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Researcher profile

Beng Chin Ooi

Beng Chin Ooi contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningDatabasesArtificial IntelligenceDistributed, Parallel, and Cluster ComputingPerformanceComputer VisionCryptography and SecurityApplicationseess.IVeess.SPInformation Retrieval

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Published work

15 published item(s)

preprint2026arXiv

FAVOR: Efficient Filter-Agnostic Vector ANNS Based on Selectivity-Aware Exclusion Distances

Modern retrieval systems increasingly require integrating approximate nearest neighbor search (ANNS) with complex attribute filtering to handle hybrid queries in applications such as recommendation systems and retrieval-augmented generation (RAG). While HNSW-based inline-filtering methods show promise, existing approaches struggle to deliver high throughput under low-selectivity scenarios while balancing search efficiency, filtering generality, and index connectivity. To address these challenges, we propose FAVOR, an efficient filter-agnostic vector ANNS that supports arbitrary filtering conditions while maintaining stable performance across varying selectivity levels. FAVOR introduces three novel features: (1) an integrated architecture that unifies selectivity estimation and filtered ANNS execution, providing a cohesive solution for hybrid vector-attribute queries; (2) a HNSW-based inline-filtering algorithm that introduces an exclusion distance mechanism to dynamically reshape the vector distance distribution, pushing non-target vectors away from the query while promoting valid candidates toward the query, thus improving search efficiency without compromising generality or graph connectivity; and (3) a selectivity-driven search selector that estimates query selectivity and dynamically routes queries between a pre-filtering brute-force algorithm for low-selectivity cases and an optimized HNSW-based search algorithm for other scenarios, ensuring consistent performance. Extensive experiments on real-world datasets demonstrate that FAVOR achieves a 1.3-5$\times$ higher QPS at $Recall@10 = 95\%$ compared to state-of-the-art methods for arbitrary filtering conditions, while maintaining competitive performance even against tailored solutions in some filtering conditions.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Blockchain Goes Green? Part II: Characterizing the Performance and Cost of Blockchains on the Cloud and at the Edge

While state-of-the-art permissioned blockchains can achieve thousands of transactions per second on commodity hardware with x86/64 architecture, their performance when running on different architectures is not clear. The goal of this work is to characterize the performance and cost of permissioned blockchains on different hardware systems, which is important as diverse application domains are adopting t. To this end, we conduct extensive cost and performance evaluation of two permissioned blockchains, namely Hyperledger Fabric and ConsenSys Quorum, on five different types of hardware covering both x86/64 and ARM architecture, as well as, both cloud and edge computing. The hardware nodes include servers with Intel Xeon CPU, servers with ARM-based Amazon Graviton CPU, and edge devices with ARM-based CPU. Our results reveal a diverse profile of the two blockchains across different settings, demonstrating the impact of hardware choices on the overall performance and cost. We find that Graviton servers outperform Xeon servers in many settings, due to their powerful CPU and high memory bandwidth. Edge devices with ARM architecture, on the other hand, exhibit low performance. When comparing the cloud with the edge, we show that the cost of the latter is much smaller in the long run if manpower cost is not considered.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

BoostMIS: Boosting Medical Image Semi-supervised Learning with Adaptive Pseudo Labeling and Informative Active Annotation

In this paper, we propose a novel semi-supervised learning (SSL) framework named BoostMIS that combines adaptive pseudo labeling and informative active annotation to unleash the potential of medical image SSL models: (1) BoostMIS can adaptively leverage the cluster assumption and consistency regularization of the unlabeled data according to the current learning status. This strategy can adaptively generate one-hot "hard" labels converted from task model predictions for better task model training. (2) For the unselected unlabeled images with low confidence, we introduce an Active learning (AL) algorithm to find the informative samples as the annotation candidates by exploiting virtual adversarial perturbation and model's density-aware entropy. These informative candidates are subsequently fed into the next training cycle for better SSL label propagation. Notably, the adaptive pseudo-labeling and informative active annotation form a learning closed-loop that are mutually collaborative to boost medical image SSL. To verify the effectiveness of the proposed method, we collected a metastatic epidural spinal cord compression (MESCC) dataset that aims to optimize MESCC diagnosis and classification for improved specialist referral and treatment. We conducted an extensive experimental study of BoostMIS on MESCC and another public dataset COVIDx. The experimental results verify our framework's effectiveness and generalisability for different medical image datasets with a significant improvement over various state-of-the-art methods.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

