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Researcher profile

Yi Pan

Yi Pan contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningComputer VisionArtificial Intelligenceeess.IVComputation and Languagecond-mat.mes-hallCryptography and Securityeess.ASNeural and Evolutionary ComputingNeurons and Cognitionq-fin.STSound

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Published work

13 published item(s)

preprint2026arXiv

Achieving Fine-grained Cross-modal Understanding through Brain-inspired Hierarchical Representation Learning

Understanding neural responses to visual stimuli remains challenging due to the inherent complexity of brain representations and the modality gap between neural data and visual inputs. Existing methods, mainly based on reducing neural decoding to generation tasks or simple correlations, fail to reflect the hierarchical and temporal processes of visual processing in the brain. To address these limitations, we present NeuroAlign, a novel framework for fine-grained fMRI-video alignment inspired by the hierarchical organization of the human visual system. Our framework implements a two-stage mechanism that mirrors biological visual pathways: global semantic understanding through Neural-Temporal Contrastive Learning (NTCL) and fine-grained pattern matching through enhanced vector quantization. NTCL explicitly models temporal dynamics through bidirectional prediction between modalities, while our DynaSyncMM-EMA approach enables dynamic multi-modal fusion with adaptive weighting. Experiments demonstrate that NeuroAlign significantly outperforms existing methods in cross-modal retrieval tasks, establishing a new paradigm for understanding visual cognitive mechanisms.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Digital Twin AI: Opportunities and Challenges from Large Language Models to World Models

Digital twins, as precise digital representations of physical systems, have evolved from passive simulation tools into intelligent and autonomous entities through the integration of artificial intelligence technologies. This paper presents a unified four-stage framework that systematically characterizes AI integration across the digital twin lifecycle, spanning modeling, mirroring, intervention, and autonomous management. By synthesizing existing technologies and practices, we distill a unified four-stage framework that systematically characterizes how AI methodologies are embedded across the digital twin lifecycle: (1) modeling the physical twin through physics-based and physics-informed AI approaches, (2) mirroring the physical system into a digital twin with real-time synchronization, (3) intervening in the physical twin through predictive modeling, anomaly detection, and optimization strategies, and (4) achieving autonomous management through large language models, foundation models, and intelligent agents. We analyze the synergy between physics-based modeling and data-driven learning, highlighting the shift from traditional numerical solvers to physics-informed and foundation models for physical systems. Furthermore, we examine how generative AI technologies, including large language models and generative world models, transform digital twins into proactive and self-improving cognitive systems capable of reasoning, communication, and creative scenario generation. Through a cross-domain review spanning eleven application domains, including healthcare, aerospace, smart manufacturing, robotics, and smart cities, we identify common challenges related to scalability, explainability, and trustworthiness, and outline directions for responsible AI-driven digital twin systems.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

MedVIGIL: Evaluating Trustworthy Medical VLMs Under Broken Visual Evidence

Medical vision--language models (VLMs) are usually evaluated on intact image--question pairs, but trustworthy clinical use requires a stronger property: a model must recognise when the evidential basis for an answer has failed. We study this through silent failures under perturbed evidence, where a vision-required medical question is paired with a false premise, wording perturbation, knowledge-only rewrite, or ROI-corrupted image, yet the model returns a fluent non-refusal answer. We introduce medvigil, a 300-case evaluation suite drawn from four public medical VQA sources, supervised end to end by four board-certified radiologists: every gold answer, refusal option, candidate-answer set, paraphrase, false-premise trap, ROI box, and clinical risk tier is clinician-authored. Two attending radiologists annotate every case in parallel, a senior radiologist consolidates the released manifest, and a separate fourth radiologist independent of construction answers every probe to provide the human reference baseline. The release contains 2{,}556 MCQ probes, 240 counterfactual triplets, physician-adjudicated risk-tier and answerability flags, ROI boxes, and a paired open-ended variant. We report seven correctness-conditioned audit metrics that summarise into the medvigil Composite Score (MCS), and audit 16 vision-capable models plus two text-only baselines. The independent radiologist scores MCS 83.3 at silent-failure rate 5.8%, leaving a 14.1-point composite headroom above the strongest audited model (Claude Opus 4.7 at 69.2). The benchmark and evaluation harness are publicly released.

