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Published work

74 published item(s)

preprint2026arXiv

FED-FSTQ: Fisher-Guided Token Quantization for Communication-Efficient Federated Fine-Tuning of LLMs on Edge Devices

Federated fine-tuning provides a practical route to adapt large language models (LLMs) on edge devices without centralizing private data, yet in mobile deployments the training wall-clock is often bottlenecked by straggler-limited uplink communication under heterogeneous bandwidth and intermittent participation. Although parameter-efficient fine-tuning (PEFT) reduces trainable parameters, per-round payloads remain prohibitive in non-IID regimes, where uniform compression can discard rare but task-critical signals. We propose Fed-FSTQ, a Fisher-guided token quantization system primitive for communication-efficient federated LLM fine-tuning. Fed-FSTQ employs a lightweight Fisher proxy to estimate token sensitivity, coupling importance-aware token selection with non-uniform mixed-precision quantization to allocate higher fidelity to informative evidence while suppressing redundant transmission. The method is model-agnostic, serves as a drop-in module for standard federated PEFT pipelines, e.g., LoRA, without modifying the server aggregation rule, and supports bandwidth-heterogeneous clients via compact sparse message packing. Experiments on multilingual QA and medical QA under non-IID partitions show that Fed-FSTQ reduces cumulative uplink traffic required to reach a fixed quality threshold by 46x relative to a standard LoRA baseline, and improves end-to-end wall-clock time-to-accuracy by 52%. Furthermore, enabling Fisher-guided token reduction at inference yields up to a 1.55x end-to-end speedup on NVIDIA Jetson-class edge devices, demonstrating deployability under tight resource constraints.

preprint2023arXiv

The diagnostic utility of endocytoscopy for the detection of esophageal lesions: a systematic review and meta-analysis

Objective: To systematically evaluate the value of endocytoscopy (ECS) in the diagnosis of early esophageal cancer (EC). Methods: Pubmed, Ovid and EMbase databases were searched to collect diagnostic tests of ECS assisted diagnosis of early EC. The retrieval time was from the establishment of the database to August 2022. Review manager 5.4, Stata 16.0 and Meta-Disc 1.4 were used for meta-analysis after two researchers independently screened literature, extracted data and evaluated the bias risk of included studies. Results: A total of 7 studies were included, including 520 lesions. Meta-analysis results showed that the combined sensitivity(SE), specificity(SP), positive likelihood ratio (PLR), negative likelihood ratio (NLR), diagnostic odds ratio (DOR) and positive posterior probability (PPP) of ECS screening for early EC were 0.95[95%CI: 0.84, 0.98], 0.92 [95%CI: 0.83, 0.96], 11.8 [95%CI: 5.3, 26.1], 0.06 [95%CI: 0.02, 0.18], 203 [95%CI: 50, 816], and 75%, respectively. The area (AUC) under the receiver Operating Characteristic curve (SROC) was 0.98[95%CI: 0.96, 0.99]. Conclusions: Current evidence suggests that ECS can be used as an effective screening tool for early EC. Due to the limited number and quality of included studies, it is imperative to conduct more high-quality studies to verify the above conclusions.

preprint2022arXiv

2020 CATARACTS Semantic Segmentation Challenge

Surgical scene segmentation is essential for anatomy and instrument localization which can be further used to assess tissue-instrument interactions during a surgical procedure. In 2017, the Challenge on Automatic Tool Annotation for cataRACT Surgery (CATARACTS) released 50 cataract surgery videos accompanied by instrument usage annotations. These annotations included frame-level instrument presence information. In 2020, we released pixel-wise semantic annotations for anatomy and instruments for 4670 images sampled from 25 videos of the CATARACTS training set. The 2020 CATARACTS Semantic Segmentation Challenge, which was a sub-challenge of the 2020 MICCAI Endoscopic Vision (EndoVis) Challenge, presented three sub-tasks to assess participating solutions on anatomical structure and instrument segmentation. Their performance was assessed on a hidden test set of 531 images from 10 videos of the CATARACTS test set.

preprint2022arXiv

A Flow-based Distributed Trading Mechanism in Regional Electricity Market with Energy Hub

The concept of Energy Hub (EH) has been emerged to accommodate renewable energy sources in a multi-energy system to deploy the synergies between electricity and other energy sources. However, the market mechanisms for the integration of the EHs into the energy markets are not sufficiently elaborated. This paper proposes a flow-based two-level distributed trading mechanism in the regional electricity market with EH. At the lower level, the regional system operator coordinates the regional grids transactions in two markets, the local energy market with EH and the wholesale market of the upstream grid. Every nodal agent as an independent stakeholder leverages price discrepancy to cross arbitrage from different markets. At the upper level, the EH is a third player intending to maximize profit from trading in the regional electricity market and gas market. The regional electricity market clearing problem is formulated as a mathematical program with equilibrium constraints, for which we develop an ADMM-based distributed algorithm to obtain the equilibrium solution. The DC power flow is decomposed into optimization problems for the regional system operator and agents at different nodes, which can be solved in a distributed manner to achieve global optimality without violating the privacy of players. Case studies based on a realistic regional grid verify the effectiveness of the proposed algorithm and show that the mechanism is effective in decomposing power flow and increasing energy efficiency.

preprint2022arXiv

Anchor Graph Structure Fusion Hashing for Cross-Modal Similarity Search

Cross-modal hashing still has some challenges needed to address: (1) most existing CMH methods take graphs as input to model data distribution. These methods omit to consider the correlation of graph structure among multiple modalities; (2) most existing CMH methods ignores considering the fusion affinity among multi-modalities data; (3) most existing CMH methods relax the discrete constraints to solve the optimization objective, significantly degrading the retrieval performance. To solve the above limitations, we propose a novel Anchor Graph Structure Fusion Hashing (AGSFH). AGSFH constructs the anchor graph structure fusion matrix from different anchor graphs of multiple modalities with the Hadamard product, which can fully exploit the geometric property of underlying data structure. Based on the anchor graph structure fusion matrix, AGSFH attempts to directly learn an intrinsic anchor graph, where the structure of the intrinsic anchor graph is adaptively tuned so that the number of components of the intrinsic graph is exactly equal to the number of clusters. Besides, AGSFH preserves the anchor fusion affinity into the common binary Hamming space. Furthermore, a discrete optimization framework is designed to learn the unified binary codes. Extensive experimental results on three public social datasets demonstrate the superiority of AGSFH.

preprint2022arXiv

Discrimination-Based Double Auction for Maximizing Social Welfare in the Electricity and Heating Market Considering Privacy Preservation

This paper proposes a doubled-sided auction mechanism with price discrimination for social welfare (SW) maximization in the electricity and heating market. In this mechanism, energy service providers (ESPs) submit offers and load aggregators (LAs) submit bids to an energy trading center (ETC) to maximize their utility; in turn, the selfless ETC as an auctioneer leverages dis-criminatory price weights to regulate the behaviors of ESPs and LAs, which combines the individual benefits of each stakeholder with the overall social welfare to achieve the global optimum. Nash games are employed to describe the interactions between players with the same market role. Theoretically, we first prove the existence and uniqueness of the Nash equilibrium; then, considering the requirement of game players to preserve privacy, a distributed algorithm based on the alternating direction method of multipliers is developed to implement distributed bidding and analytical target cascading algorithm is applied to reach the balance of demand and supply. We validated the proposed mechanism using case studies on a city-level distribution system. The results indicated that the achieved SW improved by 4%-15% compared with other mechanisms, and also verified the effectiveness of the distributed algorithm.

preprint2022arXiv

Efficient Argument Structure Extraction with Transfer Learning and Active Learning

The automation of extracting argument structures faces a pair of challenges on (1) encoding long-term contexts to facilitate comprehensive understanding, and (2) improving data efficiency since constructing high-quality argument structures is time-consuming. In this work, we propose a novel context-aware Transformer-based argument structure prediction model which, on five different domains, significantly outperforms models that rely on features or only encode limited contexts. To tackle the difficulty of data annotation, we examine two complementary methods: (i) transfer learning to leverage existing annotated data to boost model performance in a new target domain, and (ii) active learning to strategically identify a small amount of samples for annotation. We further propose model-independent sample acquisition strategies, which can be generalized to diverse domains. With extensive experiments, we show that our simple-yet-effective acquisition strategies yield competitive results against three strong comparisons. Combined with transfer learning, substantial F1 score boost (5-25) can be further achieved during the early iterations of active learning across domains.

