Researcher profile

Li Lin

Li Lin contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate

Trust snapshot

Quick read

Trust 21 - EmergingVerification L1Unclaimed author
21works
0followers
12topics
4close collaborators

Actions

Decide how to stay connected

Follow researcher0

Identity and collaboration

How to connect with this researcher

Claiming links this public author record to a researcher profile and unlocks direct collaboration workflows.

Log in to claim

Direct collaboration

Open a focused conversation when the fit is right

Claim this author entity first to unlock direct invitations.

Research graph

See the researcher in context

Open full explorer

Inspect adjacent work, topics, institutions and collaborators without jumping out to a separate graph page.

Building this graph slice

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Published work

21 published item(s)

preprint2026arXiv

An Uncertainty-Aware Generalization Framework for Cardiovascular Image Segmentation

Deep learning models have achieved significant success in segmenting cardiovascular structures, but there is a growing need to improve their generalization and robustness. Current methods often face challenges such as overfitting and limited accuracy, largely due to their reliance on large annotated datasets and limited optimization techniques. This paper introduces the UU-Mamba model, an extension of the U-Mamba architecture, designed to address these challenges in both cardiac and vascular segmentation. By incorporating Sharpness-Aware Minimization (SAM), the model enhances generalization by seeking flatter minima in the loss landscape. Additionally, we propose an uncertainty-aware loss function that integrates region-based, distribution-based, and pixel-based components, improving segmentation accuracy by capturing both local and global features. We expand our evaluations on the ImageCAS (coronary artery) and Aorta (aortic branches and zones) datasets, which present more complex segmentation challenges than the ACDC dataset (left and right ventricles) used in prior work, showcasing the model's adaptability and resilience. Our results confirm UU-Mamba's superior performance compared to leading models such as TransUNet, Swin-Unet, nnUNet, and nnFormer. We also provide a more in-depth assessment of the model's robustness and segmentation accuracy through extensive experiments.

preprint2026arXiv

MUSE: Resolving Manifold Misalignment in Visual Tokenization via Topological Orthogonality

Unified visual tokenization faces a fundamental trade-off between high-fidelity pixel reconstruction (spatial equivariance) and semantic abstraction (conceptual invariance). We attribute this conflict to Manifold Misalignment: naive joint optimization induces opposing gradients, creating a zero-sum game between reconstruction and perception. To address this, we propose MUSE, a framework based on Topological Orthogonality. By treating Structure as an orthogonal bridge, MUSE decouples optimization within Transformers: structural gradients refine attention topology, while semantic gradients update feature values. This turns destructive interference into Mutual Reinforcement. Experiments show that MUSE breaks the trade-off, achieving state-of-the-art generation quality (gFID 3.08) and surpassing its teacher InternViT-300M in linear probing (85.2\% vs. 82.5\%), demonstrating that structurally aligned reconstruction can enhance semantic perception. Code is available at https://github.com/PanqiYang1/MUSE.

preprint2022arXiv

A Multi-level Supervised Contrastive Learning Framework for Low-Resource Natural Language Inference

Natural Language Inference (NLI) is a growingly essential task in natural language understanding, which requires inferring the relationship between the sentence pairs (premise and hypothesis). Recently, low-resource natural language inference has gained increasing attention, due to significant savings in manual annotation costs and a better fit with real-world scenarios. Existing works fail to characterize discriminative representations between different classes with limited training data, which may cause faults in label prediction. Here we propose a multi-level supervised contrastive learning framework named MultiSCL for low-resource natural language inference. MultiSCL leverages a sentence-level and pair-level contrastive learning objective to discriminate between different classes of sentence pairs by bringing those in one class together and pushing away those in different classes. MultiSCL adopts a data augmentation module that generates different views for input samples to better learn the latent representation. The pair-level representation is obtained from a cross attention module. We conduct extensive experiments on two public NLI datasets in low-resource settings, and the accuracy of MultiSCL exceeds other models by 3.1% on average. Moreover, our method outperforms the previous state-of-the-art method on cross-domain tasks of text classification.

