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Neurosciences and 6G: Lessons from and Needs of Communicative Brains

This paper presents the first comprehensive tutorial on a promising research field located at the frontier of two well-established domains: Neurosciences and wireless communications, motivated by the ongoing efforts to define how the sixth generation of mobile networks (6G) will be. In particular, this tutorial first provides a novel integrative approach that bridges the gap between these two, seemingly disparate fields. Then, we present the state-of-the-art and key challenges of these two topics. In particular, we propose a novel systematization that divides the contributions into two groups, one focused on what neurosciences will offer to 6G in terms of new applications and systems architecture (Neurosciences for Wireless), and the other focused on how wireless communication theory and 6G systems can provide new ways to study the brain (Wireless for Neurosciences). For the first group, we concretely explain how current scientific understanding of the brain would enable new application for 6G within the context of a new type of service that we dub braintype communications and that has more stringent requirements than human- and machine-type communication. In this regard, we expose

An overview of open source Deep Learning-based libraries for Neuroscience

In recent years, deep learning revolutionized machine learning and its applications, producing results comparable to human experts in several domains, including neuroscience. Each year, hundreds of scientific publications present applications of deep neural networks for biomedical data analysis. Due to the fast growth of the domain, it could be a complicated and extremely time-consuming task for worldwide researchers to have a clear perspective of the most recent and advanced software libraries. This work contributes to clarify the current situation in the domain, outlining the most useful libraries that implement and facilitate deep learning application to neuroscience, allowing scientists to identify the most suitable options for their research or clinical projects. This paper summarizes the main developments in Deep Learning and their relevance to Neuroscience; it then reviews neuroinformatic toolboxes and libraries, collected from the literature and from specific hubs of software projects oriented to neuroscience research. The selected tools are presented in tables detailing key features grouped by domain of application (e.g. data type, neuroscience area, task), model engineering (e.g. programming language, model customization) and technological aspect (e.g. interface, code source). The results show that, among a high number of available software tools, several libraries are standing out in terms of functionalities for neuroscience applications. The aggregation and discussion of this information can help the neuroscience community to devolop their research projects more efficiently and quickly, both by means of readily available tools, and by knowing which modules may be improved, connected or added.

preprint2007arXiv

An analysis of the abstracts presented at the annual meetings of the Society for Neuroscience from 2001 to 2006

We extracted and processed abstract data from the SFN annual meeting abstracts during the period 2001-2006, using techniques and software from natural language processing, database management, and data visualization and analysis. An important first step in the process was the application of data cleaning and disambiguation methods to construct a unified database, since the data were too noisy to be of full utility in the raw form initially available. The resulting co-author graph in 2006, for example, had 39,645 nodes (with an estimated 6% error rate in our disambiguation of similar author names) and 13,979 abstracts, with an average of 1.5 abstracts per author, 4.3 authors per abstract, and 5.96 collaborators per author (including all authors on shared abstracts). Recent work in related areas has focused on reputational indices such as highly cited papers or scientists and journal impact factors, and to a lesser extent on creating visual maps of the knowledge space. In contrast, there has been relatively less work on the demographics and community structure, the dynamics of the field over time to examine major research trends and the structure of the sources of research funding. I

preprint2026arXiv

Neuroscience-inspired Staged Representation Learning with Disentangled Coarse- and Fine-Grained Semantics for EEG Visual Decoding

Decoding visual information from electroencephalography (EEG) signals remains a fundamental challenge in brain-computer interfaces and medical rehabilitation. Existing EEG visual decoding methods mainly focus on learning a single global EEG embedding for cross-modal alignment, but they largely overlook the staged and hierarchical characteristics of human visual processing. To address this limitation, we propose a neuroscience-inspired staged representation learning framework that reformulates EEG visual decoding as a stage-specific representation decomposition problem. The proposed framework organizes EEG representation learning into three complementary phases: low-level visual representation learning, high-level semantic representation learning, and integrative information fusion. To strengthen semantic modeling, we further introduce a multimodal dual-level semantic learning mechanism that separates coarse label-level semantics from fine image-level visual-semantic information. In addition, semantic latent channels are introduced as computational representation channels generated from observed visual EEG signals, expanding the channel-level semantic representation space for structured semantic abstraction and cross-modal alignment. Extensive experiments on the THINGS-EEG benchmark demonstrate that the proposed method achieves superior performance under subject-dependent zero-shot evaluation and improved exact retrieval under subject-independent zero-shot evaluation. Additional analyses, including layer-wise retrieval, temporal accumulation, expanded multi-image retrieval, and ablation studies, further support the effectiveness of staged decomposition and structured semantic modeling. These results suggest that explicitly modeling staged perceptual, semantic, and integrative representations provides an effective neuroscience-inspired framework for EEG-based visual decoding.

