Researcher profile

Geoffrey Fox

Geoffrey Fox contributes to research discovery and scholarly infrastructure.

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Published work

9 published item(s)

preprint2026arXiv

Diagnosing Training Inference Mismatch in LLM Reinforcement Learning

Modern LLM RL systems separate rollout generation from policy optimization. These two stages are expected to produce token probabilities that match exactly. However, implementation differences can make them assign different values to the same sequence under the same model weights, inducing Training-Inference Mismatch (TIM). TIM is difficult to inspect because it is entangled with off-policy drift and common stabilization mechanisms. In this work, we isolate TIM in a zero-mismatch diagnostic setting (VeXact), and show that small token-level numerical disagreements can independently cause training collapse. We further show that TIM changes the effective optimization problem, and identify a set of remedies that could mitigate TIM. Our results suggest that TIM is not benign numerical noise, but a systems-level perturbation that should be treated as a first-order factor in analyzing LLM RL stability.

preprint2023arXiv

Report on 2023 CyberTraining PI Meeting, 26-27 September 2023

This document describes a two-day meeting held for the Principal Investigators (PIs) of NSF CyberTraining grants. The report covers invited talks, panels, and six breakout sessions. The meeting involved over 80 PIs and NSF program managers (PMs). The lessons recorded in detail in the report are a wealth of information that could help current and future PIs, as well as NSF PMs, understand the future directions suggested by the PI community. The meeting was held simultaneously with that of the PIs of the NSF Cyberinfrastructure for Sustained Scientific Innovation (CSSI) program. This co-location led to two joint sessions: one with NSF speakers and the other on broader impact. Further, the joint poster and refreshment sessions benefited from the interactions between CSSI and CyberTraining PIs.

preprint2023arXiv

Supercharging Distributed Computing Environments For High Performance Data Engineering

The data engineering and data science community has embraced the idea of using Python & R dataframes for regular applications. Driven by the big data revolution and artificial intelligence, these applications are now essential in order to process terabytes of data. They can easily exceed the capabilities of a single machine, but also demand significant developer time & effort. Therefore it is essential to design scalable dataframe solutions. There have been multiple attempts to tackle this problem, the most notable being the dataframe systems developed using distributed computing environments such as Dask and Ray. Even though Dask/Ray distributed computing features look very promising, we perceive that the Dask Dataframes/Ray Datasets still have room for optimization. In this paper, we present CylonFlow, an alternative distributed dataframe execution methodology that enables state-of-the-art performance and scalability on the same Dask/Ray infrastructure (thereby supercharging them!). To achieve this, we integrate a high performance dataframe system Cylon, which was originally based on an entirely different execution paradigm, into Dask and Ray. Our experiments show that on a pipeline of dataframe operators, CylonFlow achieves 30x more distributed performance than Dask Dataframes. Interestingly, it also enables superior sequential performance due to the native C++ execution of Cylon. We believe the success of Cylon & CylonFlow extends beyond the data engineering domain, and can be used to consolidate high performance computing and distributed computing ecosystems.

preprint2022arXiv

Does the Catalog of California Earthquakes, with Aftershocks Included, Contain Information about Future Large Earthquakes?

Yes. Interval statistics have been used to conclude that major earthquakes are random events in time and cannot be anticipated or predicted. Machine learning is a powerful new technique that enhances our ability to understand the information content of earthquake catalogs. We show that catalogs contain significant information on current hazard and future predictability for large earthquakes.

preprint2022arXiv

GTrans: Spatiotemporal Autoregressive Transformer with Graph Embeddings for Nowcasting Extreme Events

Spatiotemporal time series nowcasting should preserve temporal and spatial dynamics in the sense that generated new sequences from models respect the covariance relationship from history. Conventional feature extractors are built with deep convolutional neural networks (CNN). However, CNN models have limits to image-like applications where data can be formed with high-dimensional arrays. In contrast, applications in social networks, road traffic, physics, and chemical property prediction where data features can be organized with nodes and edges of graphs. Transformer architecture is an emerging method for predictive models, bringing high accuracy and efficiency due to attention mechanism design. This paper proposes a spatiotemporal model, namely GTrans, that transforms data features into graph embeddings and predicts temporal dynamics with a transformer model. According to our experiments, we demonstrate that GTrans can model spatial and temporal dynamics and nowcasts extreme events for datasets. Furthermore, in all the experiments, GTrans can achieve the highest F1 and F2 scores in binary-class prediction tests than the baseline models.