preprint2022arXiv

AADG: Automatic Augmentation for Domain Generalization on Retinal Image Segmentation

Convolutional neural networks have been widely applied to medical image segmentation and have achieved considerable performance. However, the performance may be significantly affected by the domain gap between training data (source domain) and testing data (target domain). To address this issue, we propose a data manipulation based domain generalization method, called Automated Augmentation for Domain Generalization (AADG). Our AADG framework can effectively sample data augmentation policies that generate novel domains and diversify the training set from an appropriate search space. Specifically, we introduce a novel proxy task maximizing the diversity among multiple augmented novel domains as measured by the Sinkhorn distance in a unit sphere space, making automated augmentation tractable. Adversarial training and deep reinforcement learning are employed to efficiently search the objectives. Quantitative and qualitative experiments on 11 publicly-accessible fundus image datasets (four for retinal vessel segmentation, four for optic disc and cup (OD/OC) segmentation and three for retinal lesion segmentation) are comprehensively performed. Two OCTA datasets for retinal vasculature segmentation are further involved to validate cross-modality generalization. Our proposed AADG exhibits state-of-the-art generalization performance and outperforms existing approaches by considerable margins on retinal vessel, OD/OC and lesion segmentation tasks. The learned policies are empirically validated to be model-agnostic and can transfer well to other models. The source code is available at https://github.com/CRazorback/AADG.

preprint2022arXiv

COROLLA: An Efficient Multi-Modality Fusion Framework with Supervised Contrastive Learning for Glaucoma Grading

Glaucoma is one of the ophthalmic diseases that may cause blindness, for which early detection and treatment are very important. Fundus images and optical coherence tomography (OCT) images are both widely-used modalities in diagnosing glaucoma. However, existing glaucoma grading approaches mainly utilize a single modality, ignoring the complementary information between fundus and OCT. In this paper, we propose an efficient multi-modality supervised contrastive learning framework, named COROLLA, for glaucoma grading. Through layer segmentation as well as thickness calculation and projection, retinal thickness maps are extracted from the original OCT volumes and used as a replacing modality, resulting in more efficient calculations with less memory usage. Given the high structure and distribution similarities across medical image samples, we employ supervised contrastive learning to increase our models' discriminative power with better convergence. Moreover, feature-level fusion of paired fundus image and thickness map is conducted for enhanced diagnosis accuracy. On the GAMMA dataset, our COROLLA framework achieves overwhelming glaucoma grading performance compared to state-of-the-art methods.

preprint2022arXiv

DS3-Net: Difficulty-perceived Common-to-T1ce Semi-Supervised Multimodal MRI Synthesis Network

Contrast-enhanced T1 (T1ce) is one of the most essential magnetic resonance imaging (MRI) modalities for diagnosing and analyzing brain tumors, especially gliomas. In clinical practice, common MRI modalities such as T1, T2, and fluid attenuation inversion recovery are relatively easy to access while T1ce is more challenging considering the additional cost and potential risk of allergies to the contrast agent. Therefore, it is of great clinical necessity to develop a method to synthesize T1ce from other common modalities. Current paired image translation methods typically have the issue of requiring a large amount of paired data and do not focus on specific regions of interest, e.g., the tumor region, in the synthesization process. To address these issues, we propose a Difficulty-perceived common-to-T1ce Semi-Supervised multimodal MRI Synthesis network (DS3-Net), involving both paired and unpaired data together with dual-level knowledge distillation. DS3-Net predicts a difficulty map to progressively promote the synthesis task. Specifically, a pixelwise constraint and a patchwise contrastive constraint are guided by the predicted difficulty map. Through extensive experiments on the publiclyavailable BraTS2020 dataset, DS3-Net outperforms its supervised counterpart in each respect. Furthermore, with only 5% paired data, the proposed DS3-Net achieves competitive performance with state-of-theart image translation methods utilizing 100% paired data, delivering an average SSIM of 0.8947 and an average PSNR of 23.60.