Recommendations for repositories and scientific gateways from a neuroscience perspective

Digital services such as repositories and science gateways have become key resources for the neuroscience community, but users often have a hard time orienting themselves in the service landscape to find the best fit for their particular needs. INCF (International Neuroinformatics Coordinating Facility) has developed a set of recommendations and associated criteria for choosing or setting up and running a repository or scientific gateway, intended for the neuroscience community, with a FAIR neuroscience perspective. These recommendations have neurosciences as their primary use case but are often general. Considering the perspectives of researchers and providers of repositories as well as scientific gateways, the recommendations harmonize and complement existing work on criteria for repositories and best practices. The recommendations cover a range of important areas including accessibility, licensing, community responsibility and technical and financial sustainability of a service.

preprint2026arXiv

Neuroscience-Inspired Analyses of Visual Interestingness in Multimodal Transformers

Human attention is the gateway to conscious perception, memory and decision-making. However, its role in modern transformer models remains largely unexplored. As these systems increasingly influence what people see, prefer and buy, the question arises as to whether they encode principles of human interest or merely exploit large-scale correlations. Addressing this issue is crucial for understanding cognition and ensuring the responsible use of AI in communication and marketing. In order to address this issue, the concept of visual interest was examined within the multimodal vision-language-model Qwen3-VL-8B, using a pre-defined Common Interestingness (CI) score derived from large-scale human engagement data on the photo-sharing platform Flickr. Here, we analyzed internal representations across vision and language components using methods from the neurosciences. Our analyses revealed that CI information is linearly decodable from final-layer embeddings, indicating that it is aligned with human-derived measures of visual interestingness. Dimensionality reduction and Generalized Discrimination Value (GDV) analyses demonstrate that CI-related hidden representations emerge in intermediate vision transformer layers and becomes progressively more distinguishable across language model layers. Concept vectors derived using geometric, probe, and Sparse Auto-Encoder based methods converge in higher layers, as confirmed by representational similarity analysis. This indicates a robust and structured encoding of visual interestingness without explicit supervision. Future work will seek to identify shared computational principles linking human brain dynamics and transformer architectures, with the ultimate goal of uncovering the organizing mechanisms that give rise to attention and interest in both biological and artificial systems.

An embedded system for real-time feedback neuroscience experiments

A complete data acquisition and signal output control system for synchronous stimuli generation, geared towards in vivo neuroscience experiments, was developed using the Terasic DE2i-150 board. All emotions and thoughts are an emergent property of the chemical and electrical activity of neurons. Most of these cells are regarded as excitable cells (spiking neurons), which produce temporally localized electric patterns (spikes). Researchers usually consider that only the instant of occurrence (timestamp) of these spikes encodes information. Registering neural activity evoked by stimuli demands timing determinism and data storage capabilities that cannot be met without dedicated hardware and a hard real-time operational system (RTOS). Indeed, research in neuroscience usually requires dedicated electronic instrumentation for studies in neural coding, brain machine interfaces and closed loop in vivo or in vitro experiments. We developed a complete embedded system solution consisting of a hardware/software co-design with the Intel Atom processor running a free RTOS and a FPGA communicating via a PCIe-to-Avalon bridge. Our system is capable of registering input event timestamps with 1μs p

Detecting and Tracking The Real-time Hot Topics: A Study on Computational Neuroscience

In this study, following the idea of our previous paper (Wang, et al., 2013a), we improve the method to detect and track hot topics in a specific field by using the real-time article usage data. With the "usage count" data provided by Web of Science, we take the field of computational neuroscience as an example to make analysis. About 10 thousand articles in the field of Computational Neuroscience are queried in Web of Science, when the records, including the usage count data of each paper, have been harvested and updated weekly from October 19, 2015 to March 21, 2016. The hot topics are defined by the most frequently used keywords aggregated from the articles. The analysis reveals that hot topics in Computational Neuroscience are related to the key technologies, like "fmri", "eeg", "erp", etc. Furthermore, using the weekly updated data, we track the dynamical changes of the topics. The characteristic of immediacy of usage data makes it possible to track the "heat" of hot topics timely and dynamically.

