fail due to the distance metric used. We introduce an alternative approach to measuring embedding uncertainty, justify its use theoretically, and demonstrate how incorporating embedding uncertainty improves OOD data identification across three tasks: image classification, language classification, and malware detection.

preprint2022arXiv

Proceedings of the Artificial Intelligence for Cyber Security (AICS) Workshop at AAAI 2022

The workshop will focus on the application of AI to problems in cyber security. Cyber systems generate large volumes of data, utilizing this effectively is beyond human capabilities. Additionally, adversaries continue to develop new attacks. Hence, AI methods are required to understand and protect the cyber domain. These challenges are widely studied in enterprise networks, but there are many gaps in research and practice as well as novel problems in other domains. In general, AI techniques are still not widely adopted in the real world. Reasons include: (1) a lack of certification of AI for security, (2) a lack of formal study of the implications of practical constraints (e.g., power, memory, storage) for AI systems in the cyber domain, (3) known vulnerabilities such as evasion, poisoning attacks, (4) lack of meaningful explanations for security analysts, and (5) lack of analyst trust in AI solutions. There is a need for the research community to develop novel solutions for these practical issues.

preprint2022arXiv

VQGAN-CLIP: Open Domain Image Generation and Editing with Natural Language Guidance

Generating and editing images from open domain text prompts is a challenging task that heretofore has required expensive and specially trained models. We demonstrate a novel methodology for both tasks which is capable of producing images of high visual quality from text prompts of significant semantic complexity without any training by using a multimodal encoder to guide image generations. We demonstrate on a variety of tasks how using CLIP [37] to guide VQGAN [11] produces higher visual quality outputs than prior, less flexible approaches like DALL-E [38], GLIDE [33] and Open-Edit [24], despite not being trained for the tasks presented. Our code is available in a public repository.

preprint2021arXiv

Accounting for Variance in Machine Learning Benchmarks

Strong empirical evidence that one machine-learning algorithm A outperforms another one B ideally calls for multiple trials optimizing the learning pipeline over sources of variation such as data sampling, data augmentation, parameter initialization, and hyperparameters choices. This is prohibitively expensive, and corners are cut to reach conclusions. We model the whole benchmarking process, revealing that variance due to data sampling, parameter initialization and hyperparameter choice impact markedly the results. We analyze the predominant comparison methods used today in the light of this variance. We show a counter-intuitive result that adding more sources of variation to an imperfect estimator approaches better the ideal estimator at a 51 times reduction in compute cost. Building on these results, we study the error rate of detecting improvements, on five different deep-learning tasks/architectures. This study leads us to propose recommendations for performance comparisons.

preprint2021arXiv

Rank-1 Similarity Matrix Decomposition For Modeling Changes in Antivirus Consensus Through Time

Although groups of strongly correlated antivirus engines are known to exist, at present there is limited understanding of how or why these correlations came to be. Using a corpus of 25 million VirusTotal reports representing over a decade of antivirus scan data, we challenge prevailing wisdom that these correlations primarily originate from "first-order" interactions such as antivirus vendors copying the labels of leading vendors. We introduce the Temporal Rank-1 Similarity Matrix decomposition (R1SM-T) in order to investigate the origins of these correlations and to model how consensus amongst antivirus engines changes over time. We reveal that first-order interactions do not explain as much behavior in antivirus correlation as previously thought, and that the relationships between antivirus engines are highly volatile. We make recommendations on items in need of future study and consideration based on our findings.

preprint2020arXiv

Automatic Yara Rule Generation Using Biclustering

Yara rules are a ubiquitous tool among cybersecurity practitioners and analysts. Developing high-quality Yara rules to detect a malware family of interest can be labor- and time-intensive, even for expert users. Few tools exist and relatively little work has been done on how to automate the generation of Yara rules for specific families. In this paper, we leverage large n-grams ($n \geq 8$) combined with a new biclustering algorithm to construct simple Yara rules more effectively than currently available software. Our method, AutoYara, is fast, allowing for deployment on low-resource equipment for teams that deploy to remote networks. Our results demonstrate that AutoYara can help reduce analyst workload by producing rules with useful true-positive rates while maintaining low false-positive rates, sometimes matching or even outperforming human analysts. In addition, real-world testing by malware analysts indicates AutoYara could reduce analyst time spent constructing Yara rules by 44-86%, allowing them to spend their time on the more advanced malware that current tools can't handle. Code will be made available at https://github.com/NeuromorphicComputationResearchProgram .

preprint2020arXiv

COVID-19 Kaggle Literature Organization

The world has faced the devastating outbreak of Severe Acute Respiratory Syndrome Coronavirus-2 (SARS-CoV-2), or COVID-19, in 2020. Research in the subject matter was fast-tracked to such a point that scientists were struggling to keep up with new findings. With this increase in the scientific literature, there arose a need for organizing those documents. We describe an approach to organize and visualize the scientific literature on or related to COVID-19 using machine learning techniques so that papers on similar topics are grouped together. By doing so, the navigation of topics and related papers is simplified. We implemented this approach using the widely recognized CORD-19 dataset to present a publicly available proof of concept.

preprint2020arXiv

Practical Cross-modal Manifold Alignment for Grounded Language

We propose a cross-modality manifold alignment procedure that leverages triplet loss to jointly learn consistent, multi-modal embeddings of language-based concepts of real-world items. Our approach learns these embeddings by sampling triples of anchor, positive, and negative data points from RGB-depth images and their natural language descriptions. We show that our approach can benefit from, but does not require, post-processing steps such as Procrustes analysis, in contrast to some of our baselines which require it for reasonable performance. We demonstrate the effectiveness of our approach on two datasets commonly used to develop robotic-based grounded language learning systems, where our approach outperforms four baselines, including a state-of-the-art approach, across five evaluation metrics.

preprint2019arXiv

A New Burrows Wheeler Transform Markov Distance

Prior work inspired by compression algorithms has described how the Burrows Wheeler Transform can be used to create a distance measure for bioinformatics problems. We describe issues with this approach that were not widely known, and introduce our new Burrows Wheeler Markov Distance (BWMD) as an alternative. The BWMD avoids the shortcomings of earlier efforts, and allows us to tackle problems in variable length DNA sequence clustering. BWMD is also more adaptable to other domains, which we demonstrate on malware classification tasks. Unlike other compression-based distance metrics known to us, BWMD works by embedding sequences into a fixed-length feature vector. This allows us to provide significantly improved clustering performance on larger malware corpora, a weakness of prior methods.