Trust snapshot

Quick read

Trust 21 - EmergingVerification L1Unclaimed author
19works
0followers
14topics
4close collaborators

Actions

Decide how to stay connected

Follow researcher0

Identity and collaboration

How to connect with this researcher

Claiming links this public author record to a researcher profile and unlocks direct collaboration workflows.

Log in to claim

Direct collaboration

Open a focused conversation when the fit is right

Claim this author entity first to unlock direct invitations.

Research graph

See the researcher in context

Open full explorer

Inspect adjacent work, topics, institutions and collaborators without jumping out to a separate graph page.

Building this graph slice

BZPEER is loading the nearby papers, people, topics and institutions for this page.

Published work

19 published item(s)

preprint2026arXiv

MiMo-V2-Flash Technical Report

We present MiMo-V2-Flash, a Mixture-of-Experts (MoE) model with 309B total parameters and 15B active parameters, designed for fast, strong reasoning and agentic capabilities. MiMo-V2-Flash adopts a hybrid attention architecture that interleaves Sliding Window Attention (SWA) with global attention, with a 128-token sliding window under a 5:1 hybrid ratio. The model is pre-trained on 27 trillion tokens with Multi-Token Prediction (MTP), employing a native 32k context length and subsequently extended to 256k. To efficiently scale post-training compute, MiMo-V2-Flash introduces a novel Multi-Teacher On-Policy Distillation (MOPD) paradigm. In this framework, domain-specialized teachers (e.g., trained via large-scale reinforcement learning) provide dense and token-level reward, enabling the student model to perfectly master teacher expertise. MiMo-V2-Flash rivals top-tier open-weight models such as DeepSeek-V3.2 and Kimi-K2, despite using only 1/2 and 1/3 of their total parameters, respectively. During inference, by repurposing MTP as a draft model for speculative decoding, MiMo-V2-Flash achieves up to 3.6 acceptance length and 2.6x decoding speedup with three MTP layers. We open-source both the model weights and the three-layer MTP weights to foster open research and community collaboration.

preprint2026arXiv

PepSpecBench: A Unified Evaluation Benchmark for Peptide Tandem Mass Spectrometry Prediction

Tandem mass spectrometry provides a high-throughput framework for identifying and quantifying proteins in complex biological samples. In computational proteomics, predicting peptide MS/MS spectra is a critical task, enabling downstream applications such as large-scale peptide identification and quantification. While deep learning architectures have substantially improved prediction accuracy, three evaluation challenges obscure the true progress of the field. First, inconsistent data preprocessing and incompatible model output spaces hinder fair model comparison. Second, flawed data splitting strategies can permit hidden sequence leakage and inflate reported performance. Third, existing evaluations typically lack comprehensive cross-species benchmarking and systematic assessment of model robustness to influential experimental conditions. To address these challenges, we propose PepSpecBench, a unified benchmark for peptide MS/MS spectrum prediction. PepSpecBench standardizes data preprocessing across complementary public datasets, enforces a strict backbone-disjoint splitting strategy to eliminate sequence leakage, and evaluates diverse architectures within a shared fragment-ion representation space. It further introduces a comprehensive multi-species evaluation suite and physically grounded metadata perturbation probes to assess model robustness and instrument awareness. We uncover previously unrecognized performance discrepancies and robustness limitations across six representative models, providing actionable insights for future model design, evaluation and practical deployment.

preprint2024arXiv

Graph-level Protein Representation Learning by Structure Knowledge Refinement

This paper focuses on learning representation on the whole graph level in an unsupervised manner. Learning graph-level representation plays an important role in a variety of real-world issues such as molecule property prediction, protein structure feature extraction, and social network analysis. The mainstream method is utilizing contrastive learning to facilitate graph feature extraction, known as Graph Contrastive Learning (GCL). GCL, although effective, suffers from some complications in contrastive learning, such as the effect of false negative pairs. Moreover, augmentation strategies in GCL are weakly adaptive to diverse graph datasets. Motivated by these problems, we propose a novel framework called Structure Knowledge Refinement (SKR) which uses data structure to determine the probability of whether a pair is positive or negative. Meanwhile, we propose an augmentation strategy that naturally preserves the semantic meaning of the original data and is compatible with our SKR framework. Furthermore, we illustrate the effectiveness of our SKR framework through intuition and experiments. The experimental results on the tasks of graph-level classification demonstrate that our SKR framework is superior to most state-of-the-art baselines.

