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Researcher profile

Tailin Wu

Tailin Wu contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningComputer VisionInformation Theorymath.ITArtificial IntelligenceGenomicsphysics.data-anphysics.geo-ph

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Published work

7 published item(s)

preprint2026arXiv

PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference

Single-cell trajectory inference from destructive time-course snapshots is fundamentally ill-posed: neither cross-time cell correspondences nor continuous trajectories are observed, so the snapshot distributions alone do not uniquely determine the underlying dynamics. Existing optimal transport and flow-based methods typically couple cells by Euclidean proximity at observed clock times, which can misalign trajectories when development is asynchronous and cells sampled at the same experimental time occupy different latent pseudotime stages. We propose PACE, a trajectory inference framework that recovers geometry-consistent continuous transport dynamics from destructive time-course snapshots through three coupled components. First, PACE constructs a state- and time-dependent anisotropic Riemannian metric that assigns low transport cost along locally supported tangent directions while penalizing normal velocity components. Second, it alternates between refining cross-time couplings under the induced path-action cost and fitting endpoint-preserving neural bridges between adjacent snapshots. Third, it distills the learned bridge dynamics into a global continuous-time velocity field over cellular states. Across seven controlled and biological datasets covering nine held-out reconstruction experiments, PACE achieves the strongest overall reconstruction performance, reducing MMD, Wasserstein-1 distance, and Wasserstein-2 distance by 23.7% on average relative to the strongest competing baseline. PACE also improves RNA-velocity alignment by 15.4% on an embryoid body differentiation benchmark, without requiring explicit cell pairing, lineage tracing, or RNA-velocity supervision during training. Code is available at https://github.com/AI4Science-WestlakeU/PACE.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Learning Large-scale Subsurface Simulations with a Hybrid Graph Network Simulator

Subsurface simulations use computational models to predict the flow of fluids (e.g., oil, water, gas) through porous media. These simulations are pivotal in industrial applications such as petroleum production, where fast and accurate models are needed for high-stake decision making, for example, for well placement optimization and field development planning. Classical finite difference numerical simulators require massive computational resources to model large-scale real-world reservoirs. Alternatively, streamline simulators and data-driven surrogate models are computationally more efficient by relying on approximate physics models, however they are insufficient to model complex reservoir dynamics at scale. Here we introduce Hybrid Graph Network Simulator (HGNS), which is a data-driven surrogate model for learning reservoir simulations of 3D subsurface fluid flows. To model complex reservoir dynamics at both local and global scale, HGNS consists of a subsurface graph neural network (SGNN) to model the evolution of fluid flows, and a 3D-U-Net to model the evolution of pressure. HGNS is able to scale to grids with millions of cells per time step, two orders of magnitude higher than previous surrogate models, and can accurately predict the fluid flow for tens of time steps (years into the future). Using an industry-standard subsurface flow dataset (SPE-10) with 1.1 million cells, we demonstrate that HGNS is able to reduce the inference time up to 18 times compared to standard subsurface simulators, and that it outperforms other learning-based models by reducing long-term prediction errors by up to 21%.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

ViRel: Unsupervised Visual Relations Discovery with Graph-level Analogy

Visual relations form the basis of understanding our compositional world, as relationships between visual objects capture key information in a scene. It is then advantageous to learn relations automatically from the data, as learning with predefined labels cannot capture all possible relations. However, current relation learning methods typically require supervision, and are not designed to generalize to scenes with more complicated relational structures than those seen during training. Here, we introduce ViRel, a method for unsupervised discovery and learning of Visual Relations with graph-level analogy. In a setting where scenes within a task share the same underlying relational subgraph structure, our learning method of contrasting isomorphic and non-isomorphic graphs discovers the relations across tasks in an unsupervised manner. Once the relations are learned, ViRel can then retrieve the shared relational graph structure for each task by parsing the predicted relational structure. Using a dataset based on grid-world and the Abstract Reasoning Corpus, we show that our method achieves above 95% accuracy in relation classification, discovers the relation graph structure for most tasks, and further generalizes to unseen tasks with more complicated relational structures.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Discovering Nonlinear Relations with Minimum Predictive Information Regularization

Identifying the underlying directional relations from observational time series with nonlinear interactions and complex relational structures is key to a wide range of applications, yet remains a hard problem. In this work, we introduce a novel minimum predictive information regularization method to infer directional relations from time series, allowing deep learning models to discover nonlinear relations. Our method substantially outperforms other methods for learning nonlinear relations in synthetic datasets, and discovers the directional relations in a video game environment and a heart-rate vs. breath-rate dataset.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Intelligence, physics and information -- the tradeoff between accuracy and simplicity in machine learning

