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Weixiong Zhang

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Published work

12 published item(s)

preprint2026arXiv

CHoE: Cross-Domain Heterogeneous Graph Prompt Learning via Structure-Conditioned Experts

Heterogeneous Graph Prompt Learning (HGPL)has emerged as a promising paradigm for bridging the gap between the objectives of pre-training foundation models and their downstream applications in heterogeneous graph settings. However, existing HGPL methods are primarily designed for in-domain scenarios, whereas real-world deployments often span multiple domains, and the data used for pre-training and downstream tasks may originate from different distributions. Consequently, the applicability of current HGPL approaches is limited to in-domain settings, and their performance typically degrades when application domains shift. To address this serious limitation, we develop CHoE, a cross-domain HGPL method built upon an expert network. During pre-training, we introduce and train structure-conditioned experts, and during prompt tuning, we adopt a structure-aware expert routing and load balancing mechanism to select structurally compatible experts for each meta-path view. In addition, we design a prompt-based semantic fusion module to integrate representations across multiple views for downstream prediction. Extensive experiments show that CHoE consistently improves performance in few-shot cross-domain applications, outperforming all baseline approaches.

preprint2022arXiv

Control hubs of complex networks and a polynomial-time identification algorithm

Unveiling the underlying control principles of complex networks is one of the ultimate goals of network science. We introduce a novel concept, control hub, to reveal a cornerstone of the control structure of a network. The control hubs of a network are the nodes that lie in the middle of a control path in every control scheme of the network. We present a theorem based on graph theory for identifying control hubs without computing all control schemes. We develop an algorithm to identify all control hubs in O(N0.5L) time complexity for a network of N nodes and L links.

preprint2022arXiv

Development and Commissioning of a Compact Cosmic Ray Muon Imaging Prototype

Due to the muon tomography's capability of imaging high Z materials, some potential applications have been reported on inspecting smuggled nuclear materials in customs. A compact Cosmic Ray Muons (CRM) imaging prototype, Lanzhou University Muon Imaging System (LUMIS), is comprehensively introduced in this paper including the structure design, assembly, data acquisition and analysis, detector performance test, and material imaging commissioning etc. Casted triangular prism plastic scintillators (PS) were coupled with Si-PMs for sensitive detector components in system. LUMIS's experimental results show that the detection efficiency of an individual detector layer is about 98%, the position resolution for vertical incident muons is 2.5 mm and the angle resolution is 8.73 mrad given a separation distance of 40.5 cm. Moreover, the image reconstruction software was developed based on the Point of Closest Approach (PoCA) to detect lead bricks as our target. The reconstructed images indicate that the profile of the lead bricks in the image is highly consistent with the target. Subsequently, the capability of LUMIS to distinguish different materials, such as Pb, Cu, Fe, and Al, was investigated as well. The lower limit of response time for rapidly alarming high-Z materials is also given and discussed. The successful development and commissioning of the LUMIS prototype have provided a new solution option in technology and craftsmanship for developing compact CRM imaging systems that can be used in many applications.

preprint2022arXiv

Pyramid Medical Transformer for Medical Image Segmentation

Deep neural networks have been a prevailing technique in the field of medical image processing. However, the most popular convolutional neural networks (CNNs) based methods for medical image segmentation are imperfect because they model long-range dependencies by stacking layers or enlarging filters. Transformers and the self-attention mechanism are recently proposed to effectively learn long-range dependencies by modeling all pairs of word-to-word attention regardless of their positions. The idea has also been extended to the computer vision field by creating and treating image patches as embeddings. Considering the computation complexity for whole image self-attention, current transformer-based models settle for a rigid partitioning scheme that potentially loses informative relations. Besides, current medical transformers model global context on full resolution images, leading to unnecessary computation costs. To address these issues, we developed a novel method to integrate multi-scale attention and CNN feature extraction using a pyramidal network architecture, namely Pyramid Medical Transformer (PMTrans). The PMTrans captured multi-range relations by working on multi-resolution images. An adaptive partitioning scheme was implemented to retain informative relations and to access different receptive fields efficiently. Experimental results on three medical image datasets (gland segmentation, MoNuSeg, and HECKTOR datasets) showed that PMTrans outperformed the latest CNN-based and transformer-based models for medical image segmentation.