preprint2022arXiv

Extensive Study of Multiple Deep Neural Networks for Complex Random Telegraph Signals

Time-fluctuating signals are ubiquitous and diverse in many physical, chemical, and biological systems, among which random telegraph signals (RTSs) refer to a series of instantaneous switching events between two discrete levels from single-particle movements. Reliable RTS analyses are crucial prerequisite to identify underlying mechanisms related to performance sensitivity. When numerous levels partake, complex patterns of multilevel RTSs occur, making their quantitative analysis exponentially difficult, hereby systematic approaches are found elusive. Here, we present a three-step analysis protocol via progressive knowledge-transfer, where the outputs of early step are passed onto a subsequent step. Especially, to quantify complex RTSs, we build three deep neural network architectures that can process temporal data well and demonstrate the model accuracy extensively with a large dataset of different RTS types affected by controlling background noise size. Our protocol offers structured schemes to quantify complex RTSs from which meaningful interpretation and inference can ensue.

preprint2022arXiv

HIBRIDS: Attention with Hierarchical Biases for Structure-aware Long Document Summarization

Document structure is critical for efficient information consumption. However, it is challenging to encode it efficiently into the modern Transformer architecture. In this work, we present HIBRIDS, which injects Hierarchical Biases foR Incorporating Document Structure into the calculation of attention scores. We further present a new task, hierarchical question-summary generation, for summarizing salient content in the source document into a hierarchy of questions and summaries, where each follow-up question inquires about the content of its parent question-summary pair. We also annotate a new dataset with 6,153 question-summary hierarchies labeled on long government reports. Experiment results show that our model produces better question-summary hierarchies than comparisons on both hierarchy quality and content coverage, a finding also echoed by human judges. Additionally, our model improves the generation of long-form summaries from lengthy government reports and Wikipedia articles, as measured by ROUGE scores.

preprint2022arXiv

Mass Testing and Characterization of 20-inch PMTs for JUNO

Main goal of the JUNO experiment is to determine the neutrino mass ordering using a 20kt liquid-scintillator detector. Its key feature is an excellent energy resolution of at least 3 % at 1 MeV, for which its instruments need to meet a certain quality and thus have to be fully characterized. More than 20,000 20-inch PMTs have been received and assessed by JUNO after a detailed testing program which began in 2017 and elapsed for about four years. Based on this mass characterization and a set of specific requirements, a good quality of all accepted PMTs could be ascertained. This paper presents the performed testing procedure with the designed testing systems as well as the statistical characteristics of all 20-inch PMTs intended to be used in the JUNO experiment, covering more than fifteen performance parameters including the photocathode uniformity. This constitutes the largest sample of 20-inch PMTs ever produced and studied in detail to date, i.e. 15,000 of the newly developed 20-inch MCP-PMTs from Northern Night Vision Technology Co. (NNVT) and 5,000 of dynode PMTs from Hamamatsu Photonics K. K.(HPK).

preprint2022arXiv

Simulating nuclear and electronic quantum effects in enzymes

An accurate treatment of the structures and dynamics that lead to enhanced chemical reactivity in enzymes requires explicit treatment of both electronic and nuclear quantum effects. The former can be captured in ab initio molecular dynamics (AIMD) simulations while the latter can be included by performing ab initio path integral molecular dynamics (AI-PIMD) simulations. Both AIMD and AI-PIMD simulations have traditionally been computationally prohibitive for large enzymatic systems. Recent developments in streaming computer architectures and new algorithms to accelerate path integral simulations now make these simulations practical for biological systems, allowing elucidation of enzymatic reactions in unprecedented detail. In this chapter, we summarize these recent developments and discuss practical considerations for applying AIMD and AI-PIMD simulations to enzymes.

preprint2022arXiv

Spatio-Temporal Coupling Controlled Laser for Electron Acceleration

Limited by the difficulty in acceleration synchronization, it has been a long-term challenge for on-chip dielectric laser-based accelerators (DLA) to bridge the gap between non-relativistic and relativistic regimes. Here, we propose a DLA based on a spatio-temporal coupling (STC) controlled laser pulse, which enables the acceleration of a non-relativistic electron to a sub-MeV level in a single acceleration structure (chirped spatial grating). It provides high precision temporal and spatial tuning of the driving laser via the dispersion manipulation, leading to a synchronous acceleration of the velocity increasing electrons over a large energy range. Additionally, the STC scheme is a general method and can be extended to driving fields of other wavelengths such as terahertz pulses. Our results bring new possibilities to MeV-scale portable electron sources and table-top acceleration experiments.

preprint2022arXiv

Three-Module Modeling For End-to-End Spoken Language Understanding Using Pre-trained DNN-HMM-Based Acoustic-Phonetic Model

In spoken language understanding (SLU), what the user says is converted to his/her intent. Recent work on end-to-end SLU has shown that accuracy can be improved via pre-training approaches. We revisit ideas presented by Lugosch et al. using speech pre-training and three-module modeling; however, to ease construction of the end-to-end SLU model, we use as our phoneme module an open-source acoustic-phonetic model from a DNN-HMM hybrid automatic speech recognition (ASR) system instead of training one from scratch. Hence we fine-tune on speech only for the word module, and we apply multi-target learning (MTL) on the word and intent modules to jointly optimize SLU performance. MTL yields a relative reduction of 40% in intent-classification error rates (from 1.0% to 0.6%). Note that our three-module model is a streaming method. The final outcome of the proposed three-module modeling approach yields an intent accuracy of 99.4% on FluentSpeech, an intent error rate reduction of 50% compared to that of Lugosch et al. Although we focus on real-time streaming methods, we also list non-streaming methods for comparison.

preprint2021arXiv

JUNO Physics and Detector

The Jiangmen Underground Neutrino Observatory (JUNO) is a 20 kton LS detector at 700-m underground. An excellent energy resolution and a large fiducial volume offer exciting opportunities for addressing many important topics in neutrino and astro-particle physics. With 6 years of data, the neutrino mass ordering can be determined at 3-4 sigma and three oscillation parameters can be measured to a precision of 0.6% or better by detecting reactor antineutrinos. With 10 years of data, DSNB could be observed at 3-sigma; a lower limit of the proton lifetime of 8.34e33 years (90% C.L.) can be set by searching for p->nu_bar K^+; detection of solar neutrinos would shed new light on the solar metallicity problem and examine the vacuum-matter transition region. A core-collapse supernova at 10 kpc would lead to ~5000 IBD and ~2000 (300) all-flavor neutrino-proton (electron) scattering events. Geo-neutrinos can be detected with a rate of ~400 events/year. We also summarize the final design of the JUNO detector and the key R&D achievements. All 20-inch PMTs have been tested. The average photon detection efficiency is 28.9% for the 15,000 MCP PMTs and 28.1% for the 5,000 dynode PMTs, higher than the JUNO requirement of 27%. Together with the >20 m attenuation length of LS, we expect a yield of 1345 p.e. per MeV and an effective energy resolution of 3.02%/\sqrt{E (MeV)}$ in simulations. The underwater electronics is designed to have a loss rate <0.5% in 6 years. With degassing membranes and a micro-bubble system, the radon concentration in the 35-kton water pool could be lowered to <10 mBq/m^3. Acrylic panels of radiopurity <0.5 ppt U/Th are produced. The 20-kton LS will be purified onsite. Singles in the fiducial volume can be controlled to ~10 Hz. The JUNO experiment also features a double calorimeter system with 25,600 3-inch PMTs, a LS testing facility OSIRIS, and a near detector TAO.

preprint2021arXiv

MD-MTL: An Ensemble Med-Multi-Task Learning Package for DiseaseScores Prediction and Multi-Level Risk Factor Analysis

While many machine learning methods have been used for medical prediction and risk factor analysis on healthcare data, most prior research has involved single-task learning (STL) methods. However, healthcare research often involves multiple related tasks. For instance, implementation of disease scores prediction and risk factor analysis in multiple subgroups of patients simultaneously and risk factor analysis at multi-levels synchronously. In this paper, we developed a new ensemble machine learning Python package based on multi-task learning (MTL), referred to as the Med-Multi-Task Learning (MD-MTL) package and applied it in predicting disease scores of patients, and in carrying out risk factor analysis on multiple subgroups of patients simultaneously. Our experimental results on two datasets demonstrate the utility of the MD-MTL package, and show the advantage of MTL (vs. STL), when analyzing data that is organized into different categories (tasks, which can be various age groups, different levels of disease severity, etc.).