Present and future frameworks of theoretical neuroscience: outcomes of a community discussion

We organized a workshop on the "Present and Future Frameworks of Theoretical Neuroscience", with the support of the National Science Foundation. The objective was to identify the challenges and strategies that this field will need to tackle in order to incorporate vast and multi-scale streams of experimental data from the technologies developed by the BRAIN initiative. The participants, divided in workgroups, identified five key areas that, while not exhaustive, cover multiple aspects of current challenges needed to be developed: Dynamics-statistics; multi-scale integration; coding; brain-body integration; and structure of neuroscience theories. While each area is different, there were coincidences on finding theoretical paths to incorporate biophysics, energetics, and ethology with more abstract coding and computational approaches. Each workgroup has continued to work after the meeting to develop the ideas seeded there, which are started to being published. Here, we provide a perspective of the discussions of each workgroup that point to building on the present foundations of theoretical neuroscience and extend them by incorporating multi-scale information with the objecti

The OpenPicoAmp : an open-source planar lipid bilayer amplifier for hands-on learning of neuroscience

Neuroscience education can be promoted by the availability of low cost and engaging teaching materials. To address this issue, we developed an open-source lipid bilayer amplifier, the OpenPicoAmp, which is appropriate for use in introductory courses in biophysics or neurosciences dealing with the electrical properties of the cell membrane. The amplifier is designed using the common lithographic printed circuit board fabrication process and off-the-shelf electronic components. In addition, we propose a specific design for experimental chambers allowing the insertion of a commercially available polytetrafluoroethylene film. This experimental setup can be used in simple experiments in which students monitor the bilayer formation by capacitance measurement and record unitary currents produced by ionic channels like gramicidin A. Used in combination with a low-cost data acquisition board this system provides a complete solution for hands-on lessons, therefore improving the effectiveness in teaching basic neurosciences or biophysics.

preprint2021arXiv

Neuroscience-Inspired Algorithms for the Predictive Maintenance of Manufacturing Systems

If machine failures can be detected preemptively, then maintenance and repairs can be performed more efficiently, reducing production costs. Many machine learning techniques for performing early failure detection using vibration data have been proposed; however, these methods are often power and data-hungry, susceptible to noise, and require large amounts of data preprocessing. Also, training is usually only performed once before inference, so they do not learn and adapt as the machine ages. Thus, we propose a method of performing online, real-time anomaly detection for predictive maintenance using Hierarchical Temporal Memory (HTM). Inspired by the human neocortex, HTMs learn and adapt continuously and are robust to noise. Using the Numenta Anomaly Benchmark, we empirically demonstrate that our approach outperforms state-of-the-art algorithms at preemptively detecting real-world cases of bearing failures and simulated 3D printer failures. Our approach achieves an average score of 64.71, surpassing state-of-the-art deep-learning (49.38) and statistical (61.06) methods.

BluePyOpt: Leveraging open source software and cloud infrastructure to optimise model parameters in neuroscience

At many scales in neuroscience, appropriate mathematical models take the form of complex dynamical systems. Parametrising such models to conform to the multitude of available experimental constraints is a global nonlinear optimisation problem with a complex fitness landscape, requiring numerical techniques to find suitable approximate solutions. Stochastic optimisation approaches, such as evolutionary algorithms, have been shown to be effective, but often the setting up of such optimisations and the choice of a specific search algorithm and its parameters is non-trivial, requiring domain-specific expertise. Here we describe BluePyOpt, a Python package targeted at the broad neuroscience community to simplify this task. BluePyOpt is an extensible framework for data-driven model parameter optimisation that wraps and standardises several existing open-source tools. It simplifies the task of creating and sharing these optimisations, and the associated techniques and knowledge. This is achieved by abstracting the optimisation and evaluation tasks into various reusable and flexible discrete elements according to established best-practices. Further, BluePyOpt provides methods for setting u