preprint2022arXiv

RAW-GNN: RAndom Walk Aggregation based Graph Neural Network

Graph-Convolution-based methods have been successfully applied to representation learning on homophily graphs where nodes with the same label or similar attributes tend to connect with one another. Due to the homophily assumption of Graph Convolutional Networks (GCNs) that these methods use, they are not suitable for heterophily graphs where nodes with different labels or dissimilar attributes tend to be adjacent. Several methods have attempted to address this heterophily problem, but they do not change the fundamental aggregation mechanism of GCNs because they rely on summation operators to aggregate information from neighboring nodes, which is implicitly subject to the homophily assumption. Here, we introduce a novel aggregation mechanism and develop a RAndom Walk Aggregation-based Graph Neural Network (called RAW-GNN) method. The proposed approach integrates the random walk strategy with graph neural networks. The new method utilizes breadth-first random walk search to capture homophily information and depth-first search to collect heterophily information. It replaces the conventional neighborhoods with path-based neighborhoods and introduces a new path-based aggregator based on Recurrent Neural Networks. These designs make RAW-GNN suitable for both homophily and heterophily graphs. Extensive experimental results showed that the new method achieved state-of-the-art performance on a variety of homophily and heterophily graphs.

preprint2022arXiv

Response to: Significance and stability of deep learning-based identification of subtypes within major psychiatric disorders. Molecular Psychiatry (2022)

Recently, Winter and Hahn [1] commented on our work on identifying subtypes of major psychiatry disorders (MPDs) based on neurobiological features using machine learning [2]. They questioned the generalizability of our methods and the statistical significance, stability, and overfitting of the results, and proposed a pipeline for disease subtyping. We appreciate their earnest consideration of our work, however, we need to point out their misconceptions of basic machine-learning concepts and delineate some key issues involved.

preprint2021arXiv

Weaving Attention U-net: A Novel Hybrid CNN and Attention-based Method for Organs-at-risk Segmentation in Head and Neck CT Images

In radiotherapy planning, manual contouring is labor-intensive and time-consuming. Accurate and robust automated segmentation models improve the efficiency and treatment outcome. We aim to develop a novel hybrid deep learning approach, combining convolutional neural networks (CNNs) and the self-attention mechanism, for rapid and accurate multi-organ segmentation on head and neck computed tomography (CT) images. Head and neck CT images with manual contours of 115 patients were retrospectively collected and used. We set the training/validation/testing ratio to 81/9/25 and used the 10-fold cross-validation strategy to select the best model parameters. The proposed hybrid model segmented ten organs-at-risk (OARs) altogether for each case. The performance of the model was evaluated by three metrics, i.e., the Dice Similarity Coefficient (DSC), Hausdorff distance 95% (HD95), and mean surface distance (MSD). We also tested the performance of the model on the Head and Neck 2015 challenge dataset and compared it against several state-of-the-art automated segmentation algorithms. The proposed method generated contours that closely resemble the ground truth for ten OARs. Our results of the new Weaving Attention U-net demonstrate superior or similar performance on the segmentation of head and neck CT images.

preprint2017arXiv

An efficient algorithm for finding all possible input nodes for controlling complex networks

Understanding structural controllability of a complex network requires to identify a Minimum Input nodes Set (MIS) of the network. It has been suggested that finding an MIS is equivalent to computing a maximum matching of the network, where the unmatched nodes constitute an MIS. However, maximum matching of a network is often not unique, and finding all MISs may provide deep insights to the controllability of the network. Finding all possible input nodes, which form the union of all MISs, is computationally challenging for large networks. Here we present an efficient enumerative algorithm for the problem. The main idea is to modify a maximum matching algorithm to make it efficient for finding all possible input nodes by computing only one MIS. We rigorously proved the correctness of the new algorithm and evaluated its performance on synthetic and large real networks. The experimental results showed that the new algorithm ran several orders of magnitude faster than the existing method on large real networks.