preprint2023arXiv

Clarkson-McLeod solutions of the fourth Painlevé equation and the parabolic cylinder-kernel determinant

The Clarkson-McLeod solutions of the fourth Painlevé equation behave like $κD_{α-\frac{1}{2}}^2(\sqrt{2}x)$ as $x\rightarrow +\infty$, where $κ$ is some real constant and $D_{α-\frac{1}{2}}(x)$ is the parabolic cylinder function. Using the Deift-Zhou nonlinear steepest descent method, we derive the asymptotic behaviors for this class of solutions as $x\to-\infty$. This completes a proof of Clarkson and McLeod's conjecture on the asymptotics of this family of solutions. The total integrals of the Clarkson-McLeod solutions and the asymptotic approximations of the $σ$-form of this family of solutions are also derived. Furthermore, we find a determinantal representation of the $σ$-form of the Clarkson-McLeod solutions via an integrable operator with the parabolic cylinder kernel.

preprint2022arXiv

A Survey of Pretraining on Graphs: Taxonomy, Methods, and Applications

Pretrained Language Models (PLMs) such as BERT have revolutionized the landscape of Natural Language Processing (NLP). Inspired by their proliferation, tremendous efforts have been devoted to Pretrained Graph Models (PGMs). Owing to the powerful model architectures of PGMs, abundant knowledge from massive labeled and unlabeled graph data can be captured. The knowledge implicitly encoded in model parameters can benefit various downstream tasks and help to alleviate several fundamental issues of learning on graphs. In this paper, we provide the first comprehensive survey for PGMs. We firstly present the limitations of graph representation learning and thus introduce the motivation for graph pre-training. Then, we systematically categorize existing PGMs based on a taxonomy from four different perspectives. Next, we present the applications of PGMs in social recommendation and drug discovery. Finally, we outline several promising research directions that can serve as a guideline for future research.

preprint2022arXiv

AI-based Medical e-Diagnosis for Fast and Automatic Ventricular Volume Measurement in the Patients with Normal Pressure Hydrocephalus

Based on CT and MRI images acquired from normal pressure hydrocephalus (NPH) patients, using machine learning methods, we aim to establish a multi-modal and high-performance automatic ventricle segmentation method to achieve efficient and accurate automatic measurement of the ventricular volume. First, we extract the brain CT and MRI images of 143 definite NPH patients. Second, we manually label the ventricular volume (VV) and intracranial volume (ICV). Then, we use machine learning method to extract features and establish automatic ventricle segmentation model. Finally, we verify the reliability of the model and achieved automatic measurement of VV and ICV. In CT images, the Dice similarity coefficient (DSC), Intraclass Correlation Coefficient (ICC), Pearson correlation, and Bland-Altman analysis of the automatic and manual segmentation result of the VV were 0.95, 0.99, 0.99, and 4.2$\pm$2.6 respectively. The results of ICV were 0.96, 0.99, 0.99, and 6.0$\pm$3.8 respectively. The whole process takes 3.4$\pm$0.3 seconds. In MRI images, the DSC, ICC, Pearson correlation, and Bland-Altman analysis of the automatic and manual segmentation result of the VV were 0.94, 0.99, 0.99, and 2.0$\pm$0.6 respectively. The results of ICV were 0.93, 0.99, 0.99, and 7.9$\pm$3.8 respectively. The whole process took 1.9$\pm$0.1 seconds. We have established a multi-modal and high-performance automatic ventricle segmentation method to achieve efficient and accurate automatic measurement of the ventricular volume of NPH patients. This can help clinicians quickly and accurately understand the situation of NPH patient's ventricles.

