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Control Function Assisted IPW Estimation with a Secondary Outcome in Case-Control Studies

Case-control studies are designed towards studying associations between risk factors and a single, primary outcome. Information about additional, secondary outcomes is also collected, but association studies targeting such secondary outcomes should account for the case-control sampling scheme, or otherwise results may be biased. Often, one uses inverse probability weighted (IPW) estimators to estimate population effects in such studies. However, these estimators are inefficient relative to estimators that make additional assumptions about the data generating mechanism. We propose a class of estimators for the effect of risk factors on a secondary outcome in case-control studies, when the mean is modeled using either the identity or the log link. The proposed estimator combines IPW with a mean zero control function that depends explicitly on a model for the primary disease outcome. The efficient estimator in our class of estimators reduces to standard IPW when the model for the primary disease outcome is unrestricted, and is more efficient than standard IPW when the model is either parametric or semiparametric.