How can we enable machines to make sense of the world, and become better at learning? To approach this goal, I believe viewing intelligence in terms of many integral aspects, and also a universal two-term tradeoff between task performance and complexity, provides two feasible perspectives. In this thesis, I address several key questions in some aspects of intelligence, and study the phase transitions in the two-term tradeoff, using strategies and tools from physics and information. Firstly, how can we make the learning models more flexible and efficient, so that agents can learn quickly with fewer examples? Inspired by how physicists model the world, we introduce a paradigm and an AI Physicist agent for simultaneously learning many small specialized models (theories) and the domain they are accurate, which can then be simplified, unified and stored, facilitating few-shot learning in a continual way. Secondly, for representation learning, when can we learn a good representation, and how does learning depend on the structure of the dataset? We approach this question by studying phase transitions when tuning the tradeoff hyperparameter. In the information bottleneck, we theoretically show that these phase transitions are predictable and reveal structure in the relationships between the data, the model, the learned representation and the loss landscape. Thirdly, how can agents discover causality from observations? We address part of this question by introducing an algorithm that combines prediction and minimizing information from the input, for exploratory causal discovery from observational time series. Fourthly, to make models more robust to label noise, we introduce Rank Pruning, a robust algorithm for classification with noisy labels. I believe that building on the work of my thesis we will be one step closer to enable more intelligent machines that can make sense of the world.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Pareto-optimal data compression for binary classification tasks

The goal of lossy data compression is to reduce the storage cost of a data set $X$ while retaining as much information as possible about something ($Y$) that you care about. For example, what aspects of an image $X$ contain the most information about whether it depicts a cat? Mathematically, this corresponds to finding a mapping $X\to Z\equiv f(X)$ that maximizes the mutual information $I(Z,Y)$ while the entropy $H(Z)$ is kept below some fixed threshold. We present a method for mapping out the Pareto frontier for classification tasks, reflecting the tradeoff between retained entropy and class information. We first show how a random variable $X$ (an image, say) drawn from a class $Y\in\{1,...,n\}$ can be distilled into a vector $W=f(X)\in \mathbb{R}^{n-1}$ losslessly, so that $I(W,Y)=I(X,Y)$; for example, for a binary classification task of cats and dogs, each image $X$ is mapped into a single real number $W$ retaining all information that helps distinguish cats from dogs. For the $n=2$ case of binary classification, we then show how $W$ can be further compressed into a discrete variable $Z=g_β(W)\in\{1,...,m_β\}$ by binning $W$ into $m_β$ bins, in such a way that varying the parameter $β$ sweeps out the full Pareto frontier, solving a generalization of the Discrete Information Bottleneck (DIB) problem. We argue that the most interesting points on this frontier are "corners" maximizing $I(Z,Y)$ for a fixed number of bins $m=2,3...$ which can be conveniently be found without multiobjective optimization. We apply this method to the CIFAR-10, MNIST and Fashion-MNIST datasets, illustrating how it can be interpreted as an information-theoretically optimal image clustering algorithm.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Phase Transitions for the Information Bottleneck in Representation Learning

In the Information Bottleneck (IB), when tuning the relative strength between compression and prediction terms, how do the two terms behave, and what's their relationship with the dataset and the learned representation? In this paper, we set out to answer these questions by studying multiple phase transitions in the IB objective: $\text{IB}_β[p(z|x)] = I(X; Z) - βI(Y; Z)$ defined on the encoding distribution p(z|x) for input $X$, target $Y$ and representation $Z$, where sudden jumps of $dI(Y; Z)/d β$ and prediction accuracy are observed with increasing $β$. We introduce a definition for IB phase transitions as a qualitative change of the IB loss landscape, and show that the transitions correspond to the onset of learning new classes. Using second-order calculus of variations, we derive a formula that provides a practical condition for IB phase transitions, and draw its connection with the Fisher information matrix for parameterized models. We provide two perspectives to understand the formula, revealing that each IB phase transition is finding a component of maximum (nonlinear) correlation between $X$ and $Y$ orthogonal to the learned representation, in close analogy with canonical-correlation analysis (CCA) in linear settings. Based on the theory, we present an algorithm for discovering phase transition points. Finally, we verify that our theory and algorithm accurately predict phase transitions in categorical datasets, predict the onset of learning new classes and class difficulty in MNIST, and predict prominent phase transitions in CIFAR10.

0 citations0 reviewsNo code linkedOpen access