preprint2022arXiv

BIOS: An Algorithmically Generated Biomedical Knowledge Graph

Biomedical knowledge graphs (BioMedKGs) are essential infrastructures for biomedical and healthcare big data and artificial intelligence (AI), facilitating natural language processing, model development, and data exchange. For decades, these knowledge graphs have been developed via expert curation; however, this method can no longer keep up with today's AI development, and a transition to algorithmically generated BioMedKGs is necessary. In this work, we introduce the Biomedical Informatics Ontology System (BIOS), the first large-scale publicly available BioMedKG generated completely by machine learning algorithms. BIOS currently contains 4.1 million concepts, 7.4 million terms in two languages, and 7.3 million relation triplets. We present the methodology for developing BIOS, including the curation of raw biomedical terms, computational identification of synonymous terms and aggregation of these terms to create concept nodes, semantic type classification of the concepts, relation identification, and biomedical machine translation. We provide statistics on the current BIOS content and perform preliminary assessments of term quality, synonym grouping, and relation extraction. The results suggest that machine learning-based BioMedKG development is a viable alternative to traditional expert curation.

preprint2022arXiv

Efficient Federated Learning for AIoT Applications Using Knowledge Distillation

As a promising distributed machine learning paradigm, Federated Learning (FL) trains a central model with decentralized data without compromising user privacy, which has made it widely used by Artificial Intelligence Internet of Things (AIoT) applications. However, the traditional FL suffers from model inaccuracy since it trains local models using hard labels of data and ignores useful information of incorrect predictions with small probabilities. Although various solutions try to tackle the bottleneck of the traditional FL, most of them introduce significant communication and memory overhead, making the deployment of large-scale AIoT devices a great challenge. To address the above problem, this paper presents a novel Distillation-based Federated Learning (DFL) architecture that enables efficient and accurate FL for AIoT applications. Inspired by Knowledge Distillation (KD) that can increase the model accuracy, our approach adds the soft targets used by KD to the FL model training, which occupies negligible network resources. The soft targets are generated by local sample predictions of each AIoT device after each round of local training and used for the next round of model training. During the local training of DFL, both soft targets and hard labels are used as approximation objectives of model predictions to improve model accuracy by supplementing the knowledge of soft targets. To further improve the performance of our DFL model, we design a dynamic adjustment strategy for tuning the ratio of two loss functions used in KD, which can maximize the use of both soft targets and hard labels. Comprehensive experimental results on well-known benchmarks show that our approach can significantly improve the model accuracy of FL with both Independent and Identically Distributed (IID) and non-IID data.

preprint2022arXiv

Eliminating Backdoor Triggers for Deep Neural Networks Using Attention Relation Graph Distillation

Due to the prosperity of Artificial Intelligence (AI) techniques, more and more backdoors are designed by adversaries to attack Deep Neural Networks (DNNs).Although the state-of-the-art method Neural Attention Distillation (NAD) can effectively erase backdoor triggers from DNNs, it still suffers from non-negligible Attack Success Rate (ASR) together with lowered classification ACCuracy (ACC), since NAD focuses on backdoor defense using attention features (i.e., attention maps) of the same order. In this paper, we introduce a novel backdoor defense framework named Attention Relation Graph Distillation (ARGD), which fully explores the correlation among attention features with different orders using our proposed Attention Relation Graphs (ARGs). Based on the alignment of ARGs between both teacher and student models during knowledge distillation, ARGD can eradicate more backdoor triggers than NAD. Comprehensive experimental results show that, against six latest backdoor attacks, ARGD outperforms NAD by up to 94.85% reduction in ASR, while ACC can be improved by up to 3.23%.

preprint2022arXiv

Explainable COVID-19 Infections Identification and Delineation Using Calibrated Pseudo Labels

