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Researcher profile

Naoto Yokoya

Naoto Yokoya contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computer Visioneess.IVArtificial IntelligenceMachine LearningComputation and LanguageComputational Engineering, Finance, and Scienceeess.SP

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Published work

18 published item(s)

preprint2026arXiv

Can LLM Agents Respond to Disasters? Benchmarking Heterogeneous Geospatial Reasoning in Emergency Operations

Operational disaster response goes beyond damage assessment, requiring responders to integrate multi-sensor signals, reason over road networks, populations and key facilities, plan evacuations, and produce actionable reports. However, prior work largely isolates remote-sensing perception or evaluates generic tool use, leaving the end-to-end workflows of emergency operations underexplored. In this paper, we introduce Disaster Operational Response Agent benchmark (DORA), the first agentic benchmark for end-to-end disaster response: 515 expert-authored tasks across 45 real-world disaster events spanning 10 types, paired with expert-verified, replayable gold trajectories totaling 3,500 tool-call steps. Tasks span five dimensions that cover the operational disaster-response pipeline: disaster perception, spatial relational analysis, rescue and evacuation planning, temporal evolution reasoning, and multi-modal report synthesis. Agents compose calls from a 108-tool MCP library over heterogeneous geospatial data: optical, SAR, and multi-spectral imagery across single-, bi-, and multi-temporal sequences (0.015-10m GSD), complemented by elevation and social vector layers. We comprehensively evaluate 13 frontier LLMs on our benchmark, revealing three persistent challenges: 1) disaster-domain grounding exposes unique failure modes (damage-semantic grounding, sensor-modality mismatch, and disaster-pipeline composition); 2) agents are doubly bottlenecked by tool selection and argument grounding, where gold tool-order hints improve accuracy by only 1.08-4.40%, and alternative scaffolds yield at most a 3.24% gain; 3) compositional fragility scales with trajectory length, the agent-to-gold gap widening from 7% to 56% on long pipelines. DORA establishes a rigorous testbed for operationally reliable disaster-response agents.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Proteo-R1: Reasoning Foundation Models for De Novo Protein Design

Deep learning in \emph{de novo} protein design has achieved atomic-level fidelity. However, existing models remain largely non-deliberative: they directly synthesize molecular geometries without explicitly reasoning about which residues or interactions are functionally essential. As a result, design decisions are entangled with continuous sampling dynamics, limiting interpretability, controllability, and systematic reuse of biochemical knowledge. We introduce \textbf{Proteo-R1}, a reasoning-guided protein design framework that explicitly decouples \emph{molecular understanding} from \emph{geometric generation}. Proteo-R1 adopts a dual-expert architecture in which a multimodal large language model (MLLM) serves as an \emph{understanding expert}, analyzing protein sequences, structures, and textual context to identify key functional residues that govern binding and specificity. These residue-level decisions are then passed as hard constraints to a separate diffusion-based \emph{generation expert}, which performs conditional co-design while respecting the fixed interaction anchors. This factorization mirrors how human experts approach molecular engineering: first, reasoning about critical interactions, then optimizing geometry subject to those constraints. By operationalizing reasoning as explicit residue-level commitments rather than latent textual guidance, Proteo-R1 achieves stable, interpretable, and modular integration of LLM reasoning with state-of-the-art geometric generative models. Code, data, and demos are available at https://smiles724.github.io/r1/.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

The Confidence Dichotomy: Analyzing and Mitigating Miscalibration in Tool-Use Agents

Autonomous agents based on large language models (LLMs) are rapidly evolving to handle multi-turn tasks, but ensuring their trustworthiness remains a critical challenge. A fundamental pillar of this trustworthiness is calibration, which refers to an agent's ability to express confidence that reliably reflects its actual performance. While calibration is well-established for static models, its dynamics in tool-integrated agentic workflows remain underexplored. In this work, we systematically investigate verbalized calibration in tool-use agents, revealing a fundamental confidence dichotomy driven by tool type. Specifically, our pilot study identifies that evidence tools (e.g., web search) systematically induce severe overconfidence due to inherent noise in retrieved information, while verification tools (e.g., code interpreters) can ground reasoning through deterministic feedback and mitigate miscalibration. To robustly improve calibration across tool types, we propose a reinforcement learning (RL) fine-tuning framework that jointly optimizes task accuracy and calibration, supported by a holistic benchmark of reward designs. We demonstrate that our trained agents not only achieve superior calibration but also exhibit robust generalization from local training environments to noisy web settings and to distinct domains such as mathematical reasoning. Our results highlight the necessity of domain-specific calibration strategies for tool-use agents. More broadly, this work establishes a foundation for building self-aware agents that can reliably communicate uncertainty in high-stakes, real-world deployments.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Decoupled-and-Coupled Networks: Self-Supervised Hyperspectral Image Super-Resolution with Subpixel Fusion

