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Scarlett Raine

Scarlett Raine contributes to research discovery and scholarly infrastructure.

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Published work

5 published item(s)

preprint2026arXiv

Human-in-the-Loop Segmentation of Multi-species Coral Imagery

Marine surveys by robotic underwater and surface vehicles result in substantial quantities of coral reef imagery, however labeling these images is expensive and time-consuming for domain experts. Point label propagation is a technique that uses existing images labeled with sparse points to create augmented ground truth data, which can be used to train a semantic segmentation model. In this work, we show that recent advances in large foundation models facilitate the creation of augmented ground truth masks using only features extracted by the denoised version of the DINOv2 foundation model and K-Nearest Neighbors (KNN), without any pre-training. For images with extremely sparse labels, we use human-in-the-loop principles to enhance annotation efficiency: if there are 5 point labels per image, our method outperforms the prior state-of-the-art by 19.7% for mIoU. When human-in-the-loop labeling is not available, using the denoised DINOv2 features with a KNN still improves on the prior state-of-the-art by 5.8% for mIoU (5 grid points). On the semantic segmentation task, we outperform the prior state-of-the-art by 13.5% for mIoU when only 5 point labels are used for point label propagation. Additionally, we perform a comprehensive study into the number and placement of point labels, and make several recommendations for improving the efficiency of labeling images with points.

preprint2026arXiv

Why Domain Matters: A Preliminary Study of Domain Effects in Underwater Object Detection

Domain shift, where deviations between training and deployment data distributions degrade model performance, is a key challenge in underwater environments. Existing benchmarks testing performance for underwater domain shift simulate variability through synthetic style transfer. This fails to capture intrinsic scene factors such as visibility, illumination, scene composition, or acquisition factors, limiting analysis of real-world effects. We propose a labeling framework that defines underwater domains using measurable image, scene, and acquisition characteristics. Unlike prior benchmarks, it captures physically meaningful factors, enabling semantically consistent image grouping and supporting domain-specific evaluation of detection performance including failure analysis. We validate this on public datasets, showing systematic variations across domain factors and revealing hidden failure modes.

preprint2022arXiv

Point Label Aware Superpixels for Multi-species Segmentation of Underwater Imagery

Monitoring coral reefs using underwater vehicles increases the range of marine surveys and availability of historical ecological data by collecting significant quantities of images. Analysis of this imagery can be automated using a model trained to perform semantic segmentation, however it is too costly and time-consuming to densely label images for training supervised models. In this letter, we leverage photo-quadrat imagery labeled by ecologists with sparse point labels. We propose a point label aware method for propagating labels within superpixel regions to obtain augmented ground truth for training a semantic segmentation model. Our point label aware superpixel method utilizes the sparse point labels, and clusters pixels using learned features to accurately generate single-species segments in cluttered, complex coral images. Our method outperforms prior methods on the UCSD Mosaics dataset by 3.62% for pixel accuracy and 8.35% for mean IoU for the label propagation task, while reducing computation time reported by previous approaches by 76%. We train a DeepLabv3+ architecture and outperform state-of-the-art for semantic segmentation by 2.91% for pixel accuracy and 9.65% for mean IoU on the UCSD Mosaics dataset and by 4.19% for pixel accuracy and 14.32% mean IoU for the Eilat dataset.

preprint2021arXiv

DeepSeagrass Dataset

We introduce a dataset of seagrass images collected by a biologist snorkelling in Moreton Bay, Queensland, Australia, as described in our publication: arXiv:2009.09924. The images are labelled at the image-level by collecting images of the same morphotype in a folder hierarchy. We also release pre-trained models and training codes for detection and classification of seagrass species at the patch level at https://github.com/csiro-robotics/deepseagrass.

preprint2020arXiv

Multi-species Seagrass Detection and Classification from Underwater Images

Underwater surveys conducted using divers or robots equipped with customized camera payloads can generate a large number of images. Manual review of these images to extract ecological data is prohibitive in terms of time and cost, thus providing strong incentive to automate this process using machine learning solutions. In this paper, we introduce a multi-species detector and classifier for seagrasses based on a deep convolutional neural network (achieved an overall accuracy of 92.4%). We also introduce a simple method to semi-automatically label image patches and therefore minimize manual labelling requirement. We describe and release publicly the dataset collected in this study as well as the code and pre-trained models to replicate our experiments at: https://github.com/csiro-robotics/deepseagrass