Source author record

Mark Taylor

Mark Taylor appears in the imported research catalog. Authorship, coauthor and topic links are available while profile ownership is still unclaimed.

ResearcherUnclaimed source record

Catalog footprint

What is connected

13works
5topics
4close collaborators

Actions

Connect this record

Log in to claim

Research graph

See the researcher in context

Open full explorer

Inspect adjacent papers, topics, institutions and collaborators without losing the researcher page.

Building this map preview

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Published work

13 published item(s)

preprint2026arXiv

Kinetics of Mycoprotein Production from Alternative Carbon Substrates

High throughput screening was used to study of the biokinetics of F. venenatum A3/5 cultivation on alternative carbon substrates, including monosaccharides, disaccharides and mixtures relevant to food & beverage, dairy and agricultural waste streams. Expired functional drink from the beverage sector was also assessed as the primary carbon source for mycoprotein production. Growth data was analysed using modified single and multiphase Gompertz models for comparison of maximum specific growth rate and progression milestones across diverse growth regimes. Time-series substrate and byproduct data was analysed using comparative metrics, providing an explanatory basis for the different growth phenotypes observed. Substrate type strongly influenced the apparent carbon allocation strategies, with rapidly consumed sugars such as glucose and sucrose supporting high growth rates, low biomass yield and a high degree of fermentative byproduct formation. Fructose and xylose cultivations led to slower overall growth but higher biomass yield and lower byproduct formation. Galactose and lactose showed distinct dynamics that suggested co-existence of transport and metabolic induction limitations. In all dual-substrate systems, sequential utilisation was observed. However, metabolic inheritance and environmental shift effects were highlighted as potential kinetic limitations. These conditions exhibited stunted diauxic growth and low yield from secondary sugars, with glucose-dominated primary growth significantly reshaping secondary substrate efficiencies relative to their study in silo. The expired functional drink supported highly rapid growth and achieved the highest maximum specific growth rate and biomass titre of all conditions examined, alongside reduced fermentative overflow and enhanced ethanol reassimilation relative to a compositionally matched synthetic control.

preprint2022arXiv

Thermodynamically consistent versions of approximations used in modelling moist air

Some existing approaches to modeling the thermodynamics of moist air make approximations that break $\textit{thermodynamic consistency}$, such that the resulting thermodynamics do not obey the 1st and 2nd laws or have other inconsistencies. Recently, an approach to avoid such inconsistency has been suggested: the use of $\textit{thermodynamic potentials}$ in terms of their $\textit{natural variables}$, from which all thermodynamic quantities and relationships are derived. In this paper, we develop this approach for $\textit{unapproximated}$ moist air thermodynamics and two widely used approximations: the constant $κ$ approximation and the dry heat capacities approximation. The consistent constant $κ$ approximation is particularly attractive because it leads to, when using virtual potential temperature $θ_v$ as the thermodynamic variable, adiabatic dynamics that depend only on total mass, independent of the breakdown between water forms. Additionally, a wide variety of material from different sources in the literature on thermodynamics in atmospheric modelling is brought together. It is hoped that this paper provides a comprehensive reference for the use of thermodynamic potentials in atmospheric modelling, especially for the three systems considered here.

preprint2021arXiv

Spreading the word -- current status of VO tutorials and schools

With some telescopes standing still, now more than ever simple access to archival data is vital for astronomers and they need to know how to go about it. Within European Virtual Observatory (VO) projects, such as AIDA (2008-2010), ICE (2010-2012), CoSADIE (2013-2015), ASTERICS (2015-2018) and ESCAPE (since 2019), we have been offering Virtual Observatory schools for many years. The aim of these schools are twofold: teaching (early career) researchers about the functionalities and possibilities within the Virtual Observatory and collecting feedback from the astronomical community. In addition to the VO schools on the European level, different national teams have also put effort into VO dissemination. The team at the Centre de Données astronomiques de Strasbourg (CDS) started to explore more and new ways to interact with the community: a series of blog posts on AstroBetter.com or a lunch time session at the virtual EAS meeting 2020. The Spanish VO has conducted virtual VO schools. GAVO has supported online archive workshops and maintains their Virtual Observatory Text Treasures. In this paper, we present the different formats in more detail, and report on the resulting interaction with the community as well as the estimated reach.

preprint2016arXiv

Astrophysics Source Code Library: Here we grow again!