0 citations0 reviewsNo code linkedOpen access
preprint2024arXiv

Understanding LLMs: A Comprehensive Overview from Training to Inference

The introduction of ChatGPT has led to a significant increase in the utilization of Large Language Models (LLMs) for addressing downstream tasks. There's an increasing focus on cost-efficient training and deployment within this context. Low-cost training and deployment of LLMs represent the future development trend. This paper reviews the evolution of large language model training techniques and inference deployment technologies aligned with this emerging trend. The discussion on training includes various aspects, including data preprocessing, training architecture, pre-training tasks, parallel training, and relevant content related to model fine-tuning. On the inference side, the paper covers topics such as model compression, parallel computation, memory scheduling, and structural optimization. It also explores LLMs' utilization and provides insights into their future development.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Identification of Autism spectrum disorder based on a novel feature selection method and Variational Autoencoder

The development of noninvasive brain imaging such as resting-state functional magnetic resonance imaging (rs-fMRI) and its combination with AI algorithm provides a promising solution for the early diagnosis of Autism spectrum disorder (ASD). However, the performance of the current ASD classification based on rs-fMRI still needs to be improved. This paper introduces a classification framework to aid ASD diagnosis based on rs-fMRI. In the framework, we proposed a novel filter feature selection method based on the difference between step distribution curves (DSDC) to select remarkable functional connectivities (FCs) and utilized a multilayer perceptron (MLP) which was pretrained by a simplified Variational Autoencoder (VAE) for classification. We also designed a pipeline consisting of a normalization procedure and a modified hyperbolic tangent (tanh) activation function to replace the original tanh function, further improving the model accuracy. Our model was evaluated by 10 times 10-fold cross-validation and achieved an average accuracy of 78.12%, outperforming the state-of-the-art methods reported on the same dataset. Given the importance of sensitivity and specificity in disease diagnosis, two constraints were designed in our model which can improve the model's sensitivity and specificity by up to 9.32% and 10.21%, respectively. The added constraints allow our model to handle different application scenarios and can be used broadly.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Meta-data Study in Autism Spectrum Disorder Classification Based on Structural MRI

Accurate diagnosis of autism spectrum disorder (ASD) based on neuroimaging data has significant implications, as extracting useful information from neuroimaging data for ASD detection is challenging. Even though machine learning techniques have been leveraged to improve the information extraction from neuroimaging data, the varying data quality caused by different meta-data conditions (i.e., data collection strategies) limits the effective information that can be extracted, thus leading to data-dependent predictive accuracies in ASD detection, which can be worse than random guess in some cases. In this work, we systematically investigate the impact of three kinds of meta-data on the predictive accuracy of classifying ASD based on structural MRI collected from 20 different sites, where meta-data conditions vary.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Infant Cry Classification with Graph Convolutional Networks

We propose an approach of graph convolutional networks for robust infant cry classification. We construct non-fully connected graphs based on the similarities among the relevant nodes in both supervised and semi-supervised node classification with convolutional neural networks to consider the short-term and long-term effects of infant cry signals related to inner-class and inter-class messages. The approach captures the diversity of variations within infant cries, especially for limited training samples. The effectiveness of this approach is evaluated on Baby Chillanto Database and Baby2020 database. With as limited as 20% of labeled training data, our model outperforms that of CNN model with 80% labeled training data and the accuracy stably improves as the number of labeled training samples increases. The best results give significant improvements of 7.36% and 3.59% compared with the results of the CNN models on Baby Chillanto database and Baby2020 database respectively.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Topological States in Dimerized Quantum-Dot Chains Created by Atom Manipulation

Topological electronic phases exist in a variety of naturally occurring materials but can also be created artificially. We used a cryogenic scanning tunneling microscope to create dimerized chains of identical quantum dots on a semiconductor surface and to demonstrate that these chains give rise to one-dimensional topological phases. The dots were assembled from charged adatoms, creating a confining potential with single-atom precision acting on electrons in surface states of the semiconductor. Quantum coupling between the dots leads to electronic states localized at the ends of the chains, as well as at deliberately created internal domain walls, in agreement with the predictions of the Su-Schrieffer-Heeger model. Scanning tunneling spectroscopy also reveals deviations from this well-established model manifested in an asymmetric level spectrum and energy shifts of the boundary states. The deviations arise because the dots are charged and hence lead to an onsite potential that varies along the chain. We show that this variation can be mitigated by electrostatic gating using auxiliary charged adatoms, enabling fine-tuning of the boundary states and control of their quantum superposition. The experimental data, which are complemented by theoretical modeling of the potential and the resulting eigenstates, reveal the important role of electrostatics in these engineered quantum structures.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

A Novel Ensemble Deep Learning Model for Stock Prediction Based on Stock Prices and News

