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Da Zhou

Da Zhou contributes to research discovery and scholarly infrastructure.

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Trust 21 - Emerging
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Published work

12 published item(s)

preprint2026arXiv

PRCD-MAP: Learning How Much to Trust Imperfect Priors in Causal Discovery

External priors of unknown reliability create a brittle trade-off in causal discovery: blind trust amplifies errors, blind rejection wastes signal. Real priors are also heterogeneously reliable -- physical laws are trustworthy, LLM-suggested edges are speculative -- yet existing methods either ignore priors or impose them through globally uniform trust. We propose PRCD-MAP, a soft prior-consumption layer that assigns per-edge trust to an imperfect prior and uses it to modulate a prior-aware $\ell_1$ and prior-weighted $\ell_2$ regularizer in a MAP objective. Trust is calibrated by empirical Bayes on a Laplace-approximated marginal likelihood and propagated along the prior graph by an MLP, so data-confirmed neighborhoods boost trust and contradictions suppress it. PRCD-MAP enjoys a population-level safety guarantee: it is $\varepsilon$-safe in expectation over the prior-generation distribution, with $\varepsilon\leq C\cdot\mathrm{acc}(1{-}\mathrm{acc})\cdot d^2/T$ at the parametric $T^{-1}$ rate and vanishing at the prior-quality endpoints. When the prior is uninformative, learned trust provably collapses to its floor and the method recovers a no-prior baseline. Empirically, on real CausalTime data PRCD-MAP exploits informative LLM priors (LLM-prior gain $+0.067/+0.089$ AUROC on AQI/Medical over a no-prior PRCD-MAP backbone; combined backbone+prior lead $+0.123/+0.043$ over PCMCI+), auto-attenuates on the anonymous-variable Traffic stress test, and retains a lead at $d{=}300$; against BayesDAG, the closest soft-Bayesian baseline, PRCD-MAP wins on every CausalTime dataset under a matched $W_0$-only protocol. A four-way ablation isolates each component: EB calibration and MLP trust propagation jointly carry the plurality of the gain, with positive sign on every dataset. Extensions to nonlinear (NAM) and cross-sectional settings show the calibrated-trust principle is setting-agnostic.

preprint2016arXiv

Control of epidemics via social partnership adjustment

Epidemic control is of great importance for human society. Adjusting interacting partners is an effective individualized control strategy. Intuitively, it is done either by shortening the interaction time between susceptible and infected individuals or by increasing the opportunities for contact between susceptible individuals. Here, we provide a comparative study on these two control strategies by establishing an epidemic model with non-uniform stochastic interactions. It seems that the two strategies should be similar, since shortening the interaction time between susceptible and infected individuals somehow increases the chances for contact between susceptible individuals. However, analytical results indicate that the effectiveness of the former strategy sensitively depends on the infectious intensity and the combinations of different interaction rates, whereas the latter one is quite robust and efficient. Simulations are shown in comparison with our analytical predictions. Our work may shed light on the strategic choice of disease control.

preprint2015arXiv

A Note on Discrete Einstein Metric

In this short note, we prove that the space of all admissible piecewise linear metrics parameterized by length square on a triangulated manifolds is a convex cone. We further study Regge's Einstein-Hilbert action and give a much more reasonable definition of discrete Einstein metric than our former version in \cite{G}. Finally, we introduce a discrete Ricci flow for three dimensional triangulated manifolds, which is closely related to the existence of discrete Einstein metrics.

preprint2015arXiv

Phase structures of the black D$p$-D$(p + 4)$-brane system in various ensembles II: electrical and thermodynamic stability

By incorporating the electrical stability condition into the discussion, we continue the study on the thermodynamic phase structures of the D$p$-D$(p + 4)$ black brane in GG, GC, CG, CC ensembles defined in our previous paper arXiv:1502.00261. We find that including the electrical stability conditions in addition to the thermal stability conditions does not modify the phase structure of the GG ensemble but puts more constraints on the parameter space where black branes can stably exist in GC, CG, CC ensembles. In particular, the van der Waals-like phase structure which was supposed to be present in these ensembles when only thermal stability condition is considered would no longer be visible, since the phase of the small black brane is unstable under electrical fluctuations. However, the symmetry of the phase structure by interchanging the two kinds of brane charges and potentials is still preserved, which is argued to be the result of T-duality.

preprint2015arXiv

Phase structures of the black D$p$-D$(p+4)$-brane system in various ensembles I: thermal stability

When the D$(p+4)$-brane ($p=0,1,2$) with delocalized D$p$ charges is put into equilibrium with a spherical thermal cavity, the two kinds of charges can be put into canonical or grand canonical ensemble independently by setting different conditions at the boundary. Using the thermal stability condition, we discuss the phase structures of various ensembles of this system formed in this way and find out the situations that the black brane could be the final stable phase in these ensembles. In particular, van der Waals-like phase transitions can happen when D0 and D4 charges are in different kinds of ensembles. Furthermore, our results indicate that the D$(p+4)$-branes and the delocalized D$p$-branes are equipotent.

preprint2015arXiv

Seiberg Duality, Quiver Gauge Theories, and Ihara Zeta Function

We study Ihara zeta function for graphs in the context of quivers arising from gauge theories, especially under Seiberg duality transformations. The distribution of poles is studied as we proceed along the duality tree, in light of the weak and strong graph versions of the Riemann Hypothesis. As a by-product, we find a refined version of Ihara zeta function to be the generating function for the generic superpotential of the gauge theory.

preprint2015arXiv

The overshoot and phenotypic equilibrium in characterizing cancer dynamics of reversible phenotypic plasticity