The Astrophysics Source Code Library (ASCL) is a free online registry of research codes; it is indexed by ADS and Web of Science and has over 1300 code entries. Its entries are increasingly used to cite software; citations have been doubling each year since 2012 and every major astronomy journal accepts citations to the ASCL. Codes in the resource cover all aspects of astrophysics research and many programming languages are represented. In the past year, the ASCL added dashboards for users and administrators, started minting Digital Objective Identifiers (DOIs) for software it houses, and added metadata fields requested by users. This presentation covers the ASCL's growth in the past year and the opportunities afforded it as one of the few domain libraries for science research codes.

preprint2016arXiv

Implementing Ideas for Improving Software Citation and Credit

Improving software citation and credit continues to be a topic of interest across and within many disciplines, with numerous efforts underway. In this Birds of a Feather (BoF) session, we started with a list of actionable ideas from last year's BoF and other similar efforts and worked alone or in small groups to begin implementing them. Work was captured in a common Google document; the session organizers will disseminate or otherwise put this information to use in or for the community in collaboration with those who contributed.

preprint2015arXiv

Client Interfaces to the Virtual Observatory Registry

The Virtual Observatory Registry is a distributed directory of information systems and other resources relevant to astronomy. To make it useful, facilities to query that directory must be provided to humans and machines alike. This article reviews the development and status of such facilities, also considering the lessons learnt from about a decade of experience with Registry interfaces. After a brief outline of the history of the standards development, it describes the use of Registry interfaces in some popular clients as well as dedicated UIs for interrogating the Registry. It continues with a thorough discussion of the design of the two most recent Registry interface standards, RegTAP on the one hand and a full-text-based interface on the other hand. The article finally lays out some of the less obvious conventions that emerged in the interaction between providers of registry records and Registry users as well as remaining challenges and current developments.

preprint2015arXiv

Improving Software Citation and Credit

The past year has seen movement on several fronts for improving software citation, including the Center for Open Science's Transparency and Openness Promotion (TOP) Guidelines, the Software Publishing Special Interest Group that was started at January's AAS meeting in Seattle at the request of that organization's Working Group on Astronomical Software, a Sloan-sponsored meeting at GitHub in San Francisco to begin work on a cohesive research software citation-enabling platform, the work of Force11 to "transform and improve" research communication, and WSSSPE's ongoing efforts that include software publication, citation, credit, and sustainability. Brief reports on these efforts were shared at the BoF, after which participants discussed ideas for improving software citation, generating a list of recommendations to the community of software authors, journal publishers, ADS, and research authors. The discussion, recommendations, and feedback will help form recommendations for software citation to those publishers represented in the Software Publishing Special Interest Group and the broader community.

preprint2015arXiv

TOPCAT's TAP Client

TAP, the Table Access Protocol, is a Virtual Observatory (VO) protocol for executing queries in remote relational databases using ADQL, an SQL-like query language. It is one of the most powerful components of the VO, but also one of the most complex to use, with an extensive stack of associated standards. We present here recent improvements to the client and GUI for interacting with TAP services from the TOPCAT table analysis tool. As well as managing query submission and result retrieval, the GUI attempts to provide the user with as much help as possible in locating services, understanding service metadata and capabilities, and constructing correct and useful ADQL queries. The implementation and design are, unlike previous versions, both usable and performant even for the largest TAP services.

preprint2014arXiv

Astrophysics Source Code Library Enhancements

The Astrophysics Source Code Library (ASCL; ascl.net) is a free online registry of codes used in astronomy research; it currently contains over 900 codes and is indexed by ADS. The ASCL has recently moved a new infrastructure into production. The new site provides a true database for the code entries and integrates the WordPress news and information pages and the discussion forum into one site. Previous capabilities are retained and permalinks to ascl.net continue to work. This improvement offers more functionality and flexibility than the previous site, is easier to maintain, and offers new possibilities for collaboration. This presentation covers these recent changes to the ASCL.

preprint2014arXiv

Visualising Large Datasets in TOPCAT v4

TOPCAT is a widely used desktop application for manipulation of astronomical catalogues and other tables, which has long provided fast interactive visualisation features including 1, 2 and 3-d plots, multiple datasets, linked views, color coding, transparency and more. In Version 4 a new plotting library has been written from scratch to deliver new and enhanced visualisation capabilities. This paper describes some of the considerations in the design and implementation, particularly in regard to providing comprehensible interactive visualisation for multi-million point datasets.

preprint2013arXiv

Ideas for Advancing Code Sharing (A Different Kind of Hack Day)

How do we as a community encourage the reuse of software for telescope operations, data processing, and calibration? How can we support making codes used in research available for others to examine? Continuing the discussion from last year Bring out your codes! BoF session, participants separated into groups to brainstorm ideas to mitigate factors which inhibit code sharing and nurture those which encourage code sharing. The BoF concluded with the sharing of ideas that arose from the brainstorming sessions and a brief summary by the moderator.

preprint2013arXiv

The Astrophysics Source Code Library: Where do we go from here?

The Astrophysics Source Code Library, started in 1999, has in the past three years grown from a repository for 40 codes to a registry of over 700 codes that are now indexed by ADS. What comes next? We examine the future of the ASCL, the challenges facing it, the rationale behind its practices, and the need to balance what we might do with what we have the resources to accomplish.