preprint2022arXiv

JOINED : Prior Guided Multi-task Learning for Joint Optic Disc/Cup Segmentation and Fovea Detection

Fundus photography has been routinely used to document the presence and severity of various retinal degenerative diseases such as age-related macula degeneration, glaucoma, and diabetic retinopathy, for which the fovea, optic disc (OD), and optic cup (OC) are important anatomical landmarks. Identification of those anatomical landmarks is of great clinical importance. However, the presence of lesions, drusen, and other abnormalities during retinal degeneration severely complicates automatic landmark detection and segmentation. Most existing works treat the identification of each landmark as a single task and typically do not make use of any clinical prior information. In this paper, we present a novel method, named JOINED, for prior guided multi-task learning for joint OD/OC segmentation and fovea detection. An auxiliary branch for distance prediction, in addition to a segmentation branch and a detection branch, is constructed to effectively utilize the distance information from each image pixel to landmarks of interest. Our proposed JOINED pipeline consists of a coarse stage and a fine stage. At the coarse stage, we obtain the OD/OC coarse segmentation and the heatmap localization of fovea through a joint segmentation and detection module. Afterwards, we crop the regions of interest for subsequent fine processing and use predictions obtained at the coarse stage as additional information for better performance and faster convergence. Experimental results reveal that our proposed JOINED outperforms existing state-of-the-art approaches on the publicly-available GAMMA, PALM, and REFUGE datasets of fundus images. Furthermore, JOINED ranked the 5th on the OD/OC segmentation and fovea detection tasks in the GAMMA challenge hosted by the MICCAI2021 workshop OMIA8.

preprint2022arXiv

Multi-modal Brain Tumor Segmentation via Missing Modality Synthesis and Modality-level Attention Fusion

Multi-modal magnetic resonance (MR) imaging provides great potential for diagnosing and analyzing brain gliomas. In clinical scenarios, common MR sequences such as T1, T2 and FLAIR can be obtained simultaneously in a single scanning process. However, acquiring contrast enhanced modalities such as T1ce requires additional time, cost, and injection of contrast agent. As such, it is clinically meaningful to develop a method to synthesize unavailable modalities which can also be used as additional inputs to downstream tasks (e.g., brain tumor segmentation) for performance enhancing. In this work, we propose an end-to-end framework named Modality-Level Attention Fusion Network (MAF-Net), wherein we innovatively conduct patchwise contrastive learning for extracting multi-modal latent features and dynamically assigning attention weights to fuse different modalities. Through extensive experiments on BraTS2020, our proposed MAF-Net is found to yield superior T1ce synthesis performance (SSIM of 0.8879 and PSNR of 22.78) and accurate brain tumor segmentation (mean Dice scores of 67.9%, 41.8% and 88.0% on segmenting the tumor core, enhancing tumor and whole tumor).

preprint2022arXiv

Pair-Level Supervised Contrastive Learning for Natural Language Inference

Natural language inference (NLI) is an increasingly important task for natural language understanding, which requires one to infer the relationship between the sentence pair (premise and hypothesis). Many recent works have used contrastive learning by incorporating the relationship of the sentence pair from NLI datasets to learn sentence representation. However, these methods only focus on comparisons with sentence-level representations. In this paper, we propose a Pair-level Supervised Contrastive Learning approach (PairSCL). We adopt a cross attention module to learn the joint representations of the sentence pairs. A contrastive learning objective is designed to distinguish the varied classes of sentence pairs by pulling those in one class together and pushing apart the pairs in other classes. We evaluate PairSCL on two public datasets of NLI where the accuracy of PairSCL outperforms other methods by 2.1% on average. Furthermore, our method outperforms the previous state-of-the-art method on seven transfer tasks of text classification.

