Driven polymer translocation through a cylindrical nanochannel: Interplay between the channel length and the chain length

preprint2012arXivOpen access

Abstract

Using analytical techniques and Langevin dynamics simulations, we investigate the dynamics of polymer translocation through a nanochannel embedded in two dimensions under an applied external field. We examine the translocation time for various ratio of the channel length LL to the polymer length NN. For short channels L≪NL\ll N, the translocation time τ∼N1+ντ\sim N^{1+ν} under weak driving force FF, while τ∼F−1Lτ\sim F^{-1}L for long channels L≫NL\gg N, independent of the chain length NN. Moreover, we observe a minimum of translocation time as a function of L/NL/N for different driving forces and channel widths. These results are interpreted by the waiting time of a single segment.

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