Enormous efforts have been recently made to super-resolve hyperspectral (HS) images with the aid of high spatial resolution multispectral (MS) images. Most prior works usually perform the fusion task by means of multifarious pixel-level priors. Yet the intrinsic effects of a large distribution gap between HS-MS data due to differences in the spatial and spectral resolution are less investigated. The gap might be caused by unknown sensor-specific properties or highly-mixed spectral information within one pixel (due to low spatial resolution). To this end, we propose a subpixel-level HS super-resolution framework by devising a novel decoupled-and-coupled network, called DC-Net, to progressively fuse HS-MS information from the pixel- to subpixel-level, from the image- to feature-level. As the name suggests, DC-Net first decouples the input into common (or cross-sensor) and sensor-specific components to eliminate the gap between HS-MS images before further fusion, and then fully blends them by a model-guided coupled spectral unmixing (CSU) net. More significantly, we append a self-supervised learning module behind the CSU net by guaranteeing the material consistency to enhance the detailed appearances of the restored HS product. Extensive experimental results show the superiority of our method both visually and quantitatively and achieve a significant improvement in comparison with the state-of-the-arts. Furthermore, the codes and datasets will be available at https://sites.google.com/view/danfeng-hong for the sake of reproducibility.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

ES6D: A Computation Efficient and Symmetry-Aware 6D Pose Regression Framework

In this paper, a computation efficient regression framework is presented for estimating the 6D pose of rigid objects from a single RGB-D image, which is applicable to handling symmetric objects. This framework is designed in a simple architecture that efficiently extracts point-wise features from RGB-D data using a fully convolutional network, called XYZNet, and directly regresses the 6D pose without any post refinement. In the case of symmetric object, one object has multiple ground-truth poses, and this one-to-many relationship may lead to estimation ambiguity. In order to solve this ambiguity problem, we design a symmetry-invariant pose distance metric, called average (maximum) grouped primitives distance or A(M)GPD. The proposed A(M)GPD loss can make the regression network converge to the correct state, i.e., all minima in the A(M)GPD loss surface are mapped to the correct poses. Extensive experiments on YCB-Video and T-LESS datasets demonstrate the proposed framework's substantially superior performance in top accuracy and low computational cost.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Learning Mutual Modulation for Self-Supervised Cross-Modal Super-Resolution

Self-supervised cross-modal super-resolution (SR) can overcome the difficulty of acquiring paired training data, but is challenging because only low-resolution (LR) source and high-resolution (HR) guide images from different modalities are available. Existing methods utilize pseudo or weak supervision in LR space and thus deliver results that are blurry or not faithful to the source modality. To address this issue, we present a mutual modulation SR (MMSR) model, which tackles the task by a mutual modulation strategy, including a source-to-guide modulation and a guide-to-source modulation. In these modulations, we develop cross-domain adaptive filters to fully exploit cross-modal spatial dependency and help induce the source to emulate the resolution of the guide and induce the guide to mimic the modality characteristics of the source. Moreover, we adopt a cycle consistency constraint to train MMSR in a fully self-supervised manner. Experiments on various tasks demonstrate the state-of-the-art performance of our MMSR.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Interpretable Hyperspectral AI: When Non-Convex Modeling meets Hyperspectral Remote Sensing

Hyperspectral imaging, also known as image spectrometry, is a landmark technique in geoscience and remote sensing (RS). In the past decade, enormous efforts have been made to process and analyze these hyperspectral (HS) products mainly by means of seasoned experts. However, with the ever-growing volume of data, the bulk of costs in manpower and material resources poses new challenges on reducing the burden of manual labor and improving efficiency. For this reason, it is, therefore, urgent to develop more intelligent and automatic approaches for various HS RS applications. Machine learning (ML) tools with convex optimization have successfully undertaken the tasks of numerous artificial intelligence (AI)-related applications. However, their ability in handling complex practical problems remains limited, particularly for HS data, due to the effects of various spectral variabilities in the process of HS imaging and the complexity and redundancy of higher dimensional HS signals. Compared to the convex models, non-convex modeling, which is capable of characterizing more complex real scenes and providing the model interpretability technically and theoretically, has been proven to be a feasible solution to reduce the gap between challenging HS vision tasks and currently advanced intelligent data processing models.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Breaking the Limits of Remote Sensing by Simulation and Deep Learning for Flood and Debris Flow Mapping