preprint2022arXiv

Hybrid Cloud and HPC Approach to High-Performance Dataframes

Data pre-processing is a fundamental component in any data-driven application. With the increasing complexity of data processing operations and volume of data, Cylon, a distributed dataframe system, is developed to facilitate data processing both as a standalone application and as a library, especially for Python applications. While Cylon shows promising performance results, we experienced difficulties trying to integrate with frameworks incompatible with the traditional Message Passing Interface (MPI). While MPI implementations encompass scalable and efficient communication routines, their process launching mechanisms work well with mainstream HPC systems but are incompatible with some environments that adopt their own resource management systems. In this work, we alleviated this issue by directly integrating the Unified Communication X (UCX) framework, which supports a variety of classic HPC and non-HPC process-bootstrapping mechanisms as our communication framework. While we experimented with our methodology on Cylon, the same technique can be used to bring MPI communication to other applications that do not employ MPI's built-in process management approach.

preprint2021arXiv

Deep learning approaches to surrogates for solving the diffusion equation for mechanistic real-world simulations

In many mechanistic medical, biological, physical and engineered spatiotemporal dynamic models the numerical solution of partial differential equations (PDEs) can make simulations impractically slow. Biological models require the simultaneous calculation of the spatial variation of concentration of dozens of diffusing chemical species. Machine learning surrogates, neural networks trained to provide approximate solutions to such complicated numerical problems, can often provide speed-ups of several orders of magnitude compared to direct calculation. PDE surrogates enable use of larger models than are possible with direct calculation and can make including such simulations in real-time or near-real time workflows practical. Creating a surrogate requires running the direct calculation tens of thousands of times to generate training data and then training the neural network, both of which are computationally expensive. We use a Convolutional Neural Network to approximate the stationary solution to the diffusion equation in the case of two equal-diameter, circular, constant-value sources located at random positions in a two-dimensional square domain with absorbing boundary conditions. To improve convergence during training, we apply a training approach that uses roll-back to reject stochastic changes to the network that increase the loss function. The trained neural network approximation is about 1e3 times faster than the direct calculation for individual replicas. Because different applications will have different criteria for acceptable approximation accuracy, we discuss a variety of loss functions and accuracy estimators that can help select the best network for a particular application.

preprint2021arXiv

Earthquake Nowcasting with Deep Learning

We review previous approaches to nowcasting earthquakes and introduce new approaches based on deep learning using three distinct models based on recurrent neural networks and transformers. We discuss different choices for observables and measures presenting promising initial results for a region of Southern California from 1950-2020. Earthquake activity is predicted as a function of 0.1-degree spatial bins for time periods varying from two weeks to four years. The overall quality is measured by the Nash Sutcliffe Efficiency comparing the deviation of nowcast and observation with the variance over time in each spatial region. The software is available as open-source together with the preprocessed data from the USGS.

preprint2020arXiv

High Performance Data Engineering Everywhere

The amazing advances being made in the fields of machine and deep learning are a highlight of the Big Data era for both enterprise and research communities. Modern applications require resources beyond a single node's ability to provide. However this is just a small part of the issues facing the overall data processing environment, which must also support a raft of data engineering for pre- and post-data processing, communication, and system integration. An important requirement of data analytics tools is to be able to easily integrate with existing frameworks in a multitude of languages, thereby increasing user productivity and efficiency. All this demands an efficient and highly distributed integrated approach for data processing, yet many of today's popular data analytics tools are unable to satisfy all these requirements at the same time. In this paper we present Cylon, an open-source high performance distributed data processing library that can be seamlessly integrated with existing Big Data and AI/ML frameworks. It is developed with a flexible C++ core on top of a compact data structure and exposes language bindings to C++, Java, and Python. We discuss Cylon's architecture in detail, and reveal how it can be imported as a library to existing applications or operate as a standalone framework. Initial experiments show that Cylon enhances popular tools such as Apache Spark and Dask with major performance improvements for key operations and better component linkages. Finally, we show how its design enables Cylon to be used cross-platform with minimum overhead, which includes popular AI tools such as PyTorch, Tensorflow, and Jupyter notebooks.