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Researcher profile

Seungjoon Lee

Seungjoon Lee contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Artificial IntelligenceMachine Learningmath.DSQuantitative Methodseess.SYmath.NAmath.OCNumerical AnalysisRoboticsSystems and Control

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Published work

5 published item(s)

preprint2026arXiv

ProCompNav: Proactive Instance Navigation with Comparative Judgment for Ambiguous User Queries

Natural-language instance navigation becomes challenging when the initial user request does not uniquely specify the target instance. A practical agent should reduce the user's burden by actively asking only the information needed to distinguish the target from similar distractors, rather than requiring a detailed description upfront. Existing approaches often fall short of this goal: they may stop at the first plausible candidate before sufficiently exploring alternatives, or, even after collecting multiple candidates, ask about the target's attributes derived from individual candidates rather than questions selected to distinguish candidates in the pool. As a result, despite the dialogue, the agent may still fail to distinguish the target from distractors, leading to premature decisions and lengthy user responses. We propose Proactive Instance Navigation with Comparative Judgment (ProCompNav), a two-stage framework that first constructs a candidate pool and then identifies the target through comparative judgment. At each round, ProCompNav extracts an attribute-value pair that splits the current pool, asks a binary yes/no question, and prunes all inconsistent candidates at once. This reframes disambiguation from open-ended target description to pool-level discriminative questioning, where each question is chosen to narrow the candidate set. On CoIN-Bench, ProCompNav improves Success Rate over interactive baselines with the same minimal input and non-interactive baselines with detailed descriptions, while substantially reducing Response Length. ProCompNav also achieves state-of-the-art Success Rate on TextNav, suggesting that comparative judgment is broadly useful for instance-level navigation among similar distractors. Code is available at https://github.com/tree-jhk/procompnav.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Data-driven Discovery of Chemotactic Migration of Bacteria via Machine Learning

E. coli chemotactic motion in the presence of a chemoattractant field has been extensively studied using wet laboratory experiments, stochastic computational models as well as partial differential equation-based models (PDEs). The most challenging step in bridging these approaches, is establishing a closed form of the so-called chemotactic term, which describes how bacteria bias their motion up chemonutrient concentration gradients, as a result of a cascade of biochemical processes. Data-driven models can be used to learn the entire evolution operator of the chemotactic PDEs (black box models), or, in a more targeted fashion, to learn just the chemotactic term (gray box models). In this work, data-driven Machine Learning approaches for learning the underlying model PDEs are (a) validated through the use of simulation data from established continuum models and (b) used to infer chemotactic PDEs from experimental data. Even when the data at hand are sparse (coarse in space and/or time), noisy (due to inherent stochasticity in measurements) or partial (e.g. lack of measurements of the associated chemoattractant field), we can attempt to learn the right-hand-side of a closed PDE for an evolving bacterial density. In fact we show that data-driven PDEs including a short history of the bacterial density field (e.g. in the form of higher-order in time PDEs in terms of the measurable bacterial density) can be successful in predicting further bacterial density evolution, and even possibly recovering estimates of the unmeasured chemonutrient field. The main tool in this effort is the effective low-dimensionality of the dynamics (in the spirit of the Whitney and Takens embedding theorems). The resulting data-driven PDE can then be simulated to reproduce/predict computational or experimental bacterial density profile data, and estimate the underlying (unmeasured) chemonutrient field evolution.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Learning black- and gray-box chemotactic PDEs/closures from agent based Monte Carlo simulation data

We propose a machine learning framework for the data-driven discovery of macroscopic chemotactic Partial Differential Equations (PDEs) -- and the closures that lead to them -- from high-fidelity, individual-based stochastic simulations of E.coli bacterial motility. The fine scale, detailed, hybrid (continuum - Monte Carlo) simulation model embodies the underlying biophysics, and its parameters are informed from experimental observations of individual cells. We exploit Automatic Relevance Determination (ARD) within a Gaussian Process framework for the identification of a parsimonious set of collective observables that parametrize the law of the effective PDEs. Using these observables, in a second step we learn effective, coarse-grained "Keller-Segel class" chemotactic PDEs using machine learning regressors: (a) (shallow) feedforward neural networks and (b) Gaussian Processes. The learned laws can be black-box (when no prior knowledge about the PDE law structure is assumed) or gray-box when parts of the equation (e.g. the pure diffusion part) is known and "hardwired" in the regression process. We also discuss data-driven corrections (both additive and functional) of analytically known, approximate closures.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Blended Dynamics Approach to Distributed Optimization: Sum Convexity and Convergence Rate

This paper studies the application of the blended dynamics approach towards distributed optimization problem where the global cost function is given by a sum of local cost functions. The benefits include (i) individual cost function need not be convex as long as the global cost function is strongly convex and (ii) the convergence rate of the distributed algorithm is arbitrarily close to the convergence rate of the centralized one. Two particular continuous-time algorithms are presented using the proportional-integral-type couplings. One has benefit of `initialization-free,' so that agents can join or leave the network during the operation. The other one has the minimal amount of communication information. After presenting a general theorem that can be used for designing distributed algorithms, we particularly present a distributed heavy-ball method and discuss its strength over other methods.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Coarse-scale PDEs from fine-scale observations via machine learning

Complex spatiotemporal dynamics of physicochemical processes are often modeled at a microscopic level (through e.g. atomistic, agent-based or lattice models) based on first principles. Some of these processes can also be successfully modeled at the macroscopic level using e.g. partial differential equations (PDEs) describing the evolution of the right few macroscopic observables (e.g. concentration and momentum fields). Deriving good macroscopic descriptions (the so-called "closure problem") is often a time-consuming process requiring deep understanding/intuition about the system of interest. Recent developments in data science provide alternative ways to effectively extract/learn accurate macroscopic descriptions approximating the underlying microscopic observations. In this paper, we introduce a data-driven framework for the identification of unavailable coarse-scale PDEs from microscopic observations via machine learning algorithms. Specifically, using Gaussian Processes, Artificial Neural Networks, and/or Diffusion Maps, the proposed framework uncovers the relation between the relevant macroscopic space fields and their time evolution (the right-hand-side of the explicitly unavailable macroscopic PDE). Interestingly, several choices equally representative of the data can be discovered. The framework will be illustrated through the data-driven discovery of macroscopic, concentration-level PDEs resulting from a fine-scale, Lattice Boltzmann level model of a reaction/transport process. Once the coarse evolution law is identified, it can be simulated to produce long-term macroscopic predictions. Different features (pros as well as cons) of alternative machine learning algorithms for performing this task (Gaussian Processes and Artificial Neural Networks), are presented and discussed.

0 citations0 reviewsNo code linkedOpen access