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preprint1998arXiv

Brownian motion in fluctuating periodic potentials

This work deals with the overdamped motion of a particle in a fluctuating one-dimensional periodic potential. If the potential has no inversion symmetry and its fluctuations are asymmetric and correlated in time, a net flow can be generated at finite temperatures. We present results for the stationary current for the case of a piecewise linear potential, especially for potentials being close to the case with inversion symmetry. The aim is to study the stationary current as a function of the potential. Depending on the form of the potential, the current changes sign once or even twice as a function of the correlation time of the potential fluctuations. To explain these current reversals, several mechanisms are proposed. Finally, we discuss to what extent the model is useful to understand the motion of biomolecular motors.

preprint1999arXiv

Lax Pair Formulation and Multi-soliton Solution of the Integrable Vector Nonlinear Schrodinger Equation

The integrable vector nonlinear Schrodinger (vector NLS) equation is investigated by using Zakharov-Shabat (ZS) scheme. We get a Lax pair formulation of the vector NLS model. Multi-soliton solution of the equation is also derived by using inverse scattering method of ZS scheme. We also find that there is an elastic and inelastic collision of the bright and dark multi-solitons of the system.

preprint1996arXiv

Fluid Models for Kinetic Effects on Coherent Nonlinear Alfven Waves. II. Numerical Solutions

The influence of various kinetic effects (e.g. Landau damping, diffusive and collisional dissipation, and finite Larmor radius terms) on the nonlinear evolution of finite amplitude Alfvenic wave trains in a finite-beta environment is systematically investigated using a novel, kinetic nonlinear Schrodinger (KNLS) equation. The dynamics of Alfven waves is sensitive to the sense of polarization as well as the angle of propagation with respect to the ambient magnetic field. Numerical solution for the case with Landau damping reveals the formation of dissipative structures, which are quasi-stationary, S-polarized directional (and rotational) discontinuities which self-organize from parallel propagating, linearly polarized waves. Parallel propagating circularly polarized packets evolve to a few circularly polarized Alfven harmonics on large scales. Stationary arc-polarized rotational discontinuities form from obliquely propagating waves. Collisional dissipation, even if weak, introduces enhanced wave damping when beta is very close to unity. Cyclotron motion effects on resonant particle interactions introduce cyclotron resonance into the nonlinear Alfven wave dynamics.

preprint2000arXiv

Dynamic Fitness Landscapes in Molecular Evolution

We study self-replicating molecules under externally varying conditions. Changing conditions such as temperature variations and/or alterations in the environment's resource composition lead to both non-constant replication and decay rates of the molecules. In general, therefore, molecular evolution takes place in a dynamic rather than a static fitness landscape. We incorporate dynamic replication and decay rates into the standard quasispecies theory of molecular evolution, and show that for periodic time-dependencies, a system of evolving molecules enters a limit cycle for t→∞t\to\infty. For fast periodic changes, we show that molecules adapt to the time-averaged fitness landscape, whereas for slow changes they track the variations in the landscape arbitrarily closely. We derive a general approximation method that allows us to calculate the attractor of time-periodic landscapes, and demonstrate using several examples that the results of the approximation and the limiting cases of very slow and very fast changes are in perfect agreement. We also discuss landscapes with arbitrary time dependencies, and show that very fast changes again lead to a system that adapts to the time-aver

preprint1997arXiv

A Simple Model of Evolution with Variable System Size

A simple model of biological extinction with variable system size is presented that exhibits a power-law distribution of extinction event sizes. The model is a generalization of a model recently introduced by Newman (Proc. R. Soc. Lond. B265, 1605 (1996). Both analytical and numerical analysis show that the exponent of the power-law distribution depends only marginally on the growth rate gg at which new species enter the system and is equal to the one of the original model in the limit g→∞g\to\infty. A critical growth rate gcg_c can be found below which the system dies out. Under these model assumptions stable ecosystems can only exist if the regrowth of species is sufficiently fast.

preprint1998arXiv

Discrimination of the Healthy and Sick Cardiac Autonomic Nervous System by a New Wavelet Analysis of Heartbeat Intervals

We demonstrate that it is possible to distinguish with a complete certainty between healthy subjects and patients with various dysfunctions of the cardiac nervous system by way of multiresolutional wavelet transform of RR intervals. We repeated the study of Thurner et al on different ensemble of subjects. We show that reconstructed series using a filter which discards wavelet coefficients related with higher scales enables one to classify individuals for which the method otherwise is inconclusive. We suggest a delimiting diagnostic value of the standard deviation of the filtered, reconstructed RR interval time series in the range of ∼0.035\sim 0.035 (for the above mentioned filter), below which individuals are at risk.