preprint2014arXiv

An Effective Algorithm for and Phase Transitions of the Directed Hamiltonian Cycle Problem

The Hamiltonian cycle problem (HCP) is an important combinatorial problem with applications in many areas. It is among the first problems used for studying intrinsic properties, including phase transitions, of combinatorial problems. While thorough theoretical and experimental analyses have been made on the HCP in undirected graphs, a limited amount of work has been done for the HCP in directed graphs (DHCP). The main contribution of this work is an effective algorithm for the DHCP. Our algorithm explores and exploits the close relationship between the DHCP and the Assignment Problem (AP) and utilizes a technique based on Boolean satisfiability (SAT). By combining effective algorithms for the AP and SAT, our algorithm significantly outperforms previous exact DHCP algorithms, including an algorithm based on the award-winning Concorde TSP algorithm. The second result of the current study is an experimental analysis of phase transitions of the DHCP, verifying and refining a known phase transition of the DHCP.

preprint2014arXiv

SAS+ Planning as Satisfiability

Planning as satisfiability is a principal approach to planning with many eminent advantages. The existing planning as satisfiability techniques usually use encodings compiled from STRIPS. We introduce a novel SAT encoding scheme (SASE) based on the SAS+ formalism. The new scheme exploits the structural information in SAS+, resulting in an encoding that is both more compact and efficient for planning. We prove the correctness of the new encoding by establishing an isomorphism between the solution plans of SASE and that of STRIPS based encodings. We further analyze the transition variables newly introduced in SASE to explain why it accommodates modern SAT solving algorithms and improves performance. We give empirical statistical results to support our analysis. We also develop a number of techniques to further reduce the encoding size of SASE, and conduct experimental studies to show the strength of each individual technique. Finally, we report extensive experimental results to demonstrate significant improvements of SASE over the state-of-the-art STRIPS based encoding schemes in terms of both time and memory efficiency.

preprint2013arXiv

Flexible and Approximate Computation through State-Space Reduction

In the real world, insufficient information, limited computation resources, and complex problem structures often force an autonomous agent to make a decision in time less than that required to solve the problem at hand completely. Flexible and approximate computations are two approaches to decision making under limited computation resources. Flexible computation helps an agent to flexibly allocate limited computation resources so that the overall system utility is maximized. Approximate computation enables an agent to find the best satisfactory solution within a deadline. In this paper, we present two state-space reduction methods for flexible and approximate computation: quantitative reduction to deal with inaccurate heuristic information, and structural reduction to handle complex problem structures. These two methods can be applied successively to continuously improve solution quality if more computation is available. Our results show that these reduction methods are effective and efficient, finding better solutions with less computation than some existing well-known methods.

preprint2013arXiv

Identification of hybrid node and link communities in complex networks

Identification of communities in complex networks has become an effective means to analysis of complex systems. It has broad applications in diverse areas such as social science, engineering, biology and medicine. Finding communities of nodes and finding communities of links are two popular schemes for network structure analysis. These schemes, however, have inherent drawbacks and are often inadequate to properly capture complex organizational structures in real networks. We introduce a new scheme and effective approach for identifying complex network structures using a mixture of node and link communities, called hybrid node-link communities. A central piece of our approach is a probabilistic model that accommodates node, link and hybrid node-link communities. Our extensive experiments on various real-world networks, including a large protein-protein interaction network and a large semantic association network of commonly used words, illustrated that the scheme for hybrid communities is superior in revealing network characteristics. Moreover, the new approach outperformed the existing methods for finding node or link communities separately.