Researcher profile

Tianyu Wu

Tianyu Wu contributes to research discovery and scholarly infrastructure.

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Published work

3 published item(s)

preprint2026arXiv

D-PACE: Dynamic Position-Aware Cross-Entropy for Parallel Speculative Drafting

Speculative decoding accelerates LLM inference by having a small drafter propose tokens that a larger target model verifies in parallel. Recent diffusion-based parallel drafters such as DFlash predict the full B-token block in one forward pass, enabling deeper drafters and longer accepted blocks. However, existing multi-token drafter objectives often use fixed position-dependent weighting schedules, such as head-dependent weights or block-position decays, which do not adapt as the positions limiting acceptance change during training. To address this, we derive per-position training weights from a differentiable surrogate of expected accepted draft length, matching the weight of each position to its log-probability gradient contribution. The resulting loss, D-PACE (Dynamic Position-Aware Cross-Entropy), shifts training signal toward positions that currently limit acceptance as the drafter improves. Across six benchmarks, two Qwen3-4B draft depths, two decoding temperatures, and two additional target models, D-PACE consistently improves both wall-clock speedup and average emitted length, with 2.3\% measured training-time overhead and no changes to the drafter architecture or inference procedure.

preprint2026arXiv

Markovian Promoter Models: A Mechanistic Alternative to Hill Functions in Gene Regulatory Networks

Gene regulatory networks are typically modeled using ordinary differential equations (ODEs) with phenomenological Hill functions to represent transcriptional regulation. While computationally efficient, Hill functions lack mechanistic grounding and cannot capture stochastic promoter dynamics. We present a hybrid Markovian-ODE framework that explicitly models discrete promoter states while maintaining computational tractability. Uniquely, we parameterize this model using fractional dwell times derived from ChEC-seq data, enabling the inference of in vivo kinetic rates from steady-state chromatin profiling. Our approach tracks individual transcription factor binding events as a continuous-time Markov chain, linked to deterministic molecular dynamics. We validate this framework on seven gene regulatory systems spanning basic to advanced complexity: the GAL system, repressilator, Goodwin oscillator, toggle switch, incoherent feed-forward loop, p53-Mdm2 oscillator, and NF-$κ$B pathway. Comparison with stochastic simulation algorithm (SSA) ground truth demonstrates that Markovian promoter models achieve similar accuracy to full stochastic simulations while being 10-100$\times$ faster. Our framework provides a mechanistic foundation for gene regulation modeling and enables investigation of promoter-level stochasticity in complex regulatory networks.

preprint2022arXiv

Deploying self-supervised learning in the wild for hybrid automatic speech recognition

Self-supervised learning (SSL) methods have proven to be very successful in automatic speech recognition (ASR). These great improvements have been reported mostly based on highly curated datasets such as LibriSpeech for non-streaming End-to-End ASR models. However, the pivotal characteristics of SSL is to be utilized for any untranscribed audio data. In this paper, we provide a full exploration on how to utilize uncurated audio data in SSL from data pre-processing to deploying an streaming hybrid ASR model. More specifically, we present (1) the effect of Audio Event Detection (AED) model in data pre-processing pipeline (2) analysis on choosing optimizer and learning rate scheduling (3) comparison of recently developed contrastive losses, (4) comparison of various pre-training strategies such as utilization of in-domain versus out-domain pre-training data, monolingual versus multilingual pre-training data, multi-head multilingual SSL versus single-head multilingual SSL and supervised pre-training versus SSL. The experimental results show that SSL pre-training with in-domain uncurated data can achieve better performance in comparison to all the alternative out-domain pre-training strategies.