preprint2022arXiv

Semantic Enhanced Text-to-SQL Parsing via Iteratively Learning Schema Linking Graph

The generalizability to new databases is of vital importance to Text-to-SQL systems which aim to parse human utterances into SQL statements. Existing works achieve this goal by leveraging the exact matching method to identify the lexical matching between the question words and the schema items. However, these methods fail in other challenging scenarios, such as the synonym substitution in which the surface form differs between the corresponding question words and schema items. In this paper, we propose a framework named ISESL-SQL to iteratively build a semantic enhanced schema-linking graph between question tokens and database schemas. First, we extract a schema linking graph from PLMs through a probing procedure in an unsupervised manner. Then the schema linking graph is further optimized during the training process through a deep graph learning method. Meanwhile, we also design an auxiliary task called graph regularization to improve the schema information mentioned in the schema-linking graph. Extensive experiments on three benchmarks demonstrate that ISESL-SQL could consistently outperform the baselines and further investigations show its generalizability and robustness.

preprint2022arXiv

Transcranial photoacoustic computed tomography of human brain function

Herein we report the first in-human transcranial imaging of brain function using photoacoustic computed tomography. Functional responses to benchmark motor tasks were imaged on both the skull-less and the skull-intact hemispheres of a hemicraniectomy patient. The observed brain responses in these preliminary results demonstrate the potential of photoacoustic computed tomography for achieving transcranial functional imaging.

preprint2022arXiv

Uni4Eye: Unified 2D and 3D Self-supervised Pre-training via Masked Image Modeling Transformer for Ophthalmic Image Classification

A large-scale labeled dataset is a key factor for the success of supervised deep learning in computer vision. However, a limited number of annotated data is very common, especially in ophthalmic image analysis, since manual annotation is time-consuming and labor-intensive. Self-supervised learning (SSL) methods bring huge opportunities for better utilizing unlabeled data, as they do not need massive annotations. With an attempt to use as many as possible unlabeled ophthalmic images, it is necessary to break the dimension barrier, simultaneously making use of both 2D and 3D images. In this paper, we propose a universal self-supervised Transformer framework, named Uni4Eye, to discover the inherent image property and capture domain-specific feature embedding in ophthalmic images. Uni4Eye can serve as a global feature extractor, which builds its basis on a Masked Image Modeling task with a Vision Transformer (ViT) architecture. We employ a Unified Patch Embedding module to replace the origin patch embedding module in ViT for jointly processing both 2D and 3D input images. Besides, we design a dual-branch multitask decoder module to simultaneously perform two reconstruction tasks on the input image and its gradient map, delivering discriminative representations for better convergence. We evaluate the performance of our pre-trained Uni4Eye encoder by fine-tuning it on six downstream ophthalmic image classification tasks. The superiority of Uni4Eye is successfully established through comparisons to other state-of-the-art SSL pre-training methods.

preprint2022arXiv

Unsupervised Domain Adaptation for Cross-Modality Retinal Vessel Segmentation via Disentangling Representation Style Transfer and Collaborative Consistency Learning

Various deep learning models have been developed to segment anatomical structures from medical images, but they typically have poor performance when tested on another target domain with different data distribution. Recently, unsupervised domain adaptation methods have been proposed to alleviate this so-called domain shift issue, but most of them are designed for scenarios with relatively small domain shifts and are likely to fail when encountering a large domain gap. In this paper, we propose DCDA, a novel cross-modality unsupervised domain adaptation framework for tasks with large domain shifts, e.g., segmenting retinal vessels from OCTA and OCT images. DCDA mainly consists of a disentangling representation style transfer (DRST) module and a collaborative consistency learning (CCL) module. DRST decomposes images into content components and style codes and performs style transfer and image reconstruction. CCL contains two segmentation models, one for source domain and the other for target domain. The two models use labeled data (together with the corresponding transferred images) for supervised learning and perform collaborative consistency learning on unlabeled data. Each model focuses on the corresponding single domain and aims to yield an expertized domain-specific segmentation model. Through extensive experiments on retinal vessel segmentation, our framework achieves Dice scores close to target-trained oracle both from OCTA to OCT and from OCT to OCTA, significantly outperforming other state-of-the-art methods.