The Future of Data Analysis in the Neurosciences

Neuroscience is undergoing faster changes than ever before. Over 100 years our field qualitatively described and invasively manipulated single or few organisms to gain anatomical, physiological, and pharmacological insights. In the last 10 years neuroscience spawned quantitative big-sample datasets on microanatomy, synaptic connections, optogenetic brain-behavior assays, and high-level cognition. While growing data availability and information granularity have been amply discussed, we direct attention to a routinely neglected question: How will the unprecedented data richness shape data analysis practices? Statistical reasoning is becoming more central to distill neurobiological knowledge from healthy and pathological brain recordings. We believe that large-scale data analysis will use more models that are non-parametric, generative, mixing frequentist and Bayesian aspects, and grounded in different statistical inferences.

Towards an integration of deep learning and neuroscience

Neuroscience has focused on the detailed implementation of computation, studying neural codes, dynamics and circuits. In machine learning, however, artificial neural networks tend to eschew precisely designed codes, dynamics or circuits in favor of brute force optimization of a cost function, often using simple and relatively uniform initial architectures. Two recent developments have emerged within machine learning that create an opportunity to connect these seemingly divergent perspectives. First, structured architectures are used, including dedicated systems for attention, recursion and various forms of short- and long-term memory storage. Second, cost functions and training procedures have become more complex and are varied across layers and over time. Here we think about the brain in terms of these ideas. We hypothesize that (1) the brain optimizes cost functions, (2) these cost functions are diverse and differ across brain locations and over development, and (3) optimization operates within a pre-structured architecture matched to the computational problems posed by behavior. Such a heterogeneously optimized system, enabled by a series of interacting cost functions, serves to

preprint2013arXiv

A primer on information theory, with applications to neuroscience

Given the constant rise in quantity and quality of data obtained from neural systems on many scales ranging from molecular to systems', information-theoretic analyses became increasingly necessary during the past few decades in the neurosciences. Such analyses can provide deep insights into the functionality of such systems, as well as a rigid mathematical theory and quantitative measures of information processing in both healthy and diseased states of neural systems. This chapter will present a short introduction to the fundamentals of information theory, especially suited for people having a less firm background in mathematics and probability theory. To begin, the fundamentals of probability theory such as the notion of probability, probability distributions, and random variables will be reviewed. Then, the concepts of information and entropy (in the sense of Shannon), mutual information, and transfer entropy (sometimes also referred to as conditional mutual information) will be outlined. As these quantities cannot be computed exactly from measured data in practice, estimation techniques for information-theoretic quantities will be presented. The chapter will conclude with th

preprint2018arXiv

Network neuroscience for optimizing brain-computer interfaces

Human-machine interactions are being increasingly explored to create alternative ways of communication and to improve our daily life. Based on a classification of the user's intention from the user's underlying neural activity, brain-computer interfaces (BCIs) allow direct interactions with the external environment while bypassing the traditional effector of the musculoskeletal system. Despite the enormous potential of BCIs, there are still a number of challenges that limit their societal impact, ranging from the correct decoding of a human's thoughts, to the application of effective learning strategies. Despite several important engineering advances, the basic neuroscience behind these challenges remains poorly explored. Indeed, BCIs involve complex dynamic changes related to neural plasticity at a diverse range of spatiotemporal scales. One promising antidote to this complexity lies in network science, which provides a natural language in which to model the organizational principles of brain architecture and function as manifest in its interconnectivity. Here, we briefly review the main limitations currently affecting BCIs, and we offer our perspective on how they can

Data Processing of Functional Optical Microscopy for Neuroscience

Functional optical imaging in neuroscience is rapidly growing with the development of new optical systems and fluorescence indicators. To realize the potential of these massive spatiotemporal datasets for relating neuronal activity to behavior and stimuli and uncovering local circuits in the brain, accurate automated processing is increasingly essential. In this review, we cover recent computational developments in the full data processing pipeline of functional optical microscopy for neuroscience data and discuss ongoing and emerging challenges.