preprint2020arXiv

A uniqueness theorem for asymptotically cylindrical shrinking Ricci solitons

We prove that a shrinking gradient Ricci soliton which agrees to infinite order at spatial infinity with one of the standard cylindrical metrics on $S^k\times \RR^{n-k}$ for $k\geq 2$ along some end must be isometric to the cylinder on that end. When the underlying manifold is complete, it must be globally isometric either to the cylinder or (when $k=n-1$) to its $\ZZ_2$-quotient.

preprint2020arXiv

Annotation-Efficient Learning for Medical Image Segmentation based on Noisy Pseudo Labels and Adversarial Learning

Despite that deep learning has achieved state-of-the-art performance for medical image segmentation, its success relies on a large set of manually annotated images for training that are expensive to acquire. In this paper, we propose an annotation-efficient learning framework for segmentation tasks that avoids annotations of training images, where we use an improved Cycle-Consistent Generative Adversarial Network (GAN) to learn from a set of unpaired medical images and auxiliary masks obtained either from a shape model or public datasets. We first use the GAN to generate pseudo labels for our training images under the implicit high-level shape constraint represented by a Variational Auto-encoder (VAE)-based discriminator with the help of the auxiliary masks, and build a Discriminator-guided Generator Channel Calibration (DGCC) module which employs our discriminator's feedback to calibrate the generator for better pseudo labels. To learn from the pseudo labels that are noisy, we further introduce a noise-robust iterative learning method using noise-weighted Dice loss. We validated our framework with two situations: objects with a simple shape model like optic disc in fundus images and fetal head in ultrasound images, and complex structures like lung in X-Ray images and liver in CT images. Experimental results demonstrated that 1) Our VAE-based discriminator and DGCC module help to obtain high-quality pseudo labels. 2) Our proposed noise-robust learning method can effectively overcome the effect of noisy pseudo labels. 3) The segmentation performance of our method without using annotations of training images is close or even comparable to that of learning from human annotations.

preprint2020arXiv

Asymmetric Correlation Quantization Hashing for Cross-modal Retrieval

Due to the superiority in similarity computation and database storage for large-scale multiple modalities data, cross-modal hashing methods have attracted extensive attention in similarity retrieval across the heterogeneous modalities. However, there are still some limitations to be further taken into account: (1) most current CMH methods transform real-valued data points into discrete compact binary codes under the binary constraints, limiting the capability of representation for original data on account of abundant loss of information and producing suboptimal hash codes; (2) the discrete binary constraint learning model is hard to solve, where the retrieval performance may greatly reduce by relaxing the binary constraints for large quantization error; (3) handling the learning problem of CMH in a symmetric framework, leading to difficult and complex optimization objective. To address above challenges, in this paper, a novel Asymmetric Correlation Quantization Hashing (ACQH) method is proposed. Specifically, ACQH learns the projection matrixs of heterogeneous modalities data points for transforming query into a low-dimensional real-valued vector in latent semantic space and constructs the stacked compositional quantization embedding in a coarse-to-fine manner for indicating database points by a series of learnt real-valued codeword in the codebook with the help of pointwise label information regression simultaneously. Besides, the unified hash codes across modalities can be directly obtained by the discrete iterative optimization framework devised in the paper. Comprehensive experiments on diverse three benchmark datasets have shown the effectiveness and rationality of ACQH.

preprint2020arXiv

Coronary Artery Segmentation in Angiographic Videos Using A 3D-2D CE-Net

Coronary angiography is an indispensable assistive technique for cardiac interventional surgery. Segmentation and extraction of blood vessels from coronary angiography videos are very essential prerequisites for physicians to locate, assess and diagnose the plaques and stenosis in blood vessels. This article proposes a new video segmentation framework that can extract the clearest and most comprehensive coronary angiography images from a video sequence, thereby helping physicians to better observe the condition of blood vessels. This framework combines a 3D convolutional layer to extract spatial--temporal information from a video sequence and a 2D CE--Net to accomplish the segmentation task of an image sequence. The input is a few continuous frames of angiographic video, and the output is a mask of segmentation result. From the results of segmentation and extraction, we can get good segmentation results despite the poor quality of coronary angiography video sequences.

preprint2020arXiv

Feasibility and physics potential of detecting $^8$B solar neutrinos at JUNO

The Jiangmen Underground Neutrino Observatory~(JUNO) features a 20~kt multi-purpose underground liquid scintillator sphere as its main detector. Some of JUNO's features make it an excellent experiment for $^8$B solar neutrino measurements, such as its low-energy threshold, its high energy resolution compared to water Cherenkov detectors, and its much large target mass compared to previous liquid scintillator detectors. In this paper we present a comprehensive assessment of JUNO's potential for detecting $^8$B solar neutrinos via the neutrino-electron elastic scattering process. A reduced 2~MeV threshold on the recoil electron energy is found to be achievable assuming the intrinsic radioactive background $^{238}$U and $^{232}$Th in the liquid scintillator can be controlled to 10$^{-17}$~g/g. With ten years of data taking, about 60,000 signal and 30,000 background events are expected. This large sample will enable an examination of the distortion of the recoil electron spectrum that is dominated by the neutrino flavor transformation in the dense solar matter, which will shed new light on the tension between the measured electron spectra and the predictions of the standard three-flavor neutrino oscillation framework. If $Δm^{2}_{21}=4.8\times10^{-5}~(7.5\times10^{-5})$~eV$^{2}$, JUNO can provide evidence of neutrino oscillation in the Earth at the about 3$σ$~(2$σ$) level by measuring the non-zero signal rate variation with respect to the solar zenith angle. Moveover, JUNO can simultaneously measure $Δm^2_{21}$ using $^8$B solar neutrinos to a precision of 20\% or better depending on the central value and to sub-percent precision using reactor antineutrinos. A comparison of these two measurements from the same detector will help elucidate the current tension between the value of $Δm^2_{21}$ reported by solar neutrino experiments and the KamLAND experiment.

preprint2020arXiv

Intrinsic current drive by electromagnetic electron drift wave turbulence in tokamak pedestal region

The local intrinsic parallel current density driven by electron drift wave (DW) turbulence including electromagnetic (EM) effects is analytically studied. The scalings of the ratios of intrinsic current density driven by residual turbulent flux and by turbulent source to the bootstrap current density with electron density and temperature are predicted to be $T_e^{3/4}T_i/n_e$ and $T_eT_i/n_e$, respectively. Based on the typical parameters in DIII-D pedestal region, the local intrinsic current density driven by both the residual turbulent flux and the turbulent source is negligible. However, despite the negligible turbulent source driven current, the residual turbulent flux driven local intrinsic current density by EM DW turbulence can reach about 66% of the bootstrap current density for ITER pedestal parameters due to much lower collisionality in ITER than in DIII-D. Moreover, the contributions from adiabatic ES parts, non-adiabatic ES parts and non-adiabatic EM parts of the plasma response to electromagnetic fluctuations are analyzed. It is found that there exists strong cancelation between non-adiabatic ES response and the non-adiabatic EM response for the ITER pedestal case, and thus the kinetic stress contributed by the adiabatic ES response of parallel electron pressure dominates the intrinsic current drive. This is different from the ES electron DW case. Therefore, the EM effects on turbulence driven intrinsic current density should be carefully considered in the future reactor with high ratio of electron pressure to the magnetic pressure and steep pressure profile.

preprint2020arXiv

Intrinsic current drive by electromagnetic electron temperature gradient turbulence in tokamak plasmas

The mean parallel current density evolution equation is presented using electromagnetic (EM) gyrokinetic equation. There exist two types of intrinsic current driving mechanisms resulted from EM electron temperature gradient (ETG) turbulence. The first type is the divergence of residual turbulent flux including a residual stress-like term and a kinetic stress-like term. The second type is named as residual turbulent source, which is driven by the correlation between density and parallel electric field fluctuations. The intrinsic current density driven by the residual turbulent source is negligible as compared to that driven by the residual turbulent flux. The ratio of intrinsic current density driven by EM ETG turbulence to the background bootstrap current density is estimated. The local intrinsic current density driven by the residual turbulent flux for mesoscale variation of turbulent flux can reach about 80% of the bootstrap current density in the core region of ITER standard scenario, but there is no net intrinsic current on a global scale. Based on this, the local intrinsic current driven by EM micro-turbulence and its effects on local modification of the profile of safety factor may be needed to be carefully taken into account in the future device with high beta_e which is the ratio between electron pressure to the magnetic pressure.

