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Paper detail

Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology

The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed documents into RDF triples and links them to other LOD bubbles, such as Bio2RDF, LODD and DBPedia. The portal is based on D2R server and provides a SPARQL endpoint, but adds on few unique features like RDF faceted browser, user-friendly SPARQL query generator, MEDLINE/PubMed cross validation service, and Cytoscape visualization plugin. Three use cases demonstrate the functionality and usability of this portal.

preprint2010arXivOpen access
Bin ChenDavid J WildQian ZhuYing DingXiao DongMadhuvanthi SankaranarayananHuijun WangYuyin Sun
Information RetrievalOther Quantitative Biology
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Open access8 authors2 topics
Imported metadata coverageMissing code, dataset, citation and institution fields are tracked without dominating the paper.Details
Citations: 0Reviews: 0Saves: 0Code: not linkedDataset: not linkedInstitutions: 0

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Bin ChenDavid J WildQian ZhuYing DingXiao DongMadhuvanthi SankaranarayananHuijun WangYuyin Sun

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