Mathematical frameworks for oscillatory network dynamics in neuroscience

The tools of weakly coupled phase oscillator theory have had a profound impact on the neuroscience community, providing insight into a variety of network behaviours ranging from central pattern generation to synchronisation, as well as predicting novel network states such as chimeras. However, there are many instances when this theory is expected to break down, say in the presence of strong coupling, or must be carefully interpreted, as in the presence of stochastic forcing. There are also surprises in the dynamical complexity of the attractors that can robustly appear - for example, heteroclinic network attractors. In this review we present a set of mathematical tools that are suitable for addressing the dynamics of oscillatory neural networks, broadening from a standard phase oscillator perspective to provide a practical framework for further successful applications of mathematics to understanding network dynamics in neuroscience.

The extent and drivers of gender imbalance in neuroscience reference lists

Like many scientific disciplines, neuroscience has increasingly attempted to confront pervasive gender imbalances within the field. While much of the conversation has centered around publishing and conference participation, recent research in other fields has called attention to the prevalence of gender bias in citation practices. Because of the downstream effects that citations can have on visibility and career advancement, understanding and eliminating gender bias in citation practices is vital for addressing inequity in a scientific community. In this study, we sought to determine whether there is evidence of gender bias in the citation practices of neuroscientists. Using data from five top neuroscience journals, we find that reference lists tend to include more papers with men as first and last author than would be expected if gender were not a factor in referencing. Importantly, we show that this overcitation of men and undercitation of women is driven largely by the citation practices of men, and is increasing over time as the field becomes more diverse. We develop a co-authorship network to assess homophily in researchers' social networks, and we find that men tend to ov

An Integrated e-science Analysis Base for Computation Neuroscience Experiments and Analysis

Recent developments in data management and imaging technologies have significantly affected diagnostic and extrapolative research in the understanding of neurodegenerative diseases. However, the impact of these new technologies is largely dependent on the speed and reliability with which the medical data can be visualised, analysed and interpreted. The EUs neuGRID for Users (N4U) is a follow-on project to neuGRID, which aims to provide an integrated environment to carry out computational neuroscience experiments. This paper reports on the design and development of the N4U Analysis Base and related Information Services, which addresses existing research and practical challenges by offering an integrated medical data analysis environment with the necessary building blocks for neuroscientists to optimally exploit neuroscience workflows, large image datasets and algorithms in order to conduct analyses. The N4U Analysis Base enables such analyses by indexing and interlinking the neuroimaging and clinical study datasets stored on the N4U Grid infrastructure, algorithms and scientific workflow definitions along with their associated provenance information.

preprint2011arXiv

An Introductory Review of Information Theory in the Context of Computational Neuroscience

This paper introduces several fundamental concepts in information theory from the perspective of their origins in engineering. Understanding such concepts is important in neuroscience for two reasons. Simply applying formulae from information theory without understanding the assumptions behind their definitions can lead to erroneous results and conclusions. Furthermore, this century will see a convergence of information theory and neuroscience; information theory will expand its foundations to incorporate more comprehensively biological processes thereby helping reveal how neuronal networks achieve their remarkable information processing abilities.

Application of the hierarchical bootstrap to multi-level data in neuroscience

A common feature in many neuroscience datasets is the presence of hierarchical data structures, most commonly recording the activity of multiple neurons in multiple animals across multiple trials. Accordingly, the measurements constituting the dataset are not independent, even though the traditional statistical analyses often applied in such cases (e.g., Students t-test) treat them as such. The hierarchical bootstrap has been shown to be an effective tool to accurately analyze such data and while it has been used extensively in the statistical literature, its use is not widespread in neuroscience - despite the ubiquity of hierarchical datasets. In this paper, we illustrate the intuitiveness and utility of this approach to analyze hierarchically nested datasets. We use simulated neural data to show that traditional statistical tests can result in a false positive rate of over 45%, even if the Type-I error rate is set at 5%. While summarizing data across non-independent points (or lower levels) can potentially fix this problem, this approach greatly reduces the statistical power of the analysis. The hierarchical bootstrap, when applied sequentially over the levels of the hierarchical

Whole Brain Vessel Graphs: A Dataset and Benchmark for Graph Learning and Neuroscience (VesselGraph)