preprint2022arXiv

What Makes the Story Forward? Inferring Commonsense Explanations as Prompts for Future Event Generation

Prediction over event sequences is critical for many real-world applications in Information Retrieval and Natural Language Processing. Future Event Generation (FEG) is a challenging task in event sequence prediction because it requires not only fluent text generation but also commonsense reasoning to maintain the logical coherence of the entire event story. In this paper, we propose a novel explainable FEG framework, Coep. It highlights and integrates two types of event knowledge, sequential knowledge of direct event-event relations and inferential knowledge that reflects the intermediate character psychology between events, such as intents, causes, reactions, which intrinsically pushes the story forward. To alleviate the knowledge forgetting issue, we design two modules, Im and Gm, for each type of knowledge, which are combined via prompt tuning. First, Im focuses on understanding inferential knowledge to generate commonsense explanations and provide a soft prompt vector for Gm. We also design a contrastive discriminator for better generalization ability. Second, Gm generates future events by modeling direct sequential knowledge with the guidance of Im. Automatic and human evaluation demonstrate that our approach can generate more coherent, specific, and logical future events.

preprint2021arXiv

Towards the fabrication of a morphing plasma source for biomedical applications

A new design of plasma source that merges the main features of capacitive dielectric barrier discharge (DBD) and cold atmospheric plasma jet (CAPJ) is discussed. The DBD system consists of a flexible, porous matrix consisting of silica aerogel, which is comprised between two planar-parallel electrodes. The supply of helium flow submitted to a sinusoidal voltage of 5-9 kV in amplitude and 15 kHz in frequency provides a 2D-distribution of plasma jets that propagate around 1 cm beyond the active DBD region. The plasma multi-jet system is aimed at surface treatment of 3D objects and large areas. CAPJ performance as a hypothetical morphing source in flat and bent configurations is discussed. Optical emission spectroscopy (OES) diagnostics has provided the composition of the CAPJ through the aerogel layer. This novel source is promising for situations requiring thorough adaptation of plasma parameters to delicate samples, as for example wound healing and treatment of surgical margins in plasma-based cancer surgery.

preprint2020arXiv

A New Physically Triggered Cell Death via Transbarrier Contactless Cold Atmospheric Plasma Treatment of Cancer Cells

For years, extensive efforts have been made to discover effective, non-invasive anti-cancer therapies. Cold atmospheric plasma (CAP), is a near room temperature ionized gas composed of reactive species, charged particles, neutral particles, and electrons. CAP also has several physical factors including thermal radiation, ultraviolet (UV) radiation, and electromagnetic (EM) waves. Most of the previously reported biological effects of CAP have relied on direct contact between bulk plasma and cells, resulting in the chemical effects generally seen after CAP treatment. In this paper, we demonstrate that the electromagnetic emission produced by CAP can lead to the death of B16F10 melanoma cancer cells via a transbarrier contactless method. When compared with the effect of reactive species, the effect of the physical factors causes much greater growth inhibition. The physical-triggered growth inhibition is due to a new type of cell death, characterized by rapid leakage of bulk water from the cells, resulting in bubbles on the cell membrane, and cytoplasm shrinkage. The results of this study introduce a new possible mechanism of CAP induced cancer cell death and build a foundation for CAP to be used as a non-invasive cancer treatment in the future.