The upheaval brought by the arrival of the COVID-19 pandemic has continued to bring fresh challenges over the past two years. During this COVID-19 pandemic, there has been a need for rapid identification of infected patients and specific delineation of infection areas in computed tomography (CT) images. Although deep supervised learning methods have been established quickly, the scarcity of both image-level and pixel-level labels as well as the lack of explainable transparency still hinder the applicability of AI. Can we identify infected patients and delineate the infections with extreme minimal supervision? Semi-supervised learning has demonstrated promising performance under limited labelled data and sufficient unlabelled data. Inspired by semi-supervised learning, we propose a model-agnostic calibrated pseudo-labelling strategy and apply it under a consistency regularization framework to generate explainable identification and delineation results. We demonstrate the effectiveness of our model with the combination of limited labelled data and sufficient unlabelled data or weakly-labelled data. Extensive experiments have shown that our model can efficiently utilize limited labelled data and provide explainable classification and segmentation results for decision-making in clinical routine. The code is available at https://github.com/ayanglab/XAI COVID-19.

preprint2022arXiv

FedEntropy: Efficient Device Grouping for Federated Learning Using Maximum Entropy Judgment

Along with the popularity of Artificial Intelligence (AI) and Internet-of-Things (IoT), Federated Learning (FL) has attracted steadily increasing attentions as a promising distributed machine learning paradigm, which enables the training of a central model on for numerous decentralized devices without exposing their privacy. However, due to the biased data distributions on involved devices, FL inherently suffers from low classification accuracy in non-IID scenarios. Although various device grouping method have been proposed to address this problem, most of them neglect both i) distinct data distribution characteristics of heterogeneous devices, and ii) contributions and hazards of local models, which are extremely important in determining the quality of global model aggregation. In this paper, we present an effective FL method named FedEntropy with a novel dynamic device grouping scheme, which makes full use of the above two factors based on our proposed maximum entropy judgement heuristic.Unlike existing FL methods that directly aggregate local models returned from all the selected devices, in one FL round FedEntropy firstly makes a judgement based on the pre-collected soft labels of selected devices and then only aggregates the local models that can maximize the overall entropy of these soft labels. Without collecting local models that are harmful for aggregation, FedEntropy can effectively improve global model accuracy while reducing the overall communication overhead. Comprehensive experimental results on well-known benchmarks show that, FedEntropy not only outperforms state-of-the-art FL methods in terms of model accuracy and communication overhead, but also can be integrated into them to enhance their classification performance.

preprint2022arXiv

GitFL: Adaptive Asynchronous Federated Learning using Version Control

As a promising distributed machine learning paradigm that enables collaborative training without compromising data privacy, Federated Learning (FL) has been increasingly used in AIoT (Artificial Intelligence of Things) design. However, due to the lack of efficient management of straggling devices, existing FL methods greatly suffer from the problems of low inference accuracy and long training time. Things become even worse when taking various uncertain factors (e.g., network delays, performance variances caused by process variation) existing in AIoT scenarios into account. To address this issue, this paper proposes a novel asynchronous FL framework named GitFL, whose implementation is inspired by the famous version control system Git. Unlike traditional FL, the cloud server of GitFL maintains a master model (i.e., the global model) together with a set of branch models indicating the trained local models committed by selected devices, where the master model is updated based on both all the pushed branch models and their version information, and only the branch models after the pull operation are dispatched to devices. By using our proposed Reinforcement Learning (RL)-based device selection mechanism, a pulled branch model with an older version will be more likely to be dispatched to a faster and less frequently selected device for the next round of local training. In this way, GitFL enables both effective control of model staleness and adaptive load balance of versioned models among straggling devices, thus avoiding the performance deterioration. Comprehensive experimental results on well-known models and datasets show that, compared with state-of-the-art asynchronous FL methods, GitFL can achieve up to 2.64X training acceleration and 7.88% inference accuracy improvements in various uncertain scenarios.

preprint2022arXiv

HDL: Hybrid Deep Learning for the Synthesis of Myocardial Velocity Maps in Digital Twins for Cardiac Analysis

