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Researcher profile

Jan Dirk Wegner

Jan Dirk Wegner contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Computer Visioneess.IVMachine Learning

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Published work

8 published item(s)

preprint2026arXiv

deadtrees.earth-aerial: A Multi-Resolution Aerial Image Dataset for Tree Cover and Mortality Detection

Forests worldwide are increasingly threatened by climate change and disturbances such as fire, pests, and pathogens, creating an urgent need for scalable monitoring of tree cover and tree mortality. Aerial imagery from drones and aircraft is a key data source for detailed and large-scale mapping of tree crowns and mortality. However, related progress is limited by the lack of globally representative, harmonized datasets for joint segmentation of tree cover and mortality. We introduce two novel, open, machine-learning-ready datasets to enable joint segmentation of tree cover and tree mortality from centimeter-scale aerial imagery for the first time at global scales. With DTE-aerial-train, we provide a training dataset comprising 385K image patches of size 1024x1024 pixels, with resolutions ranging from 2.5 to 20 cm. It includes multi-class expert-annotated and -audited pseudo-labels for tree cover and mortality. With DTE-aerial-bench, we provide a geographically balanced benchmark test set of 25 globally distributed orthoimages totaling 525 patches with high-quality expert annotations for both tree cover and mortality. Both the training and benchmark datasets span tropical, temperate, boreal, and dryland biomes and cover a wide range of forest structures and mortality patterns. Using the benchmark test set for evaluation, we establish strong reference baselines that improve mortality segmentation across all biomes and scales with significant gains in challenging regions, such as boreal forests, where the F1 score increases from 0.40 to 0.58 with around 45% relative improvement. All data, models, and code will be publicly released under permissive open-source licenses. An interactive visualization of the benchmark dataset is available at deadtrees.earth/releases/dte-aerial-bench.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

A Deep Learning Approach for Digital Color Reconstruction of Lenticular Films

We propose the first accurate digitization and color reconstruction process for historical lenticular film that is robust to artifacts. Lenticular films emerged in the 1920s and were one of the first technologies that permitted to capture full color information in motion. The technology leverages an RGB filter and cylindrical lenticules embossed on the film surface to encode the color in the horizontal spatial dimension of the image. To project the pictures the encoding process was reversed using an appropriate analog device. In this work, we introduce an automated, fully digital pipeline to process the scan of lenticular films and colorize the image. Our method merges deep learning with a model-based approach in order to maximize the performance while making sure that the reconstructed colored images truthfully match the encoded color information. Our model employs different strategies to achieve an effective color reconstruction, in particular (i) we use data augmentation to create a robust lenticule segmentation network, (ii) we fit the lenticules raster prediction to obtain a precise vectorial lenticule localization, and (iii) we train a colorization network that predicts interpolation coefficients in order to obtain a truthful colorization. We validate the proposed method on a lenticular film dataset and compare it to other approaches. Since no colored groundtruth is available as reference, we conduct a user study to validate our method in a subjective manner. The results of the study show that the proposed method is largely preferred with respect to other existing and baseline methods.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

A high-resolution canopy height model of the Earth

The worldwide variation in vegetation height is fundamental to the global carbon cycle and central to the functioning of ecosystems and their biodiversity. Geospatially explicit and, ideally, highly resolved information is required to manage terrestrial ecosystems, mitigate climate change, and prevent biodiversity loss. Here, we present the first global, wall-to-wall canopy height map at 10 m ground sampling distance for the year 2020. No single data source meets these requirements: dedicated space missions like GEDI deliver sparse height data, with unprecedented coverage, whereas optical satellite images like Sentinel-2 offer dense observations globally, but cannot directly measure vertical structures. By fusing GEDI with Sentinel-2, we have developed a probabilistic deep learning model to retrieve canopy height from Sentinel-2 images anywhere on Earth, and to quantify the uncertainty in these estimates. The presented approach reduces the saturation effect commonly encountered when estimating canopy height from satellite images, allowing to resolve tall canopies with likely high carbon stocks. According to our map, only 5% of the global landmass is covered by trees taller than 30 m. Such data play an important role for conservation, e.g., we find that only 34% of these tall canopies are located within protected areas. Our model enables consistent, uncertainty-informed worldwide mapping and supports an ongoing monitoring to detect change and inform decision making. The approach can serve ongoing efforts in forest conservation, and has the potential to foster advances in climate, carbon, and biodiversity modelling.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Gating Revisited: Deep Multi-layer RNNs That Can Be Trained