preprint2020arXiv

Knowledge Graph-Augmented Abstractive Summarization with Semantic-Driven Cloze Reward

Sequence-to-sequence models for abstractive summarization have been studied extensively, yet the generated summaries commonly suffer from fabricated content, and are often found to be near-extractive. We argue that, to address these issues, the summarizer should acquire semantic interpretation over input, e.g., via structured representation, to allow the generation of more informative summaries. In this paper, we present ASGARD, a novel framework for Abstractive Summarization with Graph-Augmentation and semantic-driven RewarD. We propose the use of dual encoders---a sequential document encoder and a graph-structured encoder---to maintain the global context and local characteristics of entities, complementing each other. We further design a reward based on a multiple choice cloze test to drive the model to better capture entity interactions. Results show that our models produce significantly higher ROUGE scores than a variant without knowledge graph as input on both New York Times and CNN/Daily Mail datasets. We also obtain better or comparable performance compared to systems that are fine-tuned from large pretrained language models. Human judges further rate our model outputs as more informative and containing fewer unfaithful errors.

preprint2020arXiv

Quantum kinetic energy and isotope fractionation in aqueous ionic solutions

At room temperature, the quantum contribution to the kinetic energy of a water molecule exceeds the classical contribution by an order of magnitude. The quantum kinetic energy (QKE) of a water molecule is modulated by its local chemical environment and leads to uneven partitioning of isotopes between different phases in thermal equilibrium, which would not occur if the nuclei behaved classically. In this work, we use ab initio path integral simulations to show that QKEs of the water molecules and the equilibrium isotope fractionation ratios of the oxygen and hydrogen isotopes are sensitive probes of the hydrogen bonding structures in aqueous ionic solutions. In particular, we demonstrate how the QKE of water molecules in path integral simulations can be decomposed into translational, rotational and vibrational degrees of freedom, and use them to determine the impact of solvation on different molecular motions. By analyzing the QKEs and isotope fractionation ratios, we show how the addition of the Na$^+$, Cl$^-$ and HPO$_4^{2-}$ ions perturbs the competition between quantum effects in liquid water and impacts their local solvation structures.

preprint2020arXiv

Reducing the X-ray radiation exposure frequency in cardio-angiography via deep-learning based video interpolation

Cardiac coronary angiography is a major technology to assist doctors during cardiac interventional surgeries. Under the exposure of X-ray radiation, doctors inject contrast agents through catheters to determine the position and status of coronary vessels in real time. To get a coronary angiography video with a high frame rate, the doctor needs to increase the exposure frequency and intensity of the X-ray. This will inevitably increase the X-ray harm to both patients and surgeons. In this work, we innovatively utilize a deep-learning based video interpolation algorithm to interpolate coronary angiography videos. Moreover, we establish a new coronary angiography image dataset ,which contains 95,039 triplets images to retrain the video interpolation network model. Using the retrained network we synthesize high frame rate coronary angiography video from the low frame rate coronary angiography video. The average peak signal to noise ratio(PSNR) of those synthesized video frames reaches 34dB. Extensive experiment results demonstrate the feasibility of using the video frame interpolation algorithm to synthesize continuous and clear high frame rate coronary angiography video. With the help of this technology, doctors can significantly reduce exposure frequency and intensity of the X-ray during coronary angiography.

preprint2020arXiv

Relative expander entropy in the presence of a two-sided obstacle and applications

We study a notion of relative entropy motivated by self-expanders of mean curvature flow. In particular, we obtain the existence of this quantity for arbitrary hypersurfaces trapped between two disjoint self-expanders asymptotic to the same cone. This allows us to begin to develop the variational theory for the relative entropy functional for the associated obstacle problem. We also obtain a version of the forward monotonicity formula for mean curvature flow proposed by Ilmanen.

preprint2020arXiv

Robust Medical Instrument Segmentation Challenge 2019

Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions. While numerous methods for detecting, segmenting and tracking of medical instruments based on endoscopic video images have been proposed in the literature, key limitations remain to be addressed: Firstly, robustness, that is, the reliable performance of state-of-the-art methods when run on challenging images (e.g. in the presence of blood, smoke or motion artifacts). Secondly, generalization; algorithms trained for a specific intervention in a specific hospital should generalize to other interventions or institutions. In an effort to promote solutions for these limitations, we organized the Robust Medical Instrument Segmentation (ROBUST-MIS) challenge as an international benchmarking competition with a specific focus on the robustness and generalization capabilities of algorithms. For the first time in the field of endoscopic image processing, our challenge included a task on binary segmentation and also addressed multi-instance detection and segmentation. The challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures from three different types of surgery. The validation of the competing methods for the three tasks (binary segmentation, multi-instance detection and multi-instance segmentation) was performed in three different stages with an increasing domain gap between the training and the test data. The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap. While the average detection and segmentation quality of the best-performing algorithms is high, future research should concentrate on detection and segmentation of small, crossing, moving and transparent instrument(s) (parts).

preprint2020arXiv

Tackling Ordinal Regression Problem for Heterogeneous Data: Sparse and Deep Multi-Task Learning Approaches

Many real-world datasets are labeled with natural orders, i.e., ordinal labels. Ordinal regression is a method to predict ordinal labels that finds a wide range of applications in data-rich domains, such as natural, health and social sciences. Most existing ordinal regression approaches work well for independent and identically distributed (IID) instances via formulating a single ordinal regression task. However, for heterogeneous non-IID instances with well-defined local geometric structures, e.g., subpopulation groups, multi-task learning (MTL) provides a promising framework to encode task (subgroup) relatedness, bridge data from all tasks, and simultaneously learn multiple related tasks in efforts to improve generalization performance. Even though MTL methods have been extensively studied, there is barely existing work investigating MTL for heterogeneous data with ordinal labels. We tackle this important problem via sparse and deep multi-task approaches. Specifically, we develop a regularized multi-task ordinal regression (MTOR) model for smaller datasets and a deep neural networks based MTOR model for large-scale datasets. We evaluate the performance using three real-world healthcare datasets with applications to multi-stage disease progression diagnosis. Our experiments indicate that the proposed MTOR models markedly improve the prediction performance comparing with single-task ordinal regression models.

preprint2020arXiv

TAO Conceptual Design Report: A Precision Measurement of the Reactor Antineutrino Spectrum with Sub-percent Energy Resolution

The Taishan Antineutrino Observatory (TAO, also known as JUNO-TAO) is a satellite experiment of the Jiangmen Underground Neutrino Observatory (JUNO). A ton-level liquid scintillator detector will be placed at about 30 m from a core of the Taishan Nuclear Power Plant. The reactor antineutrino spectrum will be measured with sub-percent energy resolution, to provide a reference spectrum for future reactor neutrino experiments, and to provide a benchmark measurement to test nuclear databases. A spherical acrylic vessel containing 2.8 ton gadolinium-doped liquid scintillator will be viewed by 10 m^2 Silicon Photomultipliers (SiPMs) of >50% photon detection efficiency with almost full coverage. The photoelectron yield is about 4500 per MeV, an order higher than any existing large-scale liquid scintillator detectors. The detector operates at -50 degree C to lower the dark noise of SiPMs to an acceptable level. The detector will measure about 2000 reactor antineutrinos per day, and is designed to be well shielded from cosmogenic backgrounds and ambient radioactivities to have about 10% background-to-signal ratio. The experiment is expected to start operation in 2022.

preprint2020arXiv

Tilted-pulse-front schemes for terahertz generation

High energy single- to few-cycle terahertz pulses enable the exploration of the frontier of science, such as electron acceleration, strong-field physics, and spectroscopy. One important method of generating such terahertz pulses is to use the tilted-pulse-front (TPF) technique. However, due to the non-collinear phase-matching, the large angular dispersion leads to a spatial and temporal break-up of the optical pump, limiting the terahertz generation efficiency and reducing the few-cycle character of the generated terahertz fields. To reduce the effects caused by angular dispersion, multiple schemes with discrete pulse-front-tilt have been suggested. We propose a terahertz generation scheme, where a spatio-temporally chirped (STC) pump pulse is utilized. With our 2D+1 numerical model, we perform a systematic comparative study of the conventional TPF scheme, three discrete TPF schemes, and the STC scheme. This model predicts smaller optimal interaction length and significantly smaller conversion efficiency compared to simple 1D models. We conclude that the STC scheme delivers spatially homogeneous few-cycle terahertz pulses with the highest conversion efficiency. Additionally, given a short interaction length, the discrete TPF schemes cannot outperform the continuous ones. In general, this work gives guidance to choose the most appropriate setup for a given terahertz experiment

preprint2020arXiv

Vision-Based Fall Event Detection in Complex Background Using Attention Guided Bi-directional LSTM