The paradigm of phenotypic plasticity indicates reversible relations of different cancer cell phenotypes, which extends the cellular hierarchy proposed by the classical cancer stem cell (CSC) theory. Since it is still question able if the phenotypic plasticity is a crucial improvement to the hierarchical model or just a minor extension to it, it is worthwhile to explore the dynamic behavior characterizing the reversible phenotypic plasticity. In this study we compare the hierarchical model and the reversible model in predicting the cell-state dynamics observed in biological experiments. Our results show that the hierarchical model shows significant disadvantages over the reversible model in describing both long-term stability (phenotypic equilibrium) and short-term transient dynamics (overshoot) of cancer cells. In a very specific case in which the total growth of population due to each cell type is identical, the hierarchical model predicts neither phenotypic equilibrium nor overshoot, whereas thereversible model succeeds in predicting both of them. Even though the performance of the hierarchical model can be improved by relaxing the specific assumption, its prediction to the phenotypic equilibrium strongly depends on a precondition that may be unrealistic in biological experiments, and it also fails to capture the overshoot of CSCs. By comparison, it is more likely for the reversible model to correctly describe the stability of the phenotypic mixture and various types of overshoot behavior.

preprint2015arXiv

The phenotypic equilibrium of cancer cells: From average-level stability to path-wise convergence

The phenotypic equilibrium, i.e. heterogeneous population of cancer cells tending to a fixed equilibrium of phenotypic proportions, has received much attention in cancer biology very recently. In previous literature, some theoretical models were used to predict the experimental phenomena of the phenotypic equilibrium, which were often explained by different concepts of stabilities of the models. Here we present a stochastic multi-phenotype branching model by integrating conventional cellular hierarchy with phenotypic plasticity mechanisms of cancer cells. Based on our model, it is shown that: (i) our model can serve as a framework to unify the previous models for the phenotypic equilibrium, and then harmonizes the different kinds of average-level stabilities proposed in these models; and (ii) path-wise convergence of our model provides a deeper understanding to the phenotypic equilibrium from stochastic point of view. That is, the emergence of the phenotypic equilibrium is rooted in the stochastic nature of (almost) every sample path, the average-level stability just follows from it by averaging stochastic samples.

preprint2014arXiv

A multi-phenotypic cancer model with cell plasticity

The conventional cancer stem cell (CSC) theory indicates a hierarchy of CSCs and non-stem cancer cells (NSCCs), that is, CSCs can differentiate into NSCCs but not vice versa. However, an alternative paradigm of CSC theory with reversible cell plasticity among cancer cells has received much attention very recently. Here we present a generalized multi-phenotypic cancer model by integrating cell plasticity with the conventional hierarchical structure of cancer cells. We prove that under very weak assumption, the nonlinear dynamics of multi-phenotypic proportions in our model has only one stable steady state and no stable limit cycle. This result theoretically explains the phenotypic equilibrium phenomena reported in various cancer cell lines. Furthermore, according to the transient analysis of our model, it is found that cancer cell plasticity plays an essential role in maintaining the phenotypic diversity in cancer especially during the transient dynamics. Two biological examples with experimental data show that the phenotypic conversions from NCSSs to CSCs greatly contribute to the transient growth of CSCs proportion shortly after the drastic reduction of it. In particular, an interesting overshooting phenomenon of CSCs proportion arises in three-phenotypic example. Our work may pave the way for modeling and analyzing the multi-phenotypic cell population dynamics with cell plasticity.

preprint2014arXiv

The Statistics of Vacuum Geometry

We investigate the vacuum moduli space of supersymmetric gauge theories en masse by probing the space of such vacua from a statistical standpoint. Using quiver gauge theories with ${\cal N}=1$ supersymmetry as a testing ground, we sample over a large number of vacua as algebraic varieties, computing explicitly their dimension, degree and Hilbert series. We study the distribution of these geometrical quantities, and also address the question of how likely it is for the moduli space to be Calabi-Yau.

preprint2013arXiv

Sakai-Sugimoto model in D0-D4 background

We add smeared D0 charges to the D4 background and discuss Sakai-Sugimoto model under this background. The corresponding gauge theory develops a glue condensate $< tr (F_{μν}\tilde F^{μν})> $. The D8 branes go less deep than in the original S-S model and massless Goldstones are still found in the spectrum. The effects of the condensate on the meson spectra, pion decay constant, and couplings of the vector mesons and Goldstones are then investigated.

preprint2011arXiv

Fixation, transient landscape and diffusion&#39;s dilemma in stochastic evolutionary game dynamics

Agent-based stochastic models for finite populations have recently received much attention in the game theory of evolutionary dynamics. Both the ultimate fixation and the pre-fixation transient behavior are important to a full understanding of the dynamics. In this paper, we study the transient dynamics of the well-mixed Moran process through constructing a landscape function. It is shown that the landscape playing a central theoretical &#34;device&#34; that integrates several lines of inquiries: the stable behavior of the replicator dynamics, the long-time fixation, and continuous diffusion approximation associated with asymptotically large population. Several issues relating to the transient dynamics are discussed: (i) multiple time scales phenomenon associated with intra- and inter-attractoral dynamics; (ii) discontinuous transition in stochastically stationary process akin to Maxwell construction in equilibrium statistical physics; and (iii) the dilemma diffusion approximation facing as a continuous approximation of the discrete evolutionary dynamics. It is found that rare events with exponentially small probabilities, corresponding to the uphill movements and barrier crossing in the landscape with multiple wells that are made possible by strong nonlinear dynamics, plays an important role in understanding the origin of the complexity in evolutionary, nonlinear biological systems.