We propose a framework that estimates inundation depth (maximum water level) and debris-flow-induced topographic deformation from remote sensing imagery by integrating deep learning and numerical simulation. A water and debris flow simulator generates training data for various artificial disaster scenarios. We show that regression models based on Attention U-Net and LinkNet architectures trained on such synthetic data can predict the maximum water level and topographic deformation from a remote sensing-derived change detection map and a digital elevation model. The proposed framework has an inpainting capability, thus mitigating the false negatives that are inevitable in remote sensing image analysis. Our framework breaks the limits of remote sensing and enables rapid estimation of inundation depth and topographic deformation, essential information for emergency response, including rescue and relief activities. We conduct experiments with both synthetic and real data for two disaster events that caused simultaneous flooding and debris flows and demonstrate the effectiveness of our approach quantitatively and qualitatively.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Fast Hyperspectral Image Recovery via Non-iterative Fusion of Dual-Camera Compressive Hyperspectral Imaging

Coded aperture snapshot spectral imaging (CASSI) is a promising technique to capture the three-dimensional hyperspectral image (HSI) using a single coded two-dimensional (2D) measurement, in which algorithms are used to perform the inverse problem. Due to the ill-posed nature, various regularizers have been exploited to reconstruct the 3D data from the 2D measurement. Unfortunately, the accuracy and computational complexity are unsatisfied. One feasible solution is to utilize additional information such as the RGB measurement in CASSI. Considering the combined CASSI and RGB measurement, in this paper, we propose a new fusion model for the HSI reconstruction. We investigate the spectral low-rank property of HSI composed of a spectral basis and spatial coefficients. Specifically, the RGB measurement is utilized to estimate the coefficients, meanwhile the CASSI measurement is adopted to provide the orthogonal spectral basis. We further propose a patch processing strategy to enhance the spectral low-rank property of HSI. The proposed model neither requires non-local processing or iteration, nor the spectral sensing matrix of the RGB detector. Extensive experiments on both simulated and real HSI dataset demonstrate that our proposed method outperforms previous state-of-the-art not only in quality but also speeds up the reconstruction more than 5000 times.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Guided Deep Decoder: Unsupervised Image Pair Fusion

The fusion of input and guidance images that have a tradeoff in their information (e.g., hyperspectral and RGB image fusion or pansharpening) can be interpreted as one general problem. However, previous studies applied a task-specific handcrafted prior and did not address the problems with a unified approach. To address this limitation, in this study, we propose a guided deep decoder network as a general prior. The proposed network is composed of an encoder-decoder network that exploits multi-scale features of a guidance image and a deep decoder network that generates an output image. The two networks are connected by feature refinement units to embed the multi-scale features of the guidance image into the deep decoder network. The proposed network allows the network parameters to be optimized in an unsupervised way without training data. Our results show that the proposed network can achieve state-of-the-art performance in various image fusion problems.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Hyperspectral Super-Resolution via Coupled Tensor Ring Factorization

Hyperspectral super-resolution (HSR) fuses a low-resolution hyperspectral image (HSI) and a high-resolution multispectral image (MSI) to obtain a high-resolution HSI (HR-HSI). In this paper, we propose a new model, named coupled tensor ring factorization (CTRF), for HSR. The proposed CTRF approach simultaneously learns high spectral resolution core tensor from the HSI and high spatial resolution core tensors from the MSI, and reconstructs the HR-HSI via tensor ring (TR) representation (Figure~\ref{fig:framework}). The CTRF model can separately exploit the low-rank property of each class (Section \ref{sec:analysis}), which has been never explored in the previous coupled tensor model. Meanwhile, it inherits the simple representation of coupled matrix/CP factorization and flexible low-rank exploration of coupled Tucker factorization. Guided by Theorem~\ref{th:1}, we further propose a spectral nuclear norm regularization to explore the global spectral low-rank property. The experiments have demonstrated the advantage of the proposed nuclear norm regularized CTRF (NCTRF) as compared to previous matrix/tensor and deep learning methods.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Illumination invariant hyperspectral image unmixing based on a digital surface model

