Non-linear interaction in random matrix models of RNA

preprint2011arXivOpen access

Abstract

A non-linear Penner type interaction is introduced and studied in the random matrix model of homo-RNA. The asymptotics in length of the partition function is discussed for small and large NN (size of matrix). The interaction doubles the coupling (vv) between the bases and the dependence of the combinatoric factor on (v,Nv,N) is found. For small NN, the effect of interaction changes the power law exponents for the secondary and tertiary structures. The specific heat shows different analytical behavior in the two regions of NN, with a peculiar double peak in its second derivative for N=1 at low temperature. Tapping the model indicates the presence of multiple solutions.

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