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Researcher profile

Maximilian Puelma Touzel

Maximilian Puelma Touzel contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Artificial IntelligenceGenomicsMachine Learningmath.DSMultiagent Systemsnlin.CD

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Published work

3 published item(s)

preprint2026arXiv

The $\textit{Silicon Society}$ Cookbook: Design Space of LLM-based Social Simulations

Studies attempting to simulate human behavior with $\textit{Silicon Societies}$ grow in numbers while LLM-only social networks have started appearing outside of controlled settings. However, the design space of these networks remains under-studied, which contributes to a gap in validating model realism. To enable future works to make more informed design decisions, we perform a systematic analysis of the consequences and interactions of key design choices in simulated social networks, including the choice of base model used to model individual agents, and how they are connected to each other. Using surveys as a proxy for agent opinions, our findings suggest that the geometry of the design space is non-trivial, with some parameters behaving in additive ways while others display more complex interactions. In particular, the choice of the base LLM is the most important variable impacting the simulation outcomes.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

NoisET: Noise learning and Expansion detection of T-cell receptors

High-throughput sequencing of T- and B-cell receptors makes it possible to track immune repertoires across time, in different tissues, in acute and chronic diseases and in healthy individuals. However quantitative comparison between repertoires is confounded by variability in the read count of each receptor clonotype due to sampling, library preparation, and expression noise. We review methods for accounting for both biological and experimental noise and present an easy-to-use python package NoisET that implements and generalizes a previously developed Bayesian method. It can be used to learn experimental noise models for repertoire sequencing from replicates, and to detect responding clones following a stimulus. We test the package on different repertoire sequencing technologies and datasets. We review how such approaches have been used to identify responding clonotypes in vaccination and disease data. Availability: NoisET is freely available to use with source code at github.com/statbiophys/NoisET.

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preprint2020arXiv

On Lyapunov Exponents for RNNs: Understanding Information Propagation Using Dynamical Systems Tools

Recurrent neural networks (RNNs) have been successfully applied to a variety of problems involving sequential data, but their optimization is sensitive to parameter initialization, architecture, and optimizer hyperparameters. Considering RNNs as dynamical systems, a natural way to capture stability, i.e., the growth and decay over long iterates, are the Lyapunov Exponents (LEs), which form the Lyapunov spectrum. The LEs have a bearing on stability of RNN training dynamics because forward propagation of information is related to the backward propagation of error gradients. LEs measure the asymptotic rates of expansion and contraction of nonlinear system trajectories, and generalize stability analysis to the time-varying attractors structuring the non-autonomous dynamics of data-driven RNNs. As a tool to understand and exploit stability of training dynamics, the Lyapunov spectrum fills an existing gap between prescriptive mathematical approaches of limited scope and computationally-expensive empirical approaches. To leverage this tool, we implement an efficient way to compute LEs for RNNs during training, discuss the aspects specific to standard RNN architectures driven by typical sequential datasets, and show that the Lyapunov spectrum can serve as a robust readout of training stability across hyperparameters. With this exposition-oriented contribution, we hope to draw attention to this understudied, but theoretically grounded tool for understanding training stability in RNNs.

0 citations0 reviewsNo code linkedOpen access