NASI: Label- and Data-agnostic Neural Architecture Search at Initialization

Recent years have witnessed a surging interest in Neural Architecture Search (NAS). Various algorithms have been proposed to improve the search efficiency and effectiveness of NAS, i.e., to reduce the search cost and improve the generalization performance of the selected architectures, respectively. However, the search efficiency of these algorithms is severely limited by the need for model training during the search process. To overcome this limitation, we propose a novel NAS algorithm called NAS at Initialization (NASI) that exploits the capability of a Neural Tangent Kernel in being able to characterize the converged performance of candidate architectures at initialization, hence allowing model training to be completely avoided to boost the search efficiency. Besides the improved search efficiency, NASI also achieves competitive search effectiveness on various datasets like CIFAR-10/100 and ImageNet. Further, NASI is shown to be label- and data-agnostic under mild conditions, which guarantees the transferability of architectures selected by our NASI over different datasets.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Serverless Data Science -- Are We There Yet? A Case Study of Model Serving

Machine learning (ML) is an important part of modern data science applications. Data scientists today have to manage the end-to-end ML life cycle that includes both model training and model serving, the latter of which is essential, as it makes their works available to end-users. Systems of model serving require high performance, low cost, and ease of management. Cloud providers are already offering model serving choices, including managed services and self-rented servers. Recently, serverless computing, whose advantages include high elasticity and a fine-grained cost model, brings another option for model serving. Our goal in this paper is to examine the viability of serverless as a mainstream model serving platform. To this end, we first conduct a comprehensive evaluation of the performance and cost of serverless against other model serving systems on Amazon Web Service and Google Cloud Platform. We find that serverless outperforms many cloud-based alternatives. Further, there are settings under which it even achieves better performance than GPU-based systems. Next, we present the design space of serverless model serving, which comprises multiple dimensions, including cloud platforms, serving runtimes, and other function-specific parameters. For each dimension, we analyze the impact of different choices and provide suggestions for data scientists to better utilize serverless model serving. Finally, we discuss challenges and opportunities in building a more practical serverless model serving system.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A Fusion-Denoising Attack on InstaHide with Data Augmentation

InstaHide is a state-of-the-art mechanism for protecting private training images, by mixing multiple private images and modifying them such that their visual features are indistinguishable to the naked eye. In recent work, however, Carlini et al. show that it is possible to reconstruct private images from the encrypted dataset generated by InstaHide. Nevertheless, we demonstrate that Carlini et al.'s attack can be easily defeated by incorporating data augmentation into InstaHide. This leads to a natural question: is InstaHide with data augmentation secure? In this paper, we provide a negative answer to this question, by devising an attack for recovering private images from the outputs of InstaHide even when data augmentation is present. The basic idea is to use a comparative network to identify encrypted images that are likely to correspond to the same private image, and then employ a fusion-denoising network for restoring the private image from the encrypted ones, taking into account the effects of data augmentation. Extensive experiments demonstrate the effectiveness of the proposed attack in comparison to Carlini et al.'s attack.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Blockchains vs. Distributed Databases: Dichotomy and Fusion

Blockchain has come a long way: a system that was initially proposed specifically for cryptocurrencies is now being adapted and adopted as a general-purpose transactional system. As blockchain evolves into another data management system, the natural question is how it compares against distributed database systems. Existing works on this comparison focus on high-level properties, such as security and throughput. They stop short of showing how the underlying design choices contribute to the overall differences. Our work fills this important gap and provides a principled framework for analyzing the emerging trend of blockchain-database fusion. We perform a twin study of blockchains and distributed database systems as two types of transactional systems. We propose a taxonomy that illustrates the dichotomy across four dimensions, namely replication, concurrency, storage, and sharding. Within each dimension, we discuss how the design choices are driven by two goals: security for blockchains, and performance for distributed databases. To expose the impact of different design choices on the overall performance, we conduct an in-depth performance analysis of two blockchains, namely Quorum and Hyperledger Fabric, and two distributed databases, namely TiDB, and etcd. Lastly, we propose a framework for back-of-the-envelope performance forecast of blockchain-database hybrids.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Feature Inference Attack on Model Predictions in Vertical Federated Learning