Fall event detection, as one of the greatest risks to the elderly, has been a hot research issue in the solitary scene in recent years. Nevertheless, there are few researches on the fall event detection in complex background. Different from most conventional background subtraction methods which depend on background modeling, Mask R-CNN method based on deep learning technique can clearly extract the moving object in noise background. We further propose an attention guided Bi-directional LSTM model for the final fall event detection. To demonstrate the efficiency, the proposed method is verified in the public dataset and self-build dataset. Evaluation of the algorithm performances in comparison with other state-of-the-art methods indicates that the proposed design is accurate and robust, which means it is suitable for the task of fall event detection in complex situation.

preprint2020arXiv

XREF: Entity Linking for Chinese News Comments with Supplementary Article Reference

Automatic identification of mentioned entities in social media posts facilitates quick digestion of trending topics and popular opinions. Nonetheless, this remains a challenging task due to limited context and diverse name variations. In this paper, we study the problem of entity linking for Chinese news comments given mentions' spans. We hypothesize that comments often refer to entities in the corresponding news article, as well as topics involving the entities. We therefore propose a novel model, XREF, that leverages attention mechanisms to (1) pinpoint relevant context within comments, and (2) detect supporting entities from the news article. To improve training, we make two contributions: (a) we propose a supervised attention loss in addition to the standard cross entropy, and (b) we develop a weakly supervised training scheme to utilize the large-scale unlabeled corpus. Two new datasets in entertainment and product domains are collected and annotated for experiments. Our proposed method outperforms previous methods on both datasets.

preprint2019arXiv

Cluster-wise Unsupervised Hashing for Cross-Modal Similarity Search

Large-scale cross-modal hashing similarity retrieval has attracted more and more attention in modern search applications such as search engines and autopilot, showing great superiority in computation and storage. However, current unsupervised cross-modal hashing methods still have some limitations: (1)many methods relax the discrete constraints to solve the optimization objective which may significantly degrade the retrieval performance;(2)most existing hashing model project heterogenous data into a common latent space, which may always lose sight of diversity in heterogenous data;(3)transforming real-valued data point to binary codes always results in abundant loss of information, producing the suboptimal continuous latent space. To overcome above problems, in this paper, a novel Cluster-wise Unsupervised Hashing (CUH) method is proposed. Specifically, CUH jointly performs the multi-view clustering that projects the original data points from different modalities into its own low-dimensional latent semantic space and finds the cluster centroid points and the common clustering indicators in its own low-dimensional space, and learns the compact hash codes and the corresponding linear hash functions. An discrete optimization framework is developed to learn the unified binary codes across modalities under the guidance cluster-wise code-prototypes. The reasonableness and effectiveness of CUH is well demonstrated by comprehensive experiments on diverse benchmark datasets.

preprint2019arXiv

Full 3D+1 modelling of the tilted-pulse-front setups for single-cycle terahertz generation

The tilted-pulse-front setup utilizing a diffraction grating is one of the most successful methods to generate single- to few-cycle terahertz pulses. However, the generated terahertz pulses have a large spatial inhomogeneity, due to the noncollinear phase matching condition and the asymmetry of the prism-shaped nonlinear crystal geometry, especially when pushing for high optical-to-terahertz conversion efficiency. A 3D+1 (x,y,z,t) numerical model is necessary in order to fully investigate the terahertz generation problem in the tilted-pulse-front scheme. We compare in detail the differences between 1D+1, 2D+1 and 3D+1 models. The simulations show that the size of the optical beam in the pulse-front-tilt plane sensitively affects the spatio-temporal properties of the terahertz electric field. The terahertz electric field is found to have a strong spatial dependence such that a few-cycle pulse is only generated near the apex of the prism. The part of the beam farther from the apex contains a large fraction of the energy but has a waveform that deviates from a few-cycle. This strong spatial dependence must be accounted for when using the terahertz pulses for strong-field physics and carrier-envelope-phase sensitive experiments such as terahertz acceleration, coherent control of antiferromagnetic spin waves and terahertz high-harmonic generation.

preprint2016arXiv

A Piece of My Mind: A Sentiment Analysis Approach for Online Dispute Detection

We investigate the novel task of online dispute detection and propose a sentiment analysis solution to the problem: we aim to identify the sequence of sentence-level sentiments expressed during a discussion and to use them as features in a classifier that predicts the DISPUTE/NON-DISPUTE label for the discussion as a whole. We evaluate dispute detection approaches on a newly created corpus of Wikipedia Talk page disputes and find that classifiers that rely on our sentiment tagging features outperform those that do not. The best model achieves a very promising F1 score of 0.78 and an accuracy of 0.80.

preprint2016arXiv

A Sentence Compression Based Framework to Query-Focused Multi-Document Summarization

We consider the problem of using sentence compression techniques to facilitate query-focused multi-document summarization. We present a sentence-compression-based framework for the task, and design a series of learning-based compression models built on parse trees. An innovative beam search decoder is proposed to efficiently find highly probable compressions. Under this framework, we show how to integrate various indicative metrics such as linguistic motivation and query relevance into the compression process by deriving a novel formulation of a compression scoring function. Our best model achieves statistically significant improvement over the state-of-the-art systems on several metrics (e.g. 8.0% and 5.4% improvements in ROUGE-2 respectively) for the DUC 2006 and 2007 summarization task.

preprint2016arXiv

A Sharp Lower Bound for the Entropy of Closed Hypersurfaces up to Dimension Six

In [5], Colding-Ilmanen-Minicozzi-White showed that within the class of closed smooth self-shrinkers in $\mathbb{R}^{n+1}$, the entropy is uniquely minimized at the round sphere. They conjectured that, for $2\leq n\leq 6$, the round sphere minimizes the entropy among all closed smooth hypersurfaces. Using an appropriate weak mean curvature flow, we prove their conjecture. For these dimensions, our approach also gives a new proof of the main result of [5] and extends its conclusions to compact singular self-shrinkers.

preprint2016arXiv

Focused Meeting Summarization via Unsupervised Relation Extraction

We present a novel unsupervised framework for focused meeting summarization that views the problem as an instance of relation extraction. We adapt an existing in-domain relation learner (Chen et al., 2011) by exploiting a set of task-specific constraints and features. We evaluate the approach on a decision summarization task and show that it outperforms unsupervised utterance-level extractive summarization baselines as well as an existing generic relation-extraction-based summarization method. Moreover, our approach produces summaries competitive with those generated by supervised methods in terms of the standard ROUGE score.

preprint2016arXiv

Generalized Quantum Master Equations In and Out of Equilibrium: When Can One Win?

Generalized quantum master equations (GQMEs) are an important tool in modeling chemical and physical processes. For a large number of problems it has been shown that exact and approximate quantum dynamics methods can be made dramatically more efficient, and in the latter case more accurate, by proceeding via the GQME formalism. However, there are many situations where utilizing the GQME approach seems to offer no advantage over a direct evaluation of the property of interest. Here we provide a more detailed understanding of the conditions under which these methods will offer benefits. In particular, we derive exact expressions for the memory kernel for systems both in and out of equilibrium, and show the conditions under which these expressions will be guaranteed to return a result identical to that obtained from direct simulation. We also show the conditions which approximate methods must satisfy if they are to offer different results when used in conjunction with the GQME formalism. These exact analytical results thus provide new insights as to when proceeding via the GQME approach can improve the accuracy or efficiency of simulations.

preprint2016arXiv

Improving Agreement and Disagreement Identification in Online Discussions with A Socially-Tuned Sentiment Lexicon

We study the problem of agreement and disagreement detection in online discussions. An isotonic Conditional Random Fields (isotonic CRF) based sequential model is proposed to make predictions on sentence- or segment-level. We automatically construct a socially-tuned lexicon that is bootstrapped from existing general-purpose sentiment lexicons to further improve the performance. We evaluate our agreement and disagreement tagging model on two disparate online discussion corpora -- Wikipedia Talk pages and online debates. Our model is shown to outperform the state-of-the-art approaches in both datasets. For example, the isotonic CRF model achieves F1 scores of 0.74 and 0.67 for agreement and disagreement detection, when a linear chain CRF obtains 0.58 and 0.56 for the discussions on Wikipedia Talk pages.