In recent years, machine learning and deep learning have become popular methods for financial data analysis, including financial textual data, numerical data, and graphical data. This paper proposes to use sentiment analysis to extract useful information from multiple textual data sources and a blending ensemble deep learning model to predict future stock movement. The blending ensemble model contains two levels. The first level contains two Recurrent Neural Networks (RNNs), one Long-Short Term Memory network (LSTM) and one Gated Recurrent Units network (GRU), followed by a fully connected neural network as the second level model. The RNNs, LSTM, and GRU models can effectively capture the time-series events in the input data, and the fully connected neural network is used to ensemble several individual prediction results to further improve the prediction accuracy. The purpose of this work is to explain our design philosophy and show that ensemble deep learning technologies can truly predict future stock price trends more effectively and can better assist investors in making the right investment decision than other traditional methods.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Efficient Hyperparameter Optimization in Deep Learning Using a Variable Length Genetic Algorithm

Convolutional Neural Networks (CNN) have gained great success in many artificial intelligence tasks. However, finding a good set of hyperparameters for a CNN remains a challenging task. It usually takes an expert with deep knowledge, and trials and errors. Genetic algorithms have been used in hyperparameter optimizations. However, traditional genetic algorithms with fixed-length chromosomes may not be a good fit for optimizing deep learning hyperparameters, because deep learning models have variable number of hyperparameters depending on the model depth. As the depth increases, the number of hyperparameters grows exponentially, and searching becomes exponentially harder. It is important to have an efficient algorithm that can find a good model in reasonable time. In this article, we propose to use a variable length genetic algorithm (GA) to systematically and automatically tune the hyperparameters of a CNN to improve its performance. Experimental results show that our algorithm can find good CNN hyperparameters efficiently. It is clear from our experiments that if more time is spent on optimizing the hyperparameters, better results could be achieved. Theoretically, if we had unlimited time and CPU power, we could find the optimized hyperparameters and achieve the best results in the future.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Gradient Amplification: An efficient way to train deep neural networks

Improving performance of deep learning models and reducing their training times are ongoing challenges in deep neural networks. There are several approaches proposed to address these challenges one of which is to increase the depth of the neural networks. Such deeper networks not only increase training times, but also suffer from vanishing gradients problem while training. In this work, we propose gradient amplification approach for training deep learning models to prevent vanishing gradients and also develop a training strategy to enable or disable gradient amplification method across several epochs with different learning rates. We perform experiments on VGG-19 and resnet (Resnet-18 and Resnet-34) models, and study the impact of amplification parameters on these models in detail. Our proposed approach improves performance of these deep learning models even at higher learning rates, thereby allowing these models to achieve higher performance with reduced training time.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Graph Convolution Networks Using Message Passing and Multi-Source Similarity Features for Predicting circRNA-Disease Association

Graphs can be used to effectively represent complex data structures. Learning these irregular data in graphs is challenging and still suffers from shallow learning. Applying deep learning on graphs has recently showed good performance in many applications in social analysis, bioinformatics etc. A message passing graph convolution network is such a powerful method which has expressive power to learn graph structures. Meanwhile, circRNA is a type of non-coding RNA which plays a critical role in human diseases. Identifying the associations between circRNAs and diseases is important to diagnosis and treatment of complex diseases. However, there are limited number of known associations between them and conducting biological experiments to identify new associations is time consuming and expensive. As a result, there is a need of building efficient and feasible computation methods to predict potential circRNA-disease associations. In this paper, we propose a novel graph convolution network framework to learn features from a graph built with multi-source similarity information to predict circRNA-disease associations. First we use multi-source information of circRNA similarity, disease and circRNA Gaussian Interaction Profile (GIP) kernel similarity to extract the features using first graph convolution. Then we predict disease associations for each circRNA with second graph convolution. Proposed framework with five-fold cross validation on various experiments shows promising results in predicting circRNA-disease association and outperforms other existing methods.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Improved Detection of Adversarial Images Using Deep Neural Networks

Machine learning techniques are immensely deployed in both industry and academy. Recent studies indicate that machine learning models used for classification tasks are vulnerable to adversarial examples, which limits the usage of applications in the fields with high precision requirements. We propose a new approach called Feature Map Denoising to detect the adversarial inputs and show the performance of detection on the mixed dataset consisting of adversarial examples generated by different attack algorithms, which can be used to associate with any pre-trained DNNs at a low cost. Wiener filter is also introduced as the denoise algorithm to the defense model, which can further improve performance. Experimental results indicate that good accuracy of detecting the adversarial examples can be achieved through our Feature Map Denoising algorithm.

0 citations0 reviewsNo code linkedOpen access