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Ju Sun

Ju Sun appears in the imported research catalog. Authorship, coauthor and topic links are available while profile ownership is still unclaimed.

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Machine LearningComputer VisionInformation Theorymath.ITmath.OCApplicationseess.SPeess.IVmath.NAMathematical SoftwareNumerical Analysisphysics.optics

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Published work

13 published item(s)

preprint2026arXiv

A Systematic Evaluation of Imbalance Handling Methods in Biomedical Binary Classification

Objective: The primary goal of this study was to systematically examine the impact of commonly used imbalance handling methods (IHMs) on predictive performance in biomedical binary classification, considering the interplay between model complexity and diverse data modalities. Material and Methods: We evaluated five representative IHMs: random undersampling (RUS), random oversampling (ROS), SMOTE, re-weighting (RW), and direct F1-score optimization (DMO), against a raw training (RAW) baseline. The evaluation encompassed three public biomedical datasets: MIMIC-III (tabular), ADE-Corpus-V2 (text), and MURA (image), spanning three common biomedical data modalities. To assess varying model complexity, we employed a range of architectures, from classical logistic regression and random forest to deep neural networks, including multilayer perceptron (MLP), BiLSTM, BERT, DenseNet, and DINOv2. Results: For simpler models such as logistic regression on tabular data, IHMs yielded no significant advantage over the RAW baseline, aligning with prior findings. However, clear benefits were observed for more complex models and unstructured data: (a) ROS and RW consistently enhanced the performance of powerful models; (b) direct F1-score optimization demonstrated utility primarily for unstructured text and image data; and (c) RUS and SMOTE consistently degraded performance and are therefore not recommended. Conclusion: The effectiveness of IHMs depends on both model complexity and data modality. Performance gains are most pronounced when leveraging appropriate IHMs, such as ROS, RW, and DMO, on high-complexity models.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

NCVX: A User-Friendly and Scalable Package for Nonconvex Optimization in Machine Learning

Optimizing nonconvex (NCVX) problems, especially nonsmooth and constrained ones, is an essential part of machine learning. However, it can be hard to reliably solve such problems without optimization expertise. Existing general-purpose NCVX optimization packages are powerful but typically cannot handle nonsmoothness. GRANSO is among the first optimization solvers targeting general nonsmooth NCVX problems with nonsmooth constraints, but, as it is implemented in MATLAB and requires the user to provide analytical gradients, GRANSO is often not a convenient choice in machine learning (especially deep learning) applications. To greatly lower the technical barrier, we introduce a new software package called NCVX, whose initial release contains the solver PyGRANSO, a PyTorch-enabled port of GRANSO incorporating auto-differentiation, GPU acceleration, tensor input, and support for new QP solvers. NCVX is built on freely available and widely used open-source frameworks, and as a highlight, can solve general constrained deep learning problems, the first of its kind. NCVX is available at https://ncvx.org, with detailed documentation and numerous examples from machine learning and other fields.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Towards Low-Photon Nanoscale Imaging: Holographic Phase Retrieval via Maximum Likelihood Optimization

A new algorithmic framework is presented for holographic phase retrieval via maximum likelihood optimization, which allows for practical and robust image reconstruction. This framework is especially well-suited for holographic coherent diffraction imaging in the \textit{low-photon regime}, where data is highly corrupted by Poisson shot noise. Thus, this methodology provides a viable solution towards the advent of \textit{low-photon nanoscale imaging}, which is a fundamental challenge facing the current state of imaging technologies. Practical optimization algorithms are derived and implemented, and extensive numerical simulations demonstrate significantly improved image reconstruction versus the leading algorithms currently in use. Further experiments compare the performance of popular holographic reference geometries to determine the optimal combined physical setup and algorithm pipeline for practical implementation. Additional features of these methods are also demonstrated, which allow for fewer experimental constraints.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Inverse Problems, Deep Learning, and Symmetry Breaking

In many physical systems, inputs related by intrinsic system symmetries are mapped to the same output. When inverting such systems, i.e., solving the associated inverse problems, there is no unique solution. This causes fundamental difficulties for deploying the emerging end-to-end deep learning approach. Using the generalized phase retrieval problem as an illustrative example, we show that careful symmetry breaking on the training data can help get rid of the difficulties and significantly improve the learning performance. We also extract and highlight the underlying mathematical principle of the proposed solution, which is directly applicable to other inverse problems.

