Paper detail

Ternary graph isomorphism in polynomial time, after Luks

The graph isomorphism problem has a long history in mathematics and computer science, with applications in computational chemistry and biology, and it is believed to be neither solvable in polynomial time nor NP-complete. E. Luks proposed in 1982 the best algorithm so far for the solution of this problem, which moreover runs in polynomial time if an upper bound for the degrees of the nodes in the graphs is taken as a constant. Unfortunately, Luks' algorithm is purely theoretical, very difficult to use in practice, and, in particular, we have not been able to find any implementation of it in the literature. The main goal of this paper is to present an efficient implementation of this algorithm for ternary graphs in the SAGE system, as well as an adaptation to fully resolved rooted phylogenetic networks on a given set of taxa.