Although many spectral unmixing models have been developed to address spectral variability caused by variable incident illuminations, the mechanism of the spectral variability is still unclear. This paper proposes an unmixing model, named illumination invariant spectral unmixing (IISU). IISU makes the first attempt to use the radiance hyperspectral data and a LiDAR-derived digital surface model (DSM) in order to physically explain variable illuminations and shadows in the unmixing framework. Incident angles, sky factors, visibility from the sun derived from the LiDAR-derived DSM support the explicit explanation of endmember variability in the unmixing process from radiance perspective. The proposed model was efficiently solved by a straightforward optimization procedure. The unmixing results showed that the other state-of-the-art unmixing models did not work well especially in the shaded pixels. On the other hand, the proposed model estimated more accurate abundances and shadow compensated reflectance than the existing models.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Joint and Progressive Subspace Analysis (JPSA) with Spatial-Spectral Manifold Alignment for Semi-Supervised Hyperspectral Dimensionality Reduction

Conventional nonlinear subspace learning techniques (e.g., manifold learning) usually introduce some drawbacks in explainability (explicit mapping) and cost-effectiveness (linearization), generalization capability (out-of-sample), and representability (spatial-spectral discrimination). To overcome these shortcomings, a novel linearized subspace analysis technique with spatial-spectral manifold alignment is developed for a semi-supervised hyperspectral dimensionality reduction (HDR), called joint and progressive subspace analysis (JPSA). The JPSA learns a high-level, semantically meaningful, joint spatial-spectral feature representation from hyperspectral data by 1) jointly learning latent subspaces and a linear classifier to find an effective projection direction favorable for classification; 2) progressively searching several intermediate states of subspaces to approach an optimal mapping from the original space to a potential more discriminative subspace; 3) spatially and spectrally aligning manifold structure in each learned latent subspace in order to preserve the same or similar topological property between the compressed data and the original data. A simple but effective classifier, i.e., nearest neighbor (NN), is explored as a potential application for validating the algorithm performance of different HDR approaches. Extensive experiments are conducted to demonstrate the superiority and effectiveness of the proposed JPSA on two widely-used hyperspectral datasets: Indian Pines (92.98\%) and the University of Houston (86.09\%) in comparison with previous state-of-the-art HDR methods. The demo of this basic work (i.e., ECCV2018) is openly available at https://github.com/danfenghong/ECCV2018_J-Play.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Learning Convolutional Sparse Coding on Complex Domain for Interferometric Phase Restoration

Interferometric phase restoration has been investigated for decades and most of the state-of-the-art methods have achieved promising performances for InSAR phase restoration. These methods generally follow the nonlocal filtering processing chain aiming at circumventing the staircase effect and preserving the details of phase variations. In this paper, we propose an alternative approach for InSAR phase restoration, i.e. Complex Convolutional Sparse Coding (ComCSC) and its gradient regularized version. To our best knowledge, this is the first time that we solve the InSAR phase restoration problem in a deconvolutional fashion. The proposed methods can not only suppress interferometric phase noise, but also avoid the staircase effect and preserve the details. Furthermore, they provide an insight of the elementary phase components for the interferometric phases. The experimental results on synthetic and realistic high- and medium-resolution datasets from TerraSAR-X StripMap and Sentinel-1 interferometric wide swath mode, respectively, show that our method outperforms those previous state-of-the-art methods based on nonlocal InSAR filters, particularly the state-of-the-art method: InSAR-BM3D. The source code of this paper will be made publicly available for reproducible research inside the community.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Learning from Multimodal and Multitemporal Earth Observation Data for Building Damage Mapping