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preprint2016arXiv

Finding a sparse vector in a subspace: Linear sparsity using alternating directions

Is it possible to find the sparsest vector (direction) in a generic subspace $\mathcal{S} \subseteq \mathbb{R}^p$ with $\mathrm{dim}(\mathcal{S})= n < p$? This problem can be considered a homogeneous variant of the sparse recovery problem, and finds connections to sparse dictionary learning, sparse PCA, and many other problems in signal processing and machine learning. In this paper, we focus on a **planted sparse model** for the subspace: the target sparse vector is embedded in an otherwise random subspace. Simple convex heuristics for this planted recovery problem provably break down when the fraction of nonzero entries in the target sparse vector substantially exceeds $O(1/\sqrt{n})$. In contrast, we exhibit a relatively simple nonconvex approach based on alternating directions, which provably succeeds even when the fraction of nonzero entries is $Ω(1)$. To the best of our knowledge, this is the first practical algorithm to achieve linear scaling under the planted sparse model. Empirically, our proposed algorithm also succeeds in more challenging data models, e.g., sparse dictionary learning.

0 citations0 reviewsNo code linkedOpen access
preprint2016arXiv

When Are Nonconvex Problems Not Scary?

In this note, we focus on smooth nonconvex optimization problems that obey: (1) all local minimizers are also global; and (2) around any saddle point or local maximizer, the objective has a negative directional curvature. Concrete applications such as dictionary learning, generalized phase retrieval, and orthogonal tensor decomposition are known to induce such structures. We describe a second-order trust-region algorithm that provably converges to a global minimizer efficiently, without special initializations. Finally we highlight alternatives, and open problems in this direction.

0 citations0 reviewsNo code linkedOpen access
preprint2015arXiv

Complete Dictionary Recovery over the Sphere

We consider the problem of recovering a complete (i.e., square and invertible) matrix $\mathbf A_0$, from $\mathbf Y \in \mathbb R^{n \times p}$ with $\mathbf Y = \mathbf A_0 \mathbf X_0$, provided $\mathbf X_0$ is sufficiently sparse. This recovery problem is central to the theoretical understanding of dictionary learning, which seeks a sparse representation for a collection of input signals, and finds numerous applications in modern signal processing and machine learning. We give the first efficient algorithm that provably recovers $\mathbf A_0$ when $\mathbf X_0$ has $O(n)$ nonzeros per column, under suitable probability model for $\mathbf X_0$. In contrast, prior results based on efficient algorithms provide recovery guarantees when $\mathbf X_0$ has only $O(n^{1-δ})$ nonzeros per column for any constant $δ\in (0, 1)$. Our algorithmic pipeline centers around solving a certain nonconvex optimization problem with a spherical constraint, and hence is naturally phrased in the language of manifold optimization. To show this apparently hard problem is tractable, we first provide a geometric characterization of the high-dimensional objective landscape, which shows that with high probability there are no "spurious" local minima. This particular geometric structure allows us to design a Riemannian trust region algorithm over the sphere that provably converges to one local minimizer with an arbitrary initialization, despite the presence of saddle points. The geometric approach we develop here may also shed light on other problems arising from nonconvex recovery of structured signals.

0 citations0 reviewsNo code linkedOpen access
preprint2014arXiv

Efficient Point-to-Subspace Query in $\ell^1$ with Application to Robust Object Instance Recognition

Motivated by vision tasks such as robust face and object recognition, we consider the following general problem: given a collection of low-dimensional linear subspaces in a high-dimensional ambient (image) space, and a query point (image), efficiently determine the nearest subspace to the query in $\ell^1$ distance. In contrast to the naive exhaustive search which entails large-scale linear programs, we show that the computational burden can be cut down significantly by a simple two-stage algorithm: (1) projecting the query and data-base subspaces into lower-dimensional space by random Cauchy matrix, and solving small-scale distance evaluations (linear programs) in the projection space to locate candidate nearest; (2) with few candidates upon independent repetition of (1), getting back to the high-dimensional space and performing exhaustive search. To preserve the identity of the nearest subspace with nontrivial probability, the projection dimension typically is low-order polynomial of the subspace dimension multiplied by logarithm of number of the subspaces (Theorem 2.1). The reduced dimensionality and hence complexity renders the proposed algorithm particularly relevant to vision application such as robust face and object instance recognition that we investigate empirically.

0 citations0 reviewsNo code linkedOpen access
preprint2012arXiv

Efficient Point-to-Subspace Query in $\ell^1$: Theory and Applications in Computer Vision

Motivated by vision tasks such as robust face and object recognition, we consider the following general problem: given a collection of low-dimensional linear subspaces in a high-dimensional ambient (image) space and a query point (image), efficiently determine the nearest subspace to the query in $\ell^1$ distance. We show in theory that Cauchy random embedding of the objects into significantly-lower-dimensional spaces helps preserve the identity of the nearest subspace with constant probability. This offers the possibility of efficiently selecting several candidates for accurate search. We sketch preliminary experiments on robust face and digit recognition to corroborate our theory.

