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Researcher profile

Naoya Takeishi

Naoya Takeishi contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningArtificial Intelligencemath.DSastro-ph.EPastro-ph.IMComputational Engineering, Finance, and ScienceComputer Visionmath.NAMultiagent SystemsNeural and Evolutionary ComputingNumerical AnalysisSocial and Information Networks

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Published work

6 published item(s)

preprint2026arXiv

Deterministic Decomposition of Stochastic Generative Dynamics

Modern generative models can be understood as probability transport from a simple base distribution to a target data distribution. Deterministic transport models offer tractable velocity-field parameterizations, whereas stochastic generative models capture richer density evolution through drift and diffusion. Yet when stochastic dynamics are described through deterministic velocity fields, the effects of drift and diffusion are often compressed into a single effective field, obscuring the distinct roles of deterministic evolution and stochastic fluctuation. In this work, we show that the deterministic field \(b_t\) of a stochastic generative process admits a natural transport--osmotic decomposition that separates deterministic transport from stochastic, diffusion-induced effects: \(b_t = u_t + d_t\), where \(u_t\) governs marginal probability transport and \(d_t\) captures an osmotic effect induced by diffusion and determined by the marginal score. Based on this decomposition, we propose Bridge Matching, a flow-based framework for learning decomposed generative dynamics through both marginal and conditional formulations. In generative modeling experiments, we recombine the learned components as \(b_t = u_t + λ_d d_t\), showing that the proposed decomposition enables interpretable and controllable sampling by adjusting the osmotic contribution in probability transport.

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preprint2026arXiv

M$^3$: Reframing Training Measures for Discretized Physical Simulations

Neural surrogate models for physical simulations are trained on discretized samples of continuous domains, where the induced empirical measure leads to uneven supervision, biasing optimization and causing spatial inconsistencies in physical fidelity. To mitigate this measure-induced bias, we propose M$^3$ (Multi-scale Morton Measure), a scalable framework that balances training measures by partitioning space according to physical variation and allocating supervision across multiple scales. Applied to three industrial-scale datasets with diverse discretizations, M$^3$ consistently improves predictions in the continuous physical domain, achieving up to 4.7$\times$ lower error in large-scale volumetric cases. These gains persist under aggressive subsampling (160M $\rightarrow$ 16M $\rightarrow$ 1.6M points), where M$^3$-trained models outperform those trained on higher-resolution data, reducing physics-weighted relative $L_2$ error by 3--4$\times$ and the corresponding MSE by up to 13$\times$. These results highlight data distribution as a key factor in operator learning and position M$^3$ as a scalable, data-efficient approach for physically consistent modeling.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Asteroid Flyby Cycler Trajectory Design Using Deep Neural Networks

Asteroid exploration has been attracting more attention in recent years. Nevertheless, we have just visited tens of asteroids while we have discovered more than one million bodies. As our current observation and knowledge should be biased, it is essential to explore multiple asteroids directly to better understand the remains of planetary building materials. One of the mission design solutions is utilizing asteroid flyby cycler trajectories with multiple Earth gravity assists. An asteroid flyby cycler trajectory design problem is a subclass of global trajectory optimization problems with multiple flybys, involving a trajectory optimization problem for a given flyby sequence and a combinatorial optimization problem to decide the sequence of the flybys. As the number of flyby bodies grows, the computation time of this optimization problem expands maliciously. This paper presents a new method to design asteroid flyby cycler trajectories utilizing a surrogate model constructed by deep neural networks approximating trajectory optimization results. Since one of the bottlenecks of machine learning approaches is the computation time to generate massive trajectory databases, we propose an efficient database generation strategy by introducing pseudo-asteroids satisfying the Karush-Kuhn-Tucker conditions. The numerical result applied to JAXA's DESTINY+ mission shows that the proposed method is practically applicable to space mission design and can significantly reduce the computational time for searching asteroid flyby sequences.

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preprint2021arXiv

Discriminant Dynamic Mode Decomposition for Labeled Spatio-Temporal Data Collections

Extracting coherent patterns is one of the standard approaches towards understanding spatio-temporal data. Dynamic mode decomposition (DMD) is a powerful tool for extracting coherent patterns, but the original DMD and most of its variants do not consider label information, which is often available as side information of spatio-temporal data. In this work, we propose a new method for extracting distinctive coherent patterns from labeled spatio-temporal data collections, such that they contribute to major differences in a labeled set of dynamics. We achieve such pattern extraction by incorporating discriminant analysis into DMD. To this end, we define a kernel function on subspaces spanned by sets of dynamic modes and develop an objective to take both reconstruction goodness as DMD and class-separation goodness as discriminant analysis into account. We illustrate our method using a synthetic dataset and several real-world datasets. The proposed method can be a useful tool for exploratory data analysis for understanding spatio-temporal data.

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preprint2020arXiv

Physically-interpretable classification of biological network dynamics for complex collective motions

Understanding biological network dynamics is a fundamental issue in various scientific and engineering fields. Network theory is capable of revealing the relationship between elements and their propagation; however, for complex collective motions, the network properties often transiently and complexly change. A fundamental question addressed here pertains to the classification of collective motion network based on physically-interpretable dynamical properties. Here we apply a data-driven spectral analysis called graph dynamic mode decomposition, which obtains the dynamical properties for collective motion classification. Using a ballgame as an example, we classified the strategic collective motions in different global behaviours and discovered that, in addition to the physical properties, the contextual node information was critical for classification. Furthermore, we discovered the label-specific stronger spectra in the relationship among the nearest agents, providing physical and semantic interpretations. Our approach contributes to the understanding of principles of biological complex network dynamics from the perspective of nonlinear dynamical systems.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Shapley Values of Reconstruction Errors of PCA for Explaining Anomaly Detection

We present a method to compute the Shapley values of reconstruction errors of principal component analysis (PCA), which is particularly useful in explaining the results of anomaly detection based on PCA. Because features are usually correlated when PCA-based anomaly detection is applied, care must be taken in computing a value function for the Shapley values. We utilize the probabilistic view of PCA, particularly its conditional distribution, to exactly compute a value function for the Shapely values. We also present numerical examples, which imply that the Shapley values are advantageous for explaining detected anomalies than raw reconstruction errors of each feature.

0 citations0 reviewsNo code linkedOpen access