Federated learning (FL) is an emerging paradigm for facilitating multiple organizations' data collaboration without revealing their private data to each other. Recently, vertical FL, where the participating organizations hold the same set of samples but with disjoint features and only one organization owns the labels, has received increased attention. This paper presents several feature inference attack methods to investigate the potential privacy leakages in the model prediction stage of vertical FL. The attack methods consider the most stringent setting that the adversary controls only the trained vertical FL model and the model predictions, relying on no background information. We first propose two specific attacks on the logistic regression (LR) and decision tree (DT) models, according to individual prediction output. We further design a general attack method based on multiple prediction outputs accumulated by the adversary to handle complex models, such as neural networks (NN) and random forest (RF) models. Experimental evaluations demonstrate the effectiveness of the proposed attacks and highlight the need for designing private mechanisms to protect the prediction outputs in vertical FL.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

A Transactional Perspective on Execute-order-validate Blockchains

Smart contracts have enabled blockchain systems to evolve from simple cryptocurrency platforms, such as Bitcoin, to general transactional systems, such as Ethereum. Catering for emerging business requirements, a new architecture called execute-order-validate has been proposed in Hyperledger Fabric to support parallel transactions and improve the blockchain's throughput. However, this new architecture might render many invalid transactions when serializing them. This problem is further exaggerated as the block formation rate is inherently limited due to other factors beside data processing, such as cryptography and consensus. In this work, we propose a novel method to enhance the execute-order-validate architecture, by reducing invalid transactions to improve the throughput of blockchains. Our method is inspired by state-of-the-art optimistic concurrency control techniques in modern database systems. In contrast to existing blockchains that adopt database's preventive approaches which might abort serializable transactions, our method is theoretically more fine-grained. Specifically, unserializable transactions are aborted before ordering and the remaining transactions are guaranteed to be serializable. For evaluation, we implement our method in two blockchains respectively, FabricSharp on top of Hyperledger Fabric, and FastFabricSharp on top of FastFabric. We compare the performance of FabricSharp with vanilla Fabric and three related systems, two of which are respectively implemented with one standard and one state-of-the-art concurrency control techniques from databases. The results demonstrate that FabricSharp achieves 25% higher throughput compared to the other systems in nearly all experimental scenarios. Moreover, the FastFabricSharp's improvement over FastFabric is up to 66%.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Analysis of Indexing Structures for Immutable Data

In emerging applications such as blockchains and collaborative data analytics, there are strong demands for data immutability, multi-version accesses, and tamper-evident controls. This leads to three new index structures for immutable data, namely Merkle Patricia Trie (MPT), Merkle Bucket Tree (MBT), and Pattern-Oriented-Split Tree (POS-Tree). Although these structures have been adopted in real applications, there is no systematic evaluation of their pros and cons in the literature. This makes it difficult for practitioners to choose the right index structure for their applications, as there is only a limited understanding of the characteristics of each index. To alleviate the above deficiency, we present a comprehensive analysis of the existing index structures for immutable data, evaluating both their asymptotic and empirical performance. Specifically, we show that MPT, MBT, and POS-Tree are all instances of a recently proposed framework, dubbed \my{Structurally Invariant and Reusable Indexes (SIRI)}. We propose to evaluate the SIRI instances based on five essential metrics: their efficiency for four index operations (i.e., lookup, update, comparison, and merge), as well as their \my{deduplication ratios} (i.e., the size of the index with deduplication over the size without deduplication). We establish the worst-case guarantees of each index in terms of these five metrics, and we experimentally evaluate all indexes in a large variety of settings. Based on our theoretical and empirical analysis, we conclude that POS-Tree is a favorable choice for indexing immutable data.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Database Meets Deep Learning: Challenges and Opportunities

Deep learning has recently become very popular on account of its incredible success in many complex data-driven applications, such as image classification and speech recognition. The database community has worked on data-driven applications for many years, and therefore should be playing a lead role in supporting this new wave. However, databases and deep learning are different in terms of both techniques and applications. In this paper, we discuss research problems at the intersection of the two fields. In particular, we discuss possible improvements for deep learning systems from a database perspective, and analyze database applications that may benefit from deep learning techniques.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Effective and Efficient Dropout for Deep Convolutional Neural Networks

