Researcher profile

Chengjin Xu

Chengjin Xu contributes to research discovery and scholarly infrastructure.

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Published work

7 published item(s)

preprint2026arXiv

Continual Pretraining on Encrypted Synthetic Data for Privacy-Preserving LLMs

Preserving privacy in sensitive data while pretraining large language models on small, domain-specific corpora presents a significant challenge. In this work, we take an exploratory step toward privacy-preserving continual pretraining by proposing an entity-based framework that synthesizes encrypted training data to protect personally identifiable information (PII). Our approach constructs a weighted entity graph to guide data synthesis and applies deterministic encryption to PII entities, enabling LLMs to encode new knowledge through continual pretraining while granting authorized access to sensitive data through decryption keys. Our results on limited-scale datasets demonstrate that our pretrained models outperform base models and ensure PII security, while exhibiting a modest performance gap compared to models trained on unencrypted synthetic data. We further show that increasing the number of entities and leveraging graph-based synthesis improves model performance, and that encrypted models retain instruction-following capabilities with long retrieved contexts. We discuss the security implications and limitations of deterministic encryption, positioning this work as an initial investigation into the design space of encrypted data pretraining for privacy-preserving LLMs. Our code is available at https://github.com/DataArcTech/SoE.

preprint2026arXiv

DataArc-SynData-Toolkit: A Unified Closed-Loop Framework for Multi-Path, Multimodal, and Multilingual Data Synthesis

Synthetic data has emerged as a crucial solution to the data scarcity bottleneck in large language models (LLMs), particularly for specialized domains and low-resource languages. However, the broader adoption of existing synthetic data tools is severely hindered by convoluted workflows, fragmented data standards, and limited scalability across modalities. To address these limitations, we develop DataArc-SynData-Toolkit, an open-source framework featuring: (1) a configuration-driven, end-to-end pipeline equipped with an intuitive visual interface and simplified CLI for exceptional usability; (2) a unified, quality-controllable synthesis paradigm that standardizes multi-source data generation to ensure high reusability; and (3) a highly modular architecture designed for seamless multimodal, multilingual, and multi-task adaptation. We apply the toolkit in multiple application scenarios. Experimental results demonstrate that our toolkit achieves an optimal balance between generation efficiency and data quality. By offering an end-to-end and visually interactive pipeline, DataArc-SynData-Toolkit significantly lowers the technical barrier to synthetic data generation and subsequent model training, accelerating its practical deployment in real-world applications.

preprint2026arXiv

JudgeAgent: Beyond Static Benchmarks for Knowledge-Driven and Dynamic LLM Evaluation

Current evaluation methods for large language models (LLMs) primarily rely on static benchmarks, presenting two major challenges: limited knowledge coverage and fixed difficulties that mismatch with the evaluated LLMs. These limitations lead to superficial assessments of LLM knowledge, thereby impeding the targeted model optimizations. To bridge this gap, we propose JudgeAgent, a knowledge-driven and dynamic evaluation framework for LLMs. To address the challenge of limited knowledge coverage, JudgeAgent leverages LLM agents equipped with context graphs to traverse knowledge structures systematically for question generation. Furthermore, to mitigate data contamination and difficulty mismatch, it adopts a difficulty-adaptive and multi-turn interview mechanism. Thereby, JudgeAgent can achieve comprehensive evaluations and facilitate more effective improvement of LLMs. Empirical results demonstrate that JudgeAgent enables more comprehensive evaluations and facilitates effective model iterations, highlighting the potential of this knowledge-driven and dynamic evaluation paradigm. The source code is available on https://github.com/DataArcTech/JudgeAgent.

preprint2026arXiv

Think-on-Graph 3.0: Efficient and Adaptive LLM Reasoning on Heterogeneous Graphs via Multi-Agent Dual-Evolving Context Retrieval