0 citations0 reviewsNo code linkedOpen access
preprint2012arXiv

Robust Recovery of Subspace Structures by Low-Rank Representation

In this work we address the subspace recovery problem. Given a set of data samples (vectors) approximately drawn from a union of multiple subspaces, our goal is to segment the samples into their respective subspaces and correct the possible errors as well. To this end, we propose a novel method termed Low-Rank Representation (LRR), which seeks the lowest-rank representation among all the candidates that can represent the data samples as linear combinations of the bases in a given dictionary. It is shown that LRR well solves the subspace recovery problem: when the data is clean, we prove that LRR exactly captures the true subspace structures; for the data contaminated by outliers, we prove that under certain conditions LRR can exactly recover the row space of the original data and detect the outlier as well; for the data corrupted by arbitrary errors, LRR can also approximately recover the row space with theoretical guarantees. Since the subspace membership is provably determined by the row space, these further imply that LRR can perform robust subspace segmentation and error correction, in an efficient way.

0 citations0 reviewsNo code linkedOpen access
preprint2010arXiv

Closed-Form Solutions to A Category of Nuclear Norm Minimization Problems

It is an efficient and effective strategy to utilize the nuclear norm approximation to learn low-rank matrices, which arise frequently in machine learning and computer vision. So the exploration of nuclear norm minimization problems is gaining much attention recently. In this paper we shall prove that the following Low-Rank Representation (LRR) \cite{icml_2010_lrr,lrr_extention} problem: {eqnarray*} \min_{Z} \norm{Z}_*, & {s.t.,} & X=AZ, {eqnarray*} has a unique and closed-form solution, where $X$ and $A$ are given matrices. The proof is based on proving a lemma that allows us to get closed-form solutions to a category of nuclear norm minimization problems.

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preprint2010arXiv

Robust Low-Rank Subspace Segmentation with Semidefinite Guarantees

Recently there is a line of research work proposing to employ Spectral Clustering (SC) to segment (group){Throughout the paper, we use segmentation, clustering, and grouping, and their verb forms, interchangeably.} high-dimensional structural data such as those (approximately) lying on subspaces {We follow {liu2010robust} and use the term "subspace" to denote both linear subspaces and affine subspaces. There is a trivial conversion between linear subspaces and affine subspaces as mentioned therein.} or low-dimensional manifolds. By learning the affinity matrix in the form of sparse reconstruction, techniques proposed in this vein often considerably boost the performance in subspace settings where traditional SC can fail. Despite the success, there are fundamental problems that have been left unsolved: the spectrum property of the learned affinity matrix cannot be gauged in advance, and there is often one ugly symmetrization step that post-processes the affinity for SC input. Hence we advocate to enforce the symmetric positive semidefinite constraint explicitly during learning (Low-Rank Representation with Positive SemiDefinite constraint, or LRR-PSD), and show that factually it can be solved in an exquisite scheme efficiently instead of general-purpose SDP solvers that usually scale up poorly. We provide rigorous mathematical derivations to show that, in its canonical form, LRR-PSD is equivalent to the recently proposed Low-Rank Representation (LRR) scheme {liu2010robust}, and hence offer theoretic and practical insights to both LRR-PSD and LRR, inviting future research. As per the computational cost, our proposal is at most comparable to that of LRR, if not less. We validate our theoretic analysis and optimization scheme by experiments on both synthetic and real data sets.

0 citations0 reviewsNo code linkedOpen access
preprint2010arXiv

Selective Image Super-Resolution

In this paper we propose a vision system that performs image Super Resolution (SR) with selectivity. Conventional SR techniques, either by multi-image fusion or example-based construction, have failed to capitalize on the intrinsic structural and semantic context in the image, and performed "blind" resolution recovery to the entire image area. By comparison, we advocate example-based selective SR whereby selectivity is exemplified in three aspects: region selectivity (SR only at object regions), source selectivity (object SR with trained object dictionaries), and refinement selectivity (object boundaries refinement using matting). The proposed system takes over-segmented low-resolution images as inputs, assimilates recent learning techniques of sparse coding (SC) and grouped multi-task lasso (GMTL), and leads eventually to a framework for joint figure-ground separation and interest object SR. The efficiency of our framework is manifested in our experiments with subsets of the VOC2009 and MSRC datasets. We also demonstrate several interesting vision applications that can build on our system.

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