preprint2016arXiv

Intrinsic parallel rotation drive by electromagnetic ion temperature gradient turbulence

The quasilinear intrinsic parallel flow drive including parallel residual stress, kinetic stress, cross Maxwell stress and parallel turbulent acceleration by electromagnetic ion temperature gradient (ITG) turbulence is calculated analytically using electromagnetic gyrokinetic theory. Both the kinetic stress and cross Maxwell stress also enter the mean parallel flow velocity equation via their divergence, as for the usual residual stress. The turbulent acceleration driven by ion pressure gradient along the total magnetic field (including equilibrium magnetic field and fluctuating radial magnetic field) cannot be written as a divergence of stress, and so should be treated as a local source/sink. All these terms can provide intrinsic parallel rotation drive. Electromagnetic effects reduce the non-resonant electrostatic stress force and even reverse it, but enhance the resonant stress force. Both the non-resonant and resonant turbulent acceleration terms are also enhanced by electromagnetic effects. The possible implications of our results for experimental observations are discussed.

preprint2016arXiv

Intrinsic rotation drive by collisionless trapped electron mode turbulence

Both the parallel residual stress and parallel turbulent acceleration driven by electrostatic collisionsless trapped electron mode (CTEM) turbulence are calculated analytically using gyrokinetic theory. Quasilinear results show that the parallel residual stress contributes an outward flux of co-current rotation for normal magnetic shear and turbulence intensity profile increasing outward. This may induce intrinsic counter-current rotation or flattening of the co-current rotation profile. The parallel turbulent acceleration driven by CTEM turbulence vanishes, due to the absence of a phase shift between density fluctuation and ion pressure fluctuation. This is different from the case of ion temperature gradient (ITG) turbulence, for which the turbulent acceleration can provide co-current drive for normal magnetic shear and turbulence intensity profile increasing outward. Its order of magnitude is predicted to be the same as that of the divergence of the residual stress [Lu Wang and P.H. Diamond, Phys. Rev. Lett. {\bf 110}, 265006 (2013)]. A possible connection of these theoretical results to experimental observations of electron cyclotron heating effects on toroidal rotation is discussed.

preprint2016arXiv

Isotopic dependence of impurity transport driven by ion temperature gradient turbulence

Hydrogenic ion mass effects, namely the isotopic effects on impurity transport driven by ion temperature gradient (ITG) turbulence are investigated using gyrokinetic theory. For non-trace impurities, changing from hydrogen (H) to deuterium (D), and to tritium (T) plasmas, the outward flux for lower (higher) ionized impurities or for lighter (heavier) impurities is found to decrease (increase), although isotopic dependence of ITG linear growth rate is weak. This is mainly due to the decrease of outward (inward) convection, while the isotopic dependence of diffusion is relatively weak. In addition, the isotopic effects reduce (enhance) the impurity flux of fully ionized carbon (C6+) for weaker (stronger) magnetic shear. In trace impurity limit, the isotopic effects are found to reduce the accumulation of high-Z tungsten (W). Moreover, the isotopic effects on the peaking factor (PF) of trace high-Z W get stronger with stronger magnetic shear.

preprint2016arXiv

Leveraging Semantic Web Search and Browse Sessions for Multi-Turn Spoken Dialog Systems

Training statistical dialog models in spoken dialog systems (SDS) requires large amounts of annotated data. The lack of scalable methods for data mining and annotation poses a significant hurdle for state-of-the-art statistical dialog managers. This paper presents an approach that directly leverage billions of web search and browse sessions to overcome this hurdle. The key insight is that task completion through web search and browse sessions is (a) predictable and (b) generalizes to spoken dialog task completion. The new method automatically mines behavioral search and browse patterns from web logs and translates them into spoken dialog models. We experiment with naturally occurring spoken dialogs and large scale web logs. Our session-based models outperform the state-of-the-art method for entity extraction task in SDS. We also achieve better performance for both entity and relation extraction on web search queries when compared with nontrivial baselines.

preprint2016arXiv

Neural Network-Based Abstract Generation for Opinions and Arguments

We study the problem of generating abstractive summaries for opinionated text. We propose an attention-based neural network model that is able to absorb information from multiple text units to construct informative, concise, and fluent summaries. An importance-based sampling method is designed to allow the encoder to integrate information from an important subset of input. Automatic evaluation indicates that our system outperforms state-of-the-art abstractive and extractive summarization systems on two newly collected datasets of movie reviews and arguments. Our system summaries are also rated as more informative and grammatical in human evaluation.

preprint2016arXiv

Poloidal rotation driven by nonlinear momentum transport in strong electrostatic turbulence

Virtually, all existing theoretical works on turbulent poloidal momentum transport are based on quasilinear theory. Nonlinear poloidal momentum flux - $\langle \tilde{v}_r \tilde{n} \tilde{v}_θ \rangle$ is universally neglected. However, in the strong turbulence regime where relative fluctuation amplitude is no longer small, quasilinear theory is invalid. This is true at the all-important plasma edge. In this work, nonlinear poloidal momentum flux $ \langle \tilde{v}_r \tilde{n} \tilde{v}_θ \rangle $ in strong electrostatic turbulence is calculated using Hasegawa-Mima equation, and is compared with quasilinear poloidal Reynolds stress. A novel property is that symmetry breaking in fluctuation spectrum is not necessary for a nonlinear poloidal momentum flux. This is fundamentally different from the quasilinear Reynold stress. Furthermore, the comparison implies that the poloidal rotation drive from the radial gradient of nonlinear momentum flux is comparable to that from the quasilinear Reynolds force. Nonlinear poloidal momentum transport in strong electrostatic turbulence is thus not negligible for poloidal rotation drive, and so may be significant to transport barrier formation.

preprint2016arXiv

Query-Focused Opinion Summarization for User-Generated Content

We present a submodular function-based framework for query-focused opinion summarization. Within our framework, relevance ordering produced by a statistical ranker, and information coverage with respect to topic distribution and diverse viewpoints are both encoded as submodular functions. Dispersion functions are utilized to minimize the redundancy. We are the first to evaluate different metrics of text similarity for submodularity-based summarization methods. By experimenting on community QA and blog summarization, we show that our system outperforms state-of-the-art approaches in both automatic evaluation and human evaluation. A human evaluation task is conducted on Amazon Mechanical Turk with scale, and shows that our systems are able to generate summaries of high overall quality and information diversity.

preprint2016arXiv

Socially-Informed Timeline Generation for Complex Events

Existing timeline generation systems for complex events consider only information from traditional media, ignoring the rich social context provided by user-generated content that reveals representative public interests or insightful opinions. We instead aim to generate socially-informed timelines that contain both news article summaries and selected user comments. We present an optimization framework designed to balance topical cohesion between the article and comment summaries along with their informativeness and coverage of the event. Automatic evaluations on real-world datasets that cover four complex events show that our system produces more informative timelines than state-of-the-art systems. In human evaluation, the associated comment summaries are furthermore rated more insightful than editor's picks and comments ranked highly by users.

preprint2016arXiv

Status Report of the DPHEP Collaboration: A Global Effort for Sustainable Data Preservation in High Energy Physics

Data from High Energy Physics (HEP) experiments are collected with significant financial and human effort and are mostly unique. An inter-experimental study group on HEP data preservation and long-term analysis was convened as a panel of the International Committee for Future Accelerators (ICFA). The group was formed by large collider-based experiments and investigated the technical and organizational aspects of HEP data preservation. An intermediate report was released in November 2009 addressing the general issues of data preservation in HEP and an extended blueprint paper was published in 2012. In July 2014 the DPHEP collaboration was formed as a result of the signature of the Collaboration Agreement by seven large funding agencies (others have since joined or are in the process of acquisition) and in June 2015 the first DPHEP Collaboration Workshop and Collaboration Board meeting took place. This status report of the DPHEP collaboration details the progress during the period from 2013 to 2015 inclusive.