Graph-based Retrieval-Augmented Generation (GraphRAG) has become the important paradigm for enhancing Large Language Models (LLMs) with external knowledge. However, existing approaches are constrained by their reliance on high-quality knowledge graphs: manually built ones are not scalable, while automatically extracted ones are limited by the performance of LLM extractors, especially when using smaller, local-deployed models. To address this, we introduce Think-on-Graph 3.0 (ToG-3), a novel framework featuring a Multi-Agent Context Evolution and Retrieval (MACER) mechanism. Its core contribution is the dynamic construction and iterative refinement of a Chunk-Triplets-Community heterogeneous graph index, powered by a Dual-Evolution process that adaptively evolves both the query and the retrieved sub-graph during reasoning. ToG-3 dynamically builds a targeted graph index tailored to the query, enabling precise evidence retrieval and reasoning even with lightweight LLMs. Extensive experiments demonstrate that ToG-3 outperforms compared baselines on both deep and broad reasoning benchmarks, and ablation studies confirm the efficacy of the components of MACER framework. The source code are available in https://github.com/DataArcTech/ToG-3.

preprint2022arXiv

Geometric Algebra based Embeddings for Static and Temporal Knowledge Graph Completion

Recent years, Knowledge Graph Embeddings (KGEs) have shown promising performance on link prediction tasks by mapping the entities and relations from a Knowledge Graph (KG) into a geometric space and thus have gained increasing attentions. In addition, many recent Knowledge Graphs involve evolving data, e.g., the fact (\textit{Obama}, \textit{PresidentOf}, \textit{USA}) is valid only from 2009 to 2017. This introduces important challenges for knowledge representation learning since such temporal KGs change over time. In this work, we strive to move beyond the complex or hypercomplex space for KGE and propose a novel geometric algebra based embedding approach, GeomE, which uses multivector representations and the geometric product to model entities and relations. GeomE subsumes several state-of-the-art KGE models and is able to model diverse relations patterns. On top of this, we extend GeomE to TGeomE for temporal KGE, which performs 4th-order tensor factorization of a temporal KG and devises a new linear temporal regularization for time representation learning. Moreover, we study the effect of time granularity on the performance of TGeomE models. Experimental results show that our proposed models achieve the state-of-the-art performances on link prediction over four commonly-used static KG datasets and four well-established temporal KG datasets across various metrics.

preprint2022arXiv

Time-aware Graph Neural Networks for Entity Alignment between Temporal Knowledge Graphs

Entity alignment aims to identify equivalent entity pairs between different knowledge graphs (KGs). Recently, the availability of temporal KGs (TKGs) that contain time information created the need for reasoning over time in such TKGs. Existing embedding-based entity alignment approaches disregard time information that commonly exists in many large-scale KGs, leaving much room for improvement. In this paper, we focus on the task of aligning entity pairs between TKGs and propose a novel Time-aware Entity Alignment approach based on Graph Neural Networks (TEA-GNN). We embed entities, relations and timestamps of different KGs into a vector space and use GNNs to learn entity representations. To incorporate both relation and time information into the GNN structure of our model, we use a time-aware attention mechanism which assigns different weights to different nodes with orthogonal transformation matrices computed from embeddings of the relevant relations and timestamps in a neighborhood. Experimental results on multiple real-world TKG datasets show that our method significantly outperforms the state-of-the-art methods due to the inclusion of time information.

preprint2022arXiv

Ultrahyperbolic Knowledge Graph Embeddings

Recent knowledge graph (KG) embeddings have been advanced by hyperbolic geometry due to its superior capability for representing hierarchies. The topological structures of real-world KGs, however, are rather heterogeneous, i.e., a KG is composed of multiple distinct hierarchies and non-hierarchical graph structures. Therefore, a homogeneous (either Euclidean or hyperbolic) geometry is not sufficient for fairly representing such heterogeneous structures. To capture the topological heterogeneity of KGs, we present an ultrahyperbolic KG embedding (UltraE) in an ultrahyperbolic (or pseudo-Riemannian) manifold that seamlessly interleaves hyperbolic and spherical manifolds. In particular, we model each relation as a pseudo-orthogonal transformation that preserves the pseudo-Riemannian bilinear form. The pseudo-orthogonal transformation is decomposed into various operators (i.e., circular rotations, reflections and hyperbolic rotations), allowing for simultaneously modeling heterogeneous structures as well as complex relational patterns. Experimental results on three standard KGs show that UltraE outperforms previous Euclidean- and hyperbolic-based approaches.