Synthetic digital twins based on medical data accelerate the acquisition, labelling and decision making procedure in digital healthcare. A core part of digital healthcare twins is model-based data synthesis, which permits the generation of realistic medical signals without requiring to cope with the modelling complexity of anatomical and biochemical phenomena producing them in reality. Unfortunately, algorithms for cardiac data synthesis have been so far scarcely studied in the literature. An important imaging modality in the cardiac examination is three-directional CINE multi-slice myocardial velocity mapping (3Dir MVM), which provides a quantitative assessment of cardiac motion in three orthogonal directions of the left ventricle. The long acquisition time and complex acquisition produce make it more urgent to produce synthetic digital twins of this imaging modality. In this study, we propose a hybrid deep learning (HDL) network, especially for synthetic 3Dir MVM data. Our algorithm is featured by a hybrid UNet and a Generative Adversarial Network with a foreground-background generation scheme. The experimental results show that from temporally down-sampled magnitude CINE images (six times), our proposed algorithm can still successfully synthesise high temporal resolution 3Dir MVM CMR data (PSNR=42.32) with precise left ventricle segmentation (DICE=0.92). These performance scores indicate that our proposed HDL algorithm can be implemented in real-world digital twins for myocardial velocity mapping data simulation. To the best of our knowledge, this work is the first one in the literature investigating digital twins of the 3Dir MVM CMR, which has shown great potential for improving the efficiency of clinical studies via synthesised cardiac data.

preprint2022arXiv

Model-Contrastive Learning for Backdoor Defense

Due to the popularity of Artificial Intelligence (AI) techniques, we are witnessing an increasing number of backdoor injection attacks that are designed to maliciously threaten Deep Neural Networks (DNNs) causing misclassification. Although there exist various defense methods that can effectively erase backdoors from DNNs, they greatly suffer from both high Attack Success Rate (ASR) and a non-negligible loss in Benign Accuracy (BA). Inspired by the observation that a backdoored DNN tends to form a new cluster in its feature spaces for poisoned data, in this paper we propose a novel two-stage backdoor defense method, named MCLDef, based on Model-Contrastive Learning (MCL). In the first stage, our approach performs trigger inversion based on trigger synthesis, where the resultant trigger can be used to generate poisoned data. In the second stage, under the guidance of MCL and our defined positive and negative pairs, MCLDef can purify the backdoored model by pulling the feature representations of poisoned data towards those of their clean data counterparts. Due to the shrunken cluster of poisoned data, the backdoor formed by end-to-end supervised learning is eliminated. Comprehensive experimental results show that, with only 5% of clean data, MCLDef significantly outperforms state-of-the-art defense methods by up to 95.79% reduction in ASR, while in most cases the BA degradation can be controlled within less than 2%. Our code is available at https://github.com/WeCanShow/MCL.

preprint2022arXiv

Singular asymptotics for the Clarkson-McLeod solutions of the fourth Painlevé equation

We consider the Clarkson-McLeod solutions of the fourth Painlevé equation. This family of solutions behave like $κD_{α-\frac{1}{2}}^2(\sqrt{2}x)$ as $x\rightarrow +\infty$, where $κ$ is an arbitrary real constant and $D_{α-\frac{1}{2}}(x)$ is the parabolic cylinder function. Using the Deift-Zhou nonlinear steepest descent method, we obtain the singular asymptotics of the solutions as $x\to-\infty$ when $κ\left( κ-κ^*\right )>0$ for some real constant $κ^*$. The connection formulas are also explicitly evaluated. This proves and extends Clarkson and McLeod's conjecture that when the parameter $κ>κ^*>0$, the Clarkson-McLeod solutions have infinitely many simple poles on the negative real axis.

preprint2022arXiv

Swin Transformer for Fast MRI

Magnetic resonance imaging (MRI) is an important non-invasive clinical tool that can produce high-resolution and reproducible images. However, a long scanning time is required for high-quality MR images, which leads to exhaustion and discomfort of patients, inducing more artefacts due to voluntary movements of the patients and involuntary physiological movements. To accelerate the scanning process, methods by k-space undersampling and deep learning based reconstruction have been popularised. This work introduced SwinMR, a novel Swin transformer based method for fast MRI reconstruction. The whole network consisted of an input module (IM), a feature extraction module (FEM) and an output module (OM). The IM and OM were 2D convolutional layers and the FEM was composed of a cascaded of residual Swin transformer blocks (RSTBs) and 2D convolutional layers. The RSTB consisted of a series of Swin transformer layers (STLs). The shifted windows multi-head self-attention (W-MSA/SW-MSA) of STL was performed in shifted windows rather than the multi-head self-attention (MSA) of the original transformer in the whole image space. A novel multi-channel loss was proposed by using the sensitivity maps, which was proved to reserve more textures and details. We performed a series of comparative studies and ablation studies in the Calgary-Campinas public brain MR dataset and conducted a downstream segmentation experiment in the Multi-modal Brain Tumour Segmentation Challenge 2017 dataset. The results demonstrate our SwinMR achieved high-quality reconstruction compared with other benchmark methods, and it shows great robustness with different undersampling masks, under noise interruption and on different datasets. The code is publicly available at https://github.com/ayanglab/SwinMR.