preprint2016arXiv

Summarizing Decisions in Spoken Meetings

This paper addresses the problem of summarizing decisions in spoken meetings: our goal is to produce a concise {\it decision abstract} for each meeting decision. We explore and compare token-level and dialogue act-level automatic summarization methods using both unsupervised and supervised learning frameworks. In the supervised summarization setting, and given true clusterings of decision-related utterances, we find that token-level summaries that employ discourse context can approach an upper bound for decision abstracts derived directly from dialogue acts. In the unsupervised summarization setting,we find that summaries based on unsupervised partitioning of decision-related utterances perform comparably to those based on partitions generated using supervised techniques (0.22 ROUGE-F1 using LDA-based topic models vs. 0.23 using SVMs).

preprint2016arXiv

Unsupervised Topic Modeling Approaches to Decision Summarization in Spoken Meetings

We present a token-level decision summarization framework that utilizes the latent topic structures of utterances to identify "summary-worthy" words. Concretely, a series of unsupervised topic models is explored and experimental results show that fine-grained topic models, which discover topics at the utterance-level rather than the document-level, can better identify the gist of the decision-making process. Moreover, our proposed token-level summarization approach, which is able to remove redundancies within utterances, outperforms existing utterance ranking based summarization methods. Finally, context information is also investigated to add additional relevant information to the summary.

preprint2015arXiv

Modeling and Simulation for Fluid-Rotating Structure Interaction

In this paper, we study a dynamic fluid-structure interaction (FSI) model for an elastic structure that is immersed and spinning in the fluid. We develop a linear constitutive model to describe the motion of a rotational elastic structure which is suitable for the application of arbitrary Lagrangian-Eulerian (ALE) method in FSI simulation. Additionally, a novel ALE mapping method is designed to generate the moving fluid mesh while the deformable structure spins in a non-axisymmetric fluid channel. The structure velocity is adopted as the principle unknown to form a monolithic saddle-point system together with fluid velocity and pressure. We discretize the nonlinear saddle-point system with mixed finite element method and Newton's linearization, and prove that the derived saddle-point problem is well-posed. The developed methodology is applied to a self-defined elastic structure and a realistic hydro-turbine under a prescribed angular velocity. Both illustrate the satisfactory numerical results of an elastic structure that is deforming and rotating while interacting with the fluid. The numerical validation is also conducted to demonstrate the modeling consistency.

preprint2015arXiv

Nonlinear parallel momentum transport in strong turbulence

Most existing theoretical studies of momentum transport focus on calculating the Reynolds stress based on quasilinear theory, without considering the \emph{nonlinear} momentum flux-$<\tilde{v}_r \tilde{n} \tilde{u}_{\|} >$. However, a recent experiment on TORPEX found that the nonlinear toroidal momentum flux induced by blobs makes a significant contribution as compared to the Reynolds stress [Labit et al., Phys. Plasmas {\bf 18}, 032308 (2011)]. In this work, the nonlinear parallel momentum flux in strong turbulence is calculated by using three dimensional Hasegawa-Mima equation. It is shown that nonlinear diffusivity is smaller than quasilinear diffusivity from Reynolds stress. However, the leading order nonlinear residual stress can be comparable to the quasilinear residual stress, and so could be important to intrinsic rotation in tokamak edge plasmas. A key difference from the quasilinear residual stress is that parallel fluctuation spectrum asymmetry is not required for nonlinear residual stress.

preprint2015arXiv

Quantum delocalization of protons in the hydrogen bond network of an enzyme active site

Enzymes utilize protein architectures to create highly specialized structural motifs that can greatly enhance the rates of complex chemical transformations. Here we use experiments, combined with ab initio simulations that exactly include nuclear quantum effects, to show that a triad of strongly hydrogen bonded tyrosine residues within the active site of the enzyme ketosteroid isomerase (KSI) facilitates quantum proton delocalization. This delocalization dramatically stabilizes the deprotonation of an active site tyrosine residue, resulting in a very large isotope effect on its acidity. When an intermediate analog is docked, it is incorporated into the hydrogen bond network, giving rise to extended quantum proton delocalization in the active site. These results shed light on the role of nuclear quantum effects in the hydrogen bond network that stabilizes the reactive intermediate of KSI, and the behavior of protons in biological systems containing strong hydrogen bonds.

preprint2015arXiv

Variational dynamics of the sub-Ohmic spin-boson model on the basis of multiple Davydov $\mathrm{D}_1$ states

Dynamics of the sub-Ohmic spin-boson model is investigated by employing a multitude of the Davydov D$_1$ trial states, also known as the multi-D$_1$ Ansatz. Accuracy in dynamics simulations is improved significantly over the single D$_1$ Ansatz, especially in the weak system-bath coupling regime. The reliability of the multi-D$_1$ Ansatz for various coupling strengths and initial conditions are also systematically examined, with results compared closely with those of the hierarchy equations of motion and the path integral Monte Carlo approaches. In addition, a coherent-incoherent phase crossover in the nonequilibrium dynamics is studied through the multi-D$_1$ Ansatz. The phase diagram is obtained with a critical point $s_{c}=0.4$. For $s_{c}<s<1$, the coherent-to-incoherent crossover occurs at a certain coupling strength, while the coherent state recurs at a much larger coupling strength. For $s<s_{c}$, only the coherent phase exists.

preprint2014arXiv

A Nearly Optimal Multigrid Method for General Unstructured Grids

In this paper, we develop a multigrid method on unstructured shape-regular grids. For a general shape-regular unstructured grid of ${\cal O}(N)$ elements, we present a construction of an auxiliary coarse grid hierarchy on which a geometric multigrid method can be applied together with a smoothing on the original grid by using the auxiliary space preconditioning technique. Such a construction is realized by a cluster tree which can be obtained in ${\cal O}(N\log N)$ operations for a grid of $N$ elements. This tree structure in turn is used for the definition of the grid hierarchy from coarse to fine. For the constructed grid hierarchy we prove that the convergence rate of the multigrid preconditioned CG for an elliptic PDE is $1 - {\cal O}({1}/{\log N})$. Numerical experiments confirm the theoretical bounds and show that the total complexity is in ${\cal O}(N\log N)$.

preprint2014arXiv

A Remark on a Uniqueness Property of High Multiplicity Tangent Flows in Dimension Three

In this note, we combine the work of Ilmanen and of Colding-Ilmanen-Minicozzi to observe a uniqueness property for tangent flows at the first singular time of a smooth mean curvature flow of a closed surface in 3-dimensional Euclidean space. Specifically, if, at a fixed singular point, one tangent flow is a positive integer multiple of a shrinking plane, cylinder or sphere, then, modulo rotations, all tangent flows at the point are the same.

preprint2014arXiv

Graphdiyne-metal contacts and graphdiyne transistors

Graphdiyne is prepared on metal surface, and making devices out of it also inevitably involves contact with metals. Using density functional theory with dispersion correction, we systematically studied for the first time the interfacial properties of graphdiyne contacting with a series of metals (Al, Ag, Cu, Au, Ir, Pt, Ni, and Pd). Graphdiyne is in an n-type Ohmic or quasi-Ohmic contact with Al, Ag, and Cu, while it is in a Schottky contact with Au (at source/drain interface), Pd, Pt, Ni, and Ir (at source/drain-channel interface), with high Schottky barrier heights of 0.39, 0.21 (n-type), 0.30, 0.41, and 0.45 (p-type) eV, respectively. A graphdiyne field effect transistor (FET) with Al electrodes is simulated by using quantum transport calculations. This device exhibits an on-off ratio up to 104 and a very large on-state current of 1.3 * 104 mA/mm in a 10 nm channel length. Thus, a new prospect is opened up for graphdiyne in high performance nanoscale devices.

preprint2014arXiv

Quantum fluctuations and isotope effects in ab initio descriptions of water

Nuclear quantum effects, such as zero-point energy and tunneling, cause significant changes to the structure and dynamics of hydrogen bonded systems such as liquid water. However, due to the current inability to simulate liquid water using an exact description of its electronic structure, the interplay between nuclear and electronic quantum effects remains unclear. Here we use simulations that incorporate the quantum mechanical nature of both the nuclei and electrons to provide a fully ab initio determination of the particle quantum kinetic energies, free energy change upon exchanging hydrogen for deuterium and the isotope fractionation ratio in water. These properties, which selectively probe the quantum nature of the nuclear degrees of freedom, allow us to make direct comparison to recent experiments and elucidate how electronic exchange and correlation and nuclear quantum fluctuations determine the structure of the hydrogen bond in water.

preprint2014arXiv

Tuning Electronic and Magnetic Properties of Early Transition Metal Dichalcogenides via Tensile Strain