Earth observation technologies, such as optical imaging and synthetic aperture radar (SAR), provide excellent means to monitor ever-growing urban environments continuously. Notably, in the case of large-scale disasters (e.g., tsunamis and earthquakes), in which a response is highly time-critical, images from both data modalities can complement each other to accurately convey the full damage condition in the disaster's aftermath. However, due to several factors, such as weather and satellite coverage, it is often uncertain which data modality will be the first available for rapid disaster response efforts. Hence, novel methodologies that can utilize all accessible EO datasets are essential for disaster management. In this study, we have developed a global multisensor and multitemporal dataset for building damage mapping. We included building damage characteristics from three disaster types, namely, earthquakes, tsunamis, and typhoons, and considered three building damage categories. The global dataset contains high-resolution optical imagery and high-to-moderate-resolution multiband SAR data acquired before and after each disaster. Using this comprehensive dataset, we analyzed five data modality scenarios for damage mapping: single-mode (optical and SAR datasets), cross-modal (pre-disaster optical and post-disaster SAR datasets), and mode fusion scenarios. We defined a damage mapping framework for the semantic segmentation of damaged buildings based on a deep convolutional neural network algorithm. We compare our approach to another state-of-the-art baseline model for damage mapping. The results indicated that our dataset, together with a deep learning network, enabled acceptable predictions for all the data modality scenarios.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Learning Shared Cross-modality Representation Using Multispectral-LiDAR and Hyperspectral Data

Due to the ever-growing diversity of the data source, multi-modality feature learning has attracted more and more attention. However, most of these methods are designed by jointly learning feature representation from multi-modalities that exist in both training and test sets, yet they are less investigated in absence of certain modality in the test phase. To this end, in this letter, we propose to learn a shared feature space across multi-modalities in the training process. By this way, the out-of-sample from any of multi-modalities can be directly projected onto the learned space for a more effective cross-modality representation. More significantly, the shared space is regarded as a latent subspace in our proposed method, which connects the original multi-modal samples with label information to further improve the feature discrimination. Experiments are conducted on the multispectral-Lidar and hyperspectral dataset provided by the 2018 IEEE GRSS Data Fusion Contest to demonstrate the effectiveness and superiority of the proposed method in comparison with several popular baselines.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

More Diverse Means Better: Multimodal Deep Learning Meets Remote Sensing Imagery Classification

Classification and identification of the materials lying over or beneath the Earth's surface have long been a fundamental but challenging research topic in geoscience and remote sensing (RS) and have garnered a growing concern owing to the recent advancements of deep learning techniques. Although deep networks have been successfully applied in single-modality-dominated classification tasks, yet their performance inevitably meets the bottleneck in complex scenes that need to be finely classified, due to the limitation of information diversity. In this work, we provide a baseline solution to the aforementioned difficulty by developing a general multimodal deep learning (MDL) framework. In particular, we also investigate a special case of multi-modality learning (MML) -- cross-modality learning (CML) that exists widely in RS image classification applications. By focusing on "what", "where", and "how" to fuse, we show different fusion strategies as well as how to train deep networks and build the network architecture. Specifically, five fusion architectures are introduced and developed, further being unified in our MDL framework. More significantly, our framework is not only limited to pixel-wise classification tasks but also applicable to spatial information modeling with convolutional neural networks (CNNs). To validate the effectiveness and superiority of the MDL framework, extensive experiments related to the settings of MML and CML are conducted on two different multimodal RS datasets. Furthermore, the codes and datasets will be available at https://github.com/danfenghong/IEEE_TGRS_MDL-RS, contributing to the RS community.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

X-ModalNet: A Semi-Supervised Deep Cross-Modal Network for Classification of Remote Sensing Data

This paper addresses the problem of semi-supervised transfer learning with limited cross-modality data in remote sensing. A large amount of multi-modal earth observation images, such as multispectral imagery (MSI) or synthetic aperture radar (SAR) data, are openly available on a global scale, enabling parsing global urban scenes through remote sensing imagery. However, their ability in identifying materials (pixel-wise classification) remains limited, due to the noisy collection environment and poor discriminative information as well as limited number of well-annotated training images. To this end, we propose a novel cross-modal deep-learning framework, called X-ModalNet, with three well-designed modules: self-adversarial module, interactive learning module, and label propagation module, by learning to transfer more discriminative information from a small-scale hyperspectral image (HSI) into the classification task using a large-scale MSI or SAR data. Significantly, X-ModalNet generalizes well, owing to propagating labels on an updatable graph constructed by high-level features on the top of the network, yielding semi-supervised cross-modality learning. We evaluate X-ModalNet on two multi-modal remote sensing datasets (HSI-MSI and HSI-SAR) and achieve a significant improvement in comparison with several state-of-the-art methods.

0 citations0 reviewsNo code linkedOpen access