preprint2021arXiv

Isomonodromy sets of accessory parameters for Heun class equations

In this paper, we consider the monodromy and, in particularly, the isomonodromy sets of accessory parameters for the Heun class equations. We show that the Heun class equations can be obtained as limits of the linear systems associated with the Painlevé equations when the Painlevé transcendents go to one of the actual singular points of the linear systems. While the isomonodromy sets of accessory parameters for the Heun class equations are described by the Taylor or Laurent coefficients of the corresponding Painlevé functions, or the associated tau functions, at the positions of the critical values. As an application of these results, we derive some asymptotic approximations for the isomonodromy sets of accessory parameters in the Heun class equations, including the confluent Heun equation, the doubly-confluent Heun equation and the reduced biconfluent Heun equation.

preprint2021arXiv

Unbox the Black-box for the Medical Explainable AI via Multi-modal and Multi-centre Data Fusion: A Mini-Review, Two Showcases and Beyond

Explainable Artificial Intelligence (XAI) is an emerging research topic of machine learning aimed at unboxing how AI systems' black-box choices are made. This research field inspects the measures and models involved in decision-making and seeks solutions to explain them explicitly. Many of the machine learning algorithms can not manifest how and why a decision has been cast. This is particularly true of the most popular deep neural network approaches currently in use. Consequently, our confidence in AI systems can be hindered by the lack of explainability in these black-box models. The XAI becomes more and more crucial for deep learning powered applications, especially for medical and healthcare studies, although in general these deep neural networks can return an arresting dividend in performance. The insufficient explainability and transparency in most existing AI systems can be one of the major reasons that successful implementation and integration of AI tools into routine clinical practice are uncommon. In this study, we first surveyed the current progress of XAI and in particular its advances in healthcare applications. We then introduced our solutions for XAI leveraging multi-modal and multi-centre data fusion, and subsequently validated in two showcases following real clinical scenarios. Comprehensive quantitative and qualitative analyses can prove the efficacy of our proposed XAI solutions, from which we can envisage successful applications in a broader range of clinical questions.

preprint2020arXiv

Weakly Supervised Deep Learning for COVID-19 Infection Detection and Classification from CT Images

An outbreak of a novel coronavirus disease (i.e., COVID-19) has been recorded in Wuhan, China since late December 2019, which subsequently became pandemic around the world. Although COVID-19 is an acutely treated disease, it can also be fatal with a risk of fatality of 4.03% in China and the highest of 13.04% in Algeria and 12.67% Italy (as of 8th April 2020). The onset of serious illness may result in death as a consequence of substantial alveolar damage and progressive respiratory failure. Although laboratory testing, e.g., using reverse transcription polymerase chain reaction (RT-PCR), is the golden standard for clinical diagnosis, the tests may produce false negatives. Moreover, under the pandemic situation, shortage of RT-PCR testing resources may also delay the following clinical decision and treatment. Under such circumstances, chest CT imaging has become a valuable tool for both diagnosis and prognosis of COVID-19 patients. In this study, we propose a weakly supervised deep learning strategy for detecting and classifying COVID-19 infection from CT images. The proposed method can minimise the requirements of manual labelling of CT images but still be able to obtain accurate infection detection and distinguish COVID-19 from non-COVID-19 cases. Based on the promising results obtained qualitatively and quantitatively, we can envisage a wide deployment of our developed technique in large-scale clinical studies.