We propose a new STAckable Recurrent cell (STAR) for recurrent neural networks (RNNs), which has fewer parameters than widely used LSTM and GRU while being more robust against vanishing or exploding gradients. Stacking recurrent units into deep architectures suffers from two major limitations: (i) many recurrent cells (e.g., LSTMs) are costly in terms of parameters and computation resources; and (ii) deep RNNs are prone to vanishing or exploding gradients during training. We investigate the training of multi-layer RNNs and examine the magnitude of the gradients as they propagate through the network in the "vertical" direction. We show that, depending on the structure of the basic recurrent unit, the gradients are systematically attenuated or amplified. Based on our analysis we design a new type of gated cell that better preserves gradient magnitude. We validate our design on a large number of sequence modelling tasks and demonstrate that the proposed STAR cell allows to build and train deeper recurrent architectures, ultimately leading to improved performance while being computationally more efficient.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

PC2WF: 3D Wireframe Reconstruction from Raw Point Clouds

We introduce PC2WF, the first end-to-end trainable deep network architecture to convert a 3D point cloud into a wireframe model. The network takes as input an unordered set of 3D points sampled from the surface of some object, and outputs a wireframe of that object, i.e., a sparse set of corner points linked by line segments. Recovering the wireframe is a challenging task, where the numbers of both vertices and edges are different for every instance, and a-priori unknown. Our architecture gradually builds up the model: It starts by encoding the points into feature vectors. Based on those features, it identifies a pool of candidate vertices, then prunes those candidates to a final set of corner vertices and refines their locations. Next, the corners are linked with an exhaustive set of candidate edges, which is again pruned to obtain the final wireframe. All steps are trainable, and errors can be backpropagated through the entire sequence. We validate the proposed model on a publicly available synthetic dataset, for which the ground truth wireframes are accessible, as well as on a new real-world dataset. Our model produces wireframe abstractions of good quality and outperforms several baselines.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Deep Active Learning in Remote Sensing for data efficient Change Detection

We investigate active learning in the context of deep neural network models for change detection and map updating. Active learning is a natural choice for a number of remote sensing tasks, including the detection of local surface changes: changes are on the one hand rare and on the other hand their appearance is varied and diffuse, making it hard to collect a representative training set in advance. In the active learning setting, one starts from a minimal set of training examples and progressively chooses informative samples that are annotated by a user and added to the training set. Hence, a core component of an active learning system is a mechanism to estimate model uncertainty, which is then used to pick uncertain, informative samples. We study different mechanisms to capture and quantify this uncertainty when working with deep networks, based on the variance or entropy across explicit or implicit model ensembles. We show that active learning successfully finds highly informative samples and automatically balances the training distribution, and reaches the same performance as a model supervised with a large, pre-annotated training set, with $\approx$99% fewer annotated samples.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Geocoding of trees from street addresses and street-level images

We introduce an approach for updating older tree inventories with geographic coordinates using street-level panorama images and a global optimization framework for tree instance matching. Geolocations of trees in inventories until the early 2000s where recorded using street addresses whereas newer inventories use GPS. Our method retrofits older inventories with geographic coordinates to allow connecting them with newer inventories to facilitate long-term studies on tree mortality etc. What makes this problem challenging is the different number of trees per street address, the heterogeneous appearance of different tree instances in the images, ambiguous tree positions if viewed from multiple images and occlusions. To solve this assignment problem, we (i) detect trees in Google street-view panoramas using deep learning, (ii) combine multi-view detections per tree into a single representation, (iii) and match detected trees with given trees per street address with a global optimization approach. Experiments for > 50000 trees in 5 cities in California, USA, show that we are able to assign geographic coordinates to 38 % of the street trees, which is a good starting point for long-term studies on the ecosystem services value of street trees at large scale.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

HistoNet: Predicting size histograms of object instances

We propose to predict histograms of object sizes in crowded scenes directly without any explicit object instance segmentation. What makes this task challenging is the high density of objects (of the same category), which makes instance identification hard. Instead of explicitly segmenting object instances, we show that directly learning histograms of object sizes improves accuracy while using drastically less parameters. This is very useful for application scenarios where explicit, pixel-accurate instance segmentation is not needed, but there lies interest in the overall distribution of instance sizes. Our core applications are in biology, where we estimate the size distribution of soldier fly larvae, and medicine, where we estimate the size distribution of cancer cells as an intermediate step to calculate the tumor cellularity score. Given an image with hundreds of small object instances, we output the total count and the size histogram. We also provide a new data set for this task, the FlyLarvae data set, which consists of 11,000 larvae instances labeled pixel-wise. Our method results in an overall improvement in the count and size distribution prediction as compared to state-of-the-art instance segmentation method Mask R-CNN.

0 citations0 reviewsNo code linkedOpen access