Biological neural networks define the brain function and intelligence of humans and other mammals, and form ultra-large, spatial, structured graphs. Their neuronal organization is closely interconnected with the spatial organization of the brain's microvasculature, which supplies oxygen to the neurons and builds a complementary spatial graph. This vasculature (or the vessel structure) plays an important role in neuroscience; for example, the organization of (and changes to) vessel structure can represent early signs of various pathologies, e.g. Alzheimer's disease or stroke. Recently, advances in tissue clearing have enabled whole brain imaging and segmentation of the entirety of the mouse brain's vasculature. Building on these advances in imaging, we are presenting an extendable dataset of whole-brain vessel graphs based on specific imaging protocols. Specifically, we extract vascular graphs using a refined graph extraction scheme leveraging the volume rendering engine Voreen and provide them in an accessible and adaptable form through the OGB and PyTorch Geometric dataloaders. Moreover, we benchmark numerous state-of-the-art graph learning algorithms on the biologically relevant tasks of vessel prediction and vessel classification using the introduced vessel graph dataset. Our work paves a path towards advancing graph learning research into the field of neuroscience. Complementarily, the presented dataset raises challenging graph learning research questions for the machine learning community, in terms of incorporating biological priors into learning algorithms, or in scaling these algorithms to handle sparse,spatial graphs with millions of nodes and edges. All datasets and code are available for download at https://github.com/jocpae/VesselGraph .

Modular Acquisition and Stimulation System for Timestamp-Driven Neuroscience Experiments

Dedicated systems are fundamental for neuroscience experimental protocols that require timing determinism and synchronous stimuli generation. We developed a data acquisition and stimuli generator system for neuroscience research, optimized for recording timestamps from up to 6 spiking neurons and entirely specified in a high-level Hardware Description Language (HDL). Despite the logic complexity penalty of synthesizing from such a language, it was possible to implement our design in a low-cost small reconfigurable device. Under a modular framework, we explored two different memory arbitration schemes for our system, evaluating both their logic element usage and resilience to input activity bursts. One of them was designed with a decoupled and latency insensitive approach, allowing for easier code reuse, while the other adopted a centralized scheme, constructed specifically for our application. The usage of a high-level HDL allowed straightforward and stepwise code modifications to transform one architecture into the other. The achieved modularity is very useful for rapidly prototyping novel electronic instrumentation systems tailored to scientific research.

preprint2025arXiv

Efficient gPC-based quantification of probabilistic robustness for systems in neuroscience

Robustness analysis is very important in biology and neuroscience, to unravel behavioural patterns of systems that are conserved despite large parametric uncertainties. To make studies of probabilistic robustness more efficient and scalable when addressing complex models in neuroscience, we propose an alternative to computationally expensive Monte Carlo (MC) methods by introducing and analysing the generalised polynomial chaos (gPC) framework for uncertainty quantification. We consider both intrusive and non-intrusive gPC approaches, which turn out to be scalable and allow for a fast comprehensive exploration of parameter spaces. Focusing on widely used models of neural dynamics as case studies, we explore the trade-off between efficiency and accuracy of gPC methods, and we adopt the proposed methodology to investigate parametric uncertainties in models that feature multiple dynamic regimes.

preprint2013arXiv

Current practice in software development for computational neuroscience and how to improve it

Almost all research work in computational neuroscience involves software. As researchers try to understand ever more complex systems, there is a continual need for software with new capabilities. Because of the wide range of questions being investigated, new software is often developed rapidly by individuals or small groups. In these cases, it can be hard to demonstrate that the software gives the right results. Software developers are often open about the code they produce and willing to share it, but there is little appreciation among potential users of the great diversity of software development practices and end results, and how this affects the suitability of software tools for use in research projects. To help clarify these issues, we have reviewed a range of software tools and asked how the culture and practice of software development affects their validity and trustworthiness. We identified four key questions that can be used to categorize software projects and correlate them with the type of product that results. The first question addresses what is being produced. The other three concern why, how, and by whom the work is done. The answers to these questions show strong co

Mean-field behavior as a result of noisy local dynamics in self-organized criticality: Neuroscience implications

