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Researcher profile

George Atia

George Atia contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningArtificial IntelligenceBiomoleculeseess.SPeess.SYFormal Languages and Automata TheorySystems and Control

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Published work

5 published item(s)

preprint2026arXiv

LANTERN: LLM-Augmented Neurosymbolic Transfer with Experience-Gated Reasoning Networks

Transfer learning in reinforcement learning (RL) seeks to accelerate learning in new tasks by leveraging knowledge from related sources. Existing neurosymbolic transfer methods, however, typically rely on manually specified task automata, assume a single source task, and use fixed knowledge-integration mechanisms that cannot adapt to varying source relevance. We propose LANTERN, a unified framework for multi-source neurosymbolic transfer that addresses these limitations through three components: (i) deterministic finite automata generated from natural language task descriptions using large language models, (ii) semantic embedding-based aggregation of multiple source policies weighted by cross-task similarity, and (iii) adaptive teacher-student gating based on temporal-difference error and semantic uncertainty. Across domains spanning resource management, navigation, and control, LANTERN achieves 40-60% improvements in sample efficiency over existing baselines while remaining robust to poorly aligned sources. These results demonstrate that multi-source, adaptively weighted neurosymbolic transfer can improve scalability and robustness in symbolic RL settings.

0 citations0 reviewsNo code linkedOpen access
preprint2023arXiv

On the Robustness of AlphaFold: A COVID-19 Case Study

Protein folding neural networks (PFNNs) such as AlphaFold predict remarkably accurate structures of proteins compared to other approaches. However, the robustness of such networks has heretofore not been explored. This is particularly relevant given the broad social implications of such technologies and the fact that biologically small perturbations in the protein sequence do not generally lead to drastic changes in the protein structure. In this paper, we demonstrate that AlphaFold does not exhibit such robustness despite its high accuracy. This raises the challenge of detecting and quantifying the extent to which these predicted protein structures can be trusted. To measure the robustness of the predicted structures, we utilize (i) the root-mean-square deviation (RMSD) and (ii) the Global Distance Test (GDT) similarity measure between the predicted structure of the original sequence and the structure of its adversarially perturbed version. We prove that the problem of minimally perturbing protein sequences to fool protein folding neural networks is NP-complete. Based on the well-established BLOSUM62 sequence alignment scoring matrix, we generate adversarial protein sequences and show that the RMSD between the predicted protein structure and the structure of the original sequence are very large when the adversarial changes are bounded by (i) 20 units in the BLOSUM62 distance, and (ii) five residues (out of hundreds or thousands of residues) in the given protein sequence. In our experimental evaluation, we consider 111 COVID-19 proteins in the Universal Protein resource (UniProt), a central resource for protein data managed by the European Bioinformatics Institute, Swiss Institute of Bioinformatics, and the US Protein Information Resource. These result in an overall GDT similarity test score average of around 34%, demonstrating a substantial drop in the performance of AlphaFold.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Controller Synthesis for Omega-Regular and Steady-State Specifications

Given a Markov decision process (MDP) and a linear-time ($ω$-regular or LTL) specification, the controller synthesis problem aims to compute the optimal policy that satisfies the specification. More recently, problems that reason over the asymptotic behavior of systems have been proposed through the lens of steady-state planning. This entails finding a control policy for an MDP such that the Markov chain induced by the solution policy satisfies a given set of constraints on its steady-state distribution. This paper studies a generalization of the controller synthesis problem for a linear-time specification under steady-state constraints on the asymptotic behavior. We present an algorithm to find a deterministic policy satisfying $ω$-regular and steady-state constraints by characterizing the solutions as an integer linear program, and experimentally evaluate our approach.

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preprint2022arXiv

Inferring Probabilistic Reward Machines from Non-Markovian Reward Processes for Reinforcement Learning

The success of reinforcement learning in typical settings is predicated on Markovian assumptions on the reward signal by which an agent learns optimal policies. In recent years, the use of reward machines has relaxed this assumption by enabling a structured representation of non-Markovian rewards. In particular, such representations can be used to augment the state space of the underlying decision process, thereby facilitating non-Markovian reinforcement learning. However, these reward machines cannot capture the semantics of stochastic reward signals. In this paper, we make progress on this front by introducing probabilistic reward machines (PRMs) as a representation of non-Markovian stochastic rewards. We present an algorithm to learn PRMs from the underlying decision process and prove results around its correctness and convergence.

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preprint2020arXiv

A Multi-criteria Approach for Fast and Outlier-aware Representative Selection from Manifolds

The problem of representative selection amounts to sampling few informative exemplars from large datasets. This paper presents MOSAIC, a novel representative selection approach from high-dimensional data that may exhibit non-linear structures. Resting upon a novel quadratic formulation, Our method advances a multi-criteria selection approach that maximizes the global representation power of the sampled subset, ensures diversity, and rejects disruptive information by effectively detecting outliers. Through theoretical analyses we characterize the obtained sketch and reveal that the sampled representatives maximize a well-defined notion of data coverage in a transformed space. In addition, we present a highly scalable randomized implementation of the proposed algorithm shown to bring about substantial speedups. MOSAIC's superiority in achieving the desired characteristics of a representative subset all at once while exhibiting remarkable robustness to various outlier types is demonstrated via extensive experiments conducted on both real and synthetic data with comparisons to state-of-the-art algorithms.

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