We have performed a systematic first-principles study of the effect of tensile strains on the electronic properties of early transition-metal dichalcogenide (TMDC) monolayers MX2 (M = Sc, Ti, Zr, Hf, Ta, Cr; X = S, Se, and Te). Our density-functional theory (DFT) calculations suggest that the tensile strain can significantly affect the electronic properties of many early TMDCs in general and the electronic bandgap in particular. For group IVB TMDCs (TiX2, ZrX2, HfX2), the bandgap increases with the tensile strain, but for ZrX2 and HfX2 (X=S, Se), the bandgap starts to decrease at strain 6% to 8%. For the group-VB TMDCs (TaX2), the tensile strain can either induce the ferromagnetism or enhance the existing ferromagnetism. For the group-VIB TMDCs (CrX2) the direct-to-indirect bandgap transition is seen upon application of the tensile strain, except CrTe2 whose bandgap decreases with the tensile strain even though the direct character of its bandgap is retained. Lastly, for the group-IIIB TMDCs (ScX2) in the T metallic phase, we find that the tensile strain has little effect on their electronic and magnetic properties. Our study suggests that strain engineering is an effective approach to modify electronic and magnetic properties of most early TMDC monolayers, thereby opening an alternative way for future optoelectronic and spintronic applications.

preprint2013arXiv

Evaluation of imaging protocol for ECT based on CS image reconstruction algorithm

SPECT (Single-photon Emission Computerized Tomography) and PET (Positron Emission Tomography) are essential medical imaging tools, for which the sampling angle number, scan time should be chosen carefully to compromise between image quality and the radiopharmaceutical dose. In this study, the image quality of different acquisition protocol was evaluated via varied angle number and count number per angle with Monte Carlo simulation data. It was shown that when similar imaging counts were used, the factor of acquisition counts was more important than that of the sampling number in ECT (Emission Computerized Tomography). To further reduce the activity requirement and the scan duration, an iterative image reconstruction algorithm for limited-view and low-dose tomography based on compressed sensing theory has been developed. The total variation regulation was added in the reconstruction process to improve SNR (Signal to Noise Ratio) and reduce the artifacts caused by the limited angle sampling. Maximization of maximum likelihood of the estimated image and the measured data and minimization of the total variation of the image are alternative implemented. By using this advanced algorithm, the reconstruction process is able to achieve image quality matching or exceeding that of normal scan with only half of the injection radiopharmaceutical dose.

preprint2013arXiv

Interfacial Properties of Bilayer and Trilayer Graphene on Metal Substrates

One popular approach to prepare graphene is to grow them on transition metal substrates via chemical vapor deposition. By using the density functional theory with dispersion correction, we systematically investigate for the first time the interfacial properties of bilayer (BLG) and trilayer graphene (TLG) on metal substrates. Three categories of interfacial structures are revealed. The adsorption of B(T)LG on Al, Ag, Cu, Au, and Pt substrates is a weak physisorption, but a band gap can be opened. The adsorption of B(T)LG on Ti, Ni, and Co substrates is a strong chemisorption, and a stacking-insensitive band gap is opened for the two uncontacted layers of TLG. The adsorption of B(T)LG on Pd substrate is a weaker chemisorption, with a band gap opened for the uncontacted layers. This fundamental study also helps for B(T)LG device study due to inevitable graphene/metal contact.

preprint2013arXiv

MoS2/MX2 heterobilayers: Bandgap engineering via tensile strain or external electrical field

We have performed a comprehensive first-principles study of the electronic and magnetic properties of two-dimensional (2D) transition-metal dichalcogenide (TMD) heterobilayers MX2/MoS2 (M = Mo, Cr, W, Fe, V; X = S, Se). For M = Mo, Cr, W; X=S, Se, all heterobilayers show semiconducting characteristics with an indirect bandgap with the exception of the WSe2/MoS2 heterobilayer which retains the direct-band-gap character of the constituent monolayer. For M = Fe, V; X = S, Se, the MX2/MoS2 heterobilayers exhibit metallic characters. Particular attention of this study has been focused on engineering bandgap of the TMD heterobilayer materials via application of either a tensile strain or an external electric field. We find that with increasing either the biaxial or uniaxial tensile strain, the MX2/MoS2 (M=Mo, Cr, W; X=S, Se) heterobilayers can undergo a semiconductor-to-metal transition. For the WSe2/MoS2 heterobilayer, a direct-to-indirect bandgap transition may occur beyond a critical biaxial or uniaxial strain. For M (=Fe, V) and X (=S, Se), the magnetic moments of both metal and chalcogen atoms are enhanced when the MX2/MoS2 heterobilayers are under a biaxial tensile strain. Moreover, the bandgap of MX2/MoS2 (M=Mo, Cr, W; X=S, Se) heterobilayers can be reduced by the electric field. For two heterobilayers MSe2/MoS2 (M=Mo, Cr), PBE calculations suggest that the indirect-to-direct bandgap transition may occur under an external electric field. The transition is attributed to the enhanced spontaneous polarization. The tunable bandgaps in general and possible indirect-direct bandgap transitions due to tensile strain or external electric field endow the TMD heterobilayer materials a viable candidate for optoelectronic applications.

preprint2013arXiv

Rigidity of asymptotically conical shrinking gradient Ricci solitons

We show that if two gradient Ricci solitons are asymptotic along some end of each to the same regular cone, then the soliton metrics must be isometric on some neighborhoods of infinity of these ends. Our theorem imposes no restrictions on the behavior of the metrics off of the ends in question and in particular does not require their geodesic completeness. As an application, we prove that the only complete connected gradient shrinking Ricci soliton asymptotic to a rotationally symmetric cone is the Gaussian soliton on R^n.

preprint2013arXiv

Tunable band gap in few-layer graphene by surface adsorption

There is a tunable band gap in ABC-stacked few-layer graphene (FLG) via applying a vertical electric field, but the operation of FLG-based field effect transistor (FET) requires two gates to create a band gap and tune channel's conductance individually. Using first principle calculations, we propose an alternative scheme to open a band gap in ABC-stacked FLG namely via single-side adsorption. The band gap is generally proportional to the charge transfer density. The capability to open a band gap of metal adsorption decreases in this order: K/Al > Cu/Ag/Au > Pt. Moreover, we find that even the band gap of ABA-stacked FLG can be opened if the bond symmetry is broken. Finally, a single-gated FET based on Cu-adsorbed ABC-stacked trilayer graphene is simulated. A clear transmission gap is observed, which is comparable with the band gap. This renders metal-adsorbed FLG a promising channel in a single-gated FET device.

preprint2012arXiv

A Parallel Auxiliary Grid AMG Method for GPU

In this paper, we develop a new parallel auxiliary grid algebraic multigrid (AMG) method to leverage the power of graphic processing units (GPUs). In the construction of the hierarchical coarse grid, we use a simple and fixed coarsening procedure based on a region quadtree generated from an auxiliary grid. This allows us to explicitly control the sparsity patterns and operator complexities of the AMG solver. This feature provides (nearly) optimal load balancing and predictable communication patterns, which makes our new algorithm suitable for parallel computing, especially on GPU. We also design a parallel smoother based on the special coloring of the quadtree to accelerate the convergence rate and improve the parallel performance of this solver. Based on the CUDA toolkit [40], we implemented our new parallel auxiliary grid AMG method on GPU and the numerical results of this implementation demonstrate the efficiency of our new method. The results achieve an average speedup of over 4 on quasi-uniform grids and 2 on shape regular grids when compared to the AMG implementation in CUSP.

preprint2010arXiv

Harmonic map heat flow with rough boundary data

Let $B_1$ be the unit open disk in $\Real^2$ and $M$ be a closed Riemannian manifold. In this note, we first prove the uniqueness for weak solutions of the harmonic map heat flow in $H^1([0,T]\times B_1,M)$ whose energy is non-increasing in time, given initial data $u_0\in H^1(B_1,M)$ and boundary data $γ=u_0|_{\partial B_1}$. Previously, this uniqueness result was obtained by Rivière (when $M$ is the round sphere and the energy of initial data is small) and Freire (when $M$ is an arbitrary closed Riemannian manifold), given that $u_0\in H^1(B_1,M)$ and $γ=u_0|_{\partial B_1}\in H^{3/2}(\partial B_1)$. The point of our uniqueness result is that no boundary regularity assumption is needed. Second, we prove the exponential convergence of the harmonic map heat flow, assuming that energy is small at all times.