preprint2020arXiv

An Approach for Process Model Extraction By Multi-Grained Text Classification

Process model extraction (PME) is a recently emerged interdiscipline between natural language processing (NLP) and business process management (BPM), which aims to extract process models from textual descriptions. Previous process extractors heavily depend on manual features and ignore the potential relations between clues of different text granularities. In this paper, we formalize the PME task into the multi-grained text classification problem, and propose a hierarchical neural network to effectively model and extract multi-grained information without manually-defined procedural features. Under this structure, we accordingly propose the coarse-to-fine (grained) learning mechanism, training multi-grained tasks in coarse-to-fine grained order to share the high-level knowledge for the low-level tasks. To evaluate our approach, we construct two multi-grained datasets from two different domains and conduct extensive experiments from different dimensions. The experimental results demonstrate that our approach outperforms the state-of-the-art methods with statistical significance and further investigations demonstrate its effectiveness.

preprint2020arXiv

Effective reduction for a nonlocal Zakai stochastic partial differential equation in data assimilation

We study the effective reduction for a nonlocal stochastic partial differential equation with oscillating coefficients. The nonlocal operator in this stochastic partial differential equation is the generator of non-Gaussian Lévy processes, with either \textbf{integrable} or \textbf{non-integrable} jump kernels. We examine the limiting behavior of this equation as a scaling parameter tends to zero, and derive a reduced (local or nonlocal) effective equation. In particular, this work leads to an effective reduction for a data assimilation system with Lévy noise, by examining the corresponding nonlocal Zakai stochastic partial differential equation. We show that the probability density for the reduced data assimilation system approximates that for the original system.

preprint2020arXiv

Realization and transport investigation of a single layer-twisted bilayer graphene junction

We report on low-temperature transport study of a single layer graphene (SLG)-twisted bilayer graphene (tBLG) junction device. The SLG-tBLG junction in the device is grown by chemical vapor deposition and the device is fabricated in a Hall-bar configuration on Si/SiO$_2$ substrate. The longitudinal resistances across the SLG-tBLG junction (cross-junction resistances) on the two sides of the Hall bar and the Hall resistances of SLG and tBLG in the device are measured. In the quantum Hall regime, the measurements show that the measured cross-junction resistances exhibit a series of new quantized plateaus and the appearance of these resistance plateaus can be attributed to the presence of the well-defined edge-channel transport along the SLG-tBLG junction interface. The measurements also show that the difference between the cross-junction resistances measured on the two sides of the Hall-bar provides a sensitive measure to the edge channel transport characteristics in the two graphene layers that constitute the SLG-tBLG junction and to degeneracy lifting of the Landau levels in the tBLG layer. Temperature dependent measurements of the cross-junction resistance in the quantum Hall regime are also carried out and the influence of the transverse transport of the bulk Landau levels on the edge channel transport along the SLG-tBLG junction interface are extracted. These results enrich the understanding of the charge transport across interfaces in graphene hybrid structures and open up new opportunities for probing exotic quantum phenomena in graphene devices.

preprint2018arXiv

Transport signatures of relativistic quantum scars in a graphene cavity

We study a relativistic quantum cavity system realized by etching out from a graphene sheet by quantum transport measurements and theoretical calculations. The conductance of the graphene cavity has been measured as a function of the back gate voltage (or the Fermi energy) and the magnetic field applied perpendicular to the graphene sheet, and characteristic conductance contour patterns are observed in the measurements. In particular, two types of high conductance contour lines, i.e., straight and parabolic-like high conductance contour lines, are found in the measurements. The theoretical calculations are performed within the framework of tight-binding approach and Green's function formalism. Similar characteristic high conductance contour features as in the experiments are found in the calculations. The wave functions calculated at points selected along a straight conductance contour line are found to be dominated by a chain of scars of high probability distributions arranged as a necklace following the shape of cavity and the current density distributions calculated at these point are dominated by an overall vortex in the cavity. These characteristics are found to be insensitive to increasing magnetic field. However, the wave function probability distributions and the current density distributions calculated at points selected along a parabolic-like contour line show a clear dependence on increasing magnetic field, and the current density distributions at these points are characterized by the complex formation of several localized vortices in the cavity. Our work brings a new insight into quantum chaos in relativistic particle systems and would greatly stimulate experimental and theoretical efforts towards this still emerging field.