Motivated by recent experiments in neuroscience which indicate that neuronal avalanches exhibit scale invariant behavior similar to self-organized critical systems, we study the role of noisy (non-conservative) local dynamics on the critical behavior of a sandpile model which can be taken to mimic the dynamics of neuronal avalanches. We find that despite the fact that noise breaks the strict local conservation required to attain criticality, our system exhibit true criticality for a wide range of noise in various dimensions, given that conservation is respected \textit{on the average}. Although the system remains critical, exhibiting finite-size scaling, the value of critical exponents change depending on the intensity of local noise. Interestingly, for sufficiently strong noise level, the critical exponents approach and saturate at their mean-field values, consistent with empirical measurements of neuronal avalanches. This is confirmed for both two and three dimensional models. However, addition of noise does not affect the exponents at the upper critical dimension ( $D=4$ ). In addition to extensive finite-size scaling analysis of our systems, we also employ a useful time-series an

preprint2021arXiv

Guidelines for the Development of Immersive Virtual Reality Software for Cognitive Neuroscience and Neuropsychology: The Development of Virtual Reality Everyday Assessment Lab (VR-EAL)

Virtual reality (VR) head-mounted displays (HMD) appear to be effective research tools, which may address the problem of ecological validity in neuropsychological testing. However, their widespread implementation is hindered by VR induced symptoms and effects (VRISE) and the lack of skills in VR software development. This study offers guidelines for the development of VR software in cognitive neuroscience and neuropsychology, by describing and discussing the stages of the development of Virtual Reality Everyday Assessment Lab (VR-EAL), the first neuropsychological battery in immersive VR. Techniques for evaluating cognitive functions within a realistic storyline are discussed. The utility of various assets in Unity, software development kits, and other software are described so that cognitive scientists can overcome challenges pertinent to VRISE and the quality of the VR software. In addition, this pilot study attempts to evaluate VR-EAL in accordance with the necessary criteria for VR software for research purposes. The VR neuroscience questionnaire (VRNQ; Kourtesis et al., 2019b) was implemented to appraise the quality of the three versions of VR-EAL in terms of user experience, game mechanics, in-game assistance, and VRISE. Twenty-five participants aged between 20 and 45 years with 12-16 years of full-time education evaluated various versions of VR-EAL. The final version of VR-EAL achieved high scores in every sub-score of the VRNQ and exceeded its parsimonious cut-offs. It also appeared to have better in-game assistance and game mechanics, while its improved graphics substantially increased the quality of the user experience and almost eradicated VRISE. The results substantially support the feasibility of the development of effective VR research and clinical software without the presence of VRISE during a 60-minute VR session.

preprint2021arXiv

Technological Competence is a Precondition for Effective Implementation of Virtual Reality Head Mounted Displays in Human Neuroscience: A Technological Review and Meta-analysis

Immersive virtual reality (VR) emerges as a promising research and clinical tool. However, several studies suggest that VR induced adverse symptoms and effects (VRISE) may undermine the health and safety standards, and the reliability of the scientific results. In the current literature review, the technical reasons for the adverse symptomatology are investigated to provide suggestions and technological knowledge for the implementation of VR head-mounted display (HMD) systems in cognitive neuroscience. The technological systematic literature indicated features pertinent to display, sound, motion tracking, navigation, ergonomic interactions, user experience, and computer hardware that should be considered by the researchers. Subsequently, a meta-analysis of 44 neuroscientific or neuropsychological studies involving VR HMD systems was performed. The meta-analysis of the VR studies demonstrated that new generation HMDs induced significantly less VRISE and marginally fewer dropouts.Importantly, the commercial versions of the new generation HMDs with ergonomic interactions had zero incidents of adverse symptomatology and dropouts. HMDs equivalent to or greater than the commercial versions of contemporary HMDs accompanied with ergonomic interactions are suitable for implementation in cognitive neuroscience. In conclusion, researchers technological competency, along with meticulous methods and reports pertinent to software, hardware, and VRISE, are paramount to ensure the health and safety standards and the reliability of neuroscientific results.

Coupling Functions in Neuroscience

The interactions play one of the central roles in the brain mediating various processes and functions. They are particularly important for the brain as a complex system that has many different functions from the same structural connectivity. When studying such neural interactions the coupling functions are very suitable, as inherently they can reveal the underlaying functional mechanism. This chapter overviews some recent and widely used aspects of coupling functions for studying neural interactions. Coupling functions are discussed in connection to two different levels of brain interactions - that of neuron interactions and brainwave cross-frequency interactions. Aspects relevant to this from both, theory and methods, are presented. Although the discussion is based on neuroscience, there are strong implications from, and to, other fields as well.

Teaching Computational Neuroscience

The problems and beauty of teaching computational neuroscience are discussed by reviewing three new textbooks.