Convolutional Neural networks (CNNs) based applications have become ubiquitous, where proper regularization is greatly needed. To prevent large neural network models from overfitting, dropout has been widely used as an efficient regularization technique in practice. However, many recent works show that the standard dropout is ineffective or even detrimental to the training of CNNs. In this paper, we revisit this issue and examine various dropout variants in an attempt to improve existing dropout-based regularization techniques for CNNs. We attribute the failure of standard dropout to the conflict between the stochasticity of dropout and its following Batch Normalization (BN), and propose to reduce the conflict by placing dropout operations right before the convolutional operation instead of BN, or totally address this issue by replacing BN with Group Normalization (GN). We further introduce a structurally more suited dropout variant Drop-Conv2d, which provides more efficient and effective regularization for deep CNNs. These dropout variants can be readily integrated into the building blocks of CNNs and implemented in existing deep learning platforms. Extensive experiments on benchmark datasets including CIFAR, SVHN and ImageNet are conducted to compare the existing building blocks and the proposed ones with dropout training. Results show that our building blocks improve over state-of-the-art CNNs significantly, which is mainly due to the better regularization and implicit model ensemble effect.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

ForkBase: Immutable, Tamper-evident Storage Substrate for Branchable Applications

Data collaboration activities typically require systematic or protocol-based coordination to be scalable. Git, an effective enabler for collaborative coding, has been attested for its success in countless projects around the world. Hence, applying the Git philosophy to general data collaboration beyond coding is motivating. We call it Git for data. However, the original Git design handles data at the file granule, which is considered too coarse-grained for many database applications. We argue that Git for data should be co-designed with database systems. To this end, we developed ForkBase to make Git for data practical. ForkBase is a distributed, immutable storage system designed for data version management and data collaborative operation. In this demonstration, we show how ForkBase can greatly facilitate collaborative data management and how its novel data deduplication technique can improve storage efficiency for archiving massive data versions.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Privacy Preserving Vertical Federated Learning for Tree-based Models

Federated learning (FL) is an emerging paradigm that enables multiple organizations to jointly train a model without revealing their private data to each other. This paper studies {\it vertical} federated learning, which tackles the scenarios where (i) collaborating organizations own data of the same set of users but with disjoint features, and (ii) only one organization holds the labels. We propose Pivot, a novel solution for privacy preserving vertical decision tree training and prediction, ensuring that no intermediate information is disclosed other than those the clients have agreed to release (i.e., the final tree model and the prediction output). Pivot does not rely on any trusted third party and provides protection against a semi-honest adversary that may compromise $m-1$ out of $m$ clients. We further identify two privacy leakages when the trained decision tree model is released in plaintext and propose an enhanced protocol to mitigate them. The proposed solution can also be extended to tree ensemble models, e.g., random forest (RF) and gradient boosting decision tree (GBDT) by treating single decision trees as building blocks. Theoretical and experimental analysis suggest that Pivot is efficient for the privacy achieved.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

TRACER: A Framework for Facilitating Accurate and Interpretable Analytics for High Stakes Applications

In high stakes applications such as healthcare and finance analytics, the interpretability of predictive models is required and necessary for domain practitioners to trust the predictions. Traditional machine learning models, e.g., logistic regression (LR), are easy to interpret in nature. However, many of these models aggregate time-series data without considering the temporal correlations and variations. Therefore, their performance cannot match up to recurrent neural network (RNN) based models, which are nonetheless difficult to interpret. In this paper, we propose a general framework TRACER to facilitate accurate and interpretable predictions, with a novel model TITV devised for healthcare analytics and other high stakes applications such as financial investment and risk management. Different from LR and other existing RNN-based models, TITV is designed to capture both the time-invariant and the time-variant feature importance using a feature-wise transformation subnetwork and a self-attention subnetwork, for the feature influence shared over the entire time series and the time-related importance respectively. Healthcare analytics is adopted as a driving use case, and we note that the proposed TRACER is also applicable to other domains, e.g., fintech. We evaluate the accuracy of TRACER extensively in two real-world hospital datasets, and our doctors/clinicians further validate the interpretability of TRACER in both the patient level and the feature level. Besides, TRACER is also validated in a high stakes financial application and a critical temperature forecasting application. The experimental results confirm that TRACER facilitates both accurate and interpretable analytics for high stakes applications.

0 citations0 reviewsNo code linkedOpen access