preprint1997arXiv

Dissipative Dynamics of Collisionless Nonlinear Alfven Wave Trains

The nonlinear dynamics of collisionless Alfven trains, including resonant particle effects is studied using the kinetic nonlinear Schroedinger (KNLS) equation model. Numerical solutions of the KNLS reveal the dynamics of Alfven waves to be sensitive to the sense of polarization as well as the angle of propagation with respect to the ambient magnetic field. The combined effects of both wave nonlinearity and Landau damping result in the evolutionary formation of stationaryOA S- and arc-polarized directional and rotational discontinuities. These waveforms are freqently observed in the interplanetary plasma.

preprint1994arXiv

Octonions and Binocular Mobilevision

This paper is devoted to an interaction of 2 objects: the 1st of them is octonions, the classical structure of pure mathematics, the 2nd one is Mobilevision, the recently developped technique of computer graphics. Namely, it is shown that the binocular Mobilevision maybe elaborated by use of the octonionic colour space - the 7-dimensional extension of the classical one, which includes a strange overcolour besides two triples of ordinary ones (blue,green, red for left and right eyes). Contents. I. Interpretational geometry, anomalous virtual realities, quantum projective field theory and Mobilevision:(1.1. Interpretational geometry; 1.2. Anomalous virtual realities; 1.3. Colours in anomalous virtual realities; 1.4. Quantum projective field theory; 1.5. Mobilevision). II. Quantum conformal and q_R-conformal field theories, an infinite dimensional quantum group and quantum field analogs of Euler-Arnold top:(2.1. Quantum conformal field theory; 2.2. Lobachevskii algebra, the quantization of the Lobachevskii plane; 2.3. Quantum q_R-conformal field theory; 2.4. An infinite dimensional quantum group; 2.5. Quantum-field Euler-Arnold top and Virasoro master equation). III. Octonionic colour

preprint1998arXiv

Equilibrium and dynamical properties of two dimensional self-gravitating systems

A system of N classical particles in a 2D periodic cell interacting via long-range attractive potential is studied. For low energy density UU a collapsed phase is identified, while in the high energy limit the particles are homogeneously distributed. A phase transition from the collapsed to the homogeneous state occurs at critical energy U_c. A theoretical analysis within the canonical ensemble identifies such a transition as first order. But microcanonical simulations reveal a negative specific heat regime near UcU_c. The dynamical behaviour of the system is affected by this transition : below U_c anomalous diffusion is observed, while for U > U_c the motion of the particles is almost ballistic. In the collapsed phase, finite NN-effects act like a noise source of variance O(1/N), that restores normal diffusion on a time scale diverging with N. As a consequence, the asymptotic diffusion coefficient will also diverge algebraically with N and superdiffusion will be observable at any time in the limit N \to \infty. A Lyapunov analysis reveals that for U > U_c the maximal exponent λdecreases proportionally to N^{-1/3} and vanishes in the mean-field limit. For sufficiently small energ

preprint1999arXiv

Self-organization of traffic jams in cities: effects of stochastic dynamics and signal periods

We propose a cellular automata model for vehicular traffic in cities by combining (and appropriately modifying) ideas borrowed from the Biham-Middleton-Levine (BML) model of city traffic and the Nagel-Schreckenberg (NS) model of highway traffic. We demonstrate a phase transition from the "free-flowing" dynamical phase to the completely "jammed" phase at a vehicle density which depends on the time periods of the synchronized signals and the separation between them. The intrinsic stochasticity of the dynamics, which triggers the onset of jamming, is similar to that in the NS model, while the phenomenon of complete jamming through self-organization as well as the final jammed configurations are similar to those in the BML model. Using our new model, we have made an investigation of the time-dependence of the average speeds of the cars in the "free-flowing" phase as well as the dependence of flux and jamming on the time period of the signals.

preprint1998arXiv

A Simple Model of Superconducting Vortex Avalanches

We introduce a simple lattice model of superconducting vortices driven by repulsive interactions through a random pinning potential. The model describes the behavior at the scale of the London length lambda or larger. It self-organizes to a critical state, characterized by a constant flux density gradient, where the activity takes place in terms of avalanches spanning all length scales up to the system size. We determine scaling relations as well as four universal critical exponents for avalanche moments and durations: tau = 1.63 +/- 0.02, D = 2.7 +/- 0.1, z = 1.5 +/- 0.1, and tau_t = 2.13 +/- 0.14, for the system driven at the boundary.

preprint1999arXiv

Mean-field theory for scale-free random networks

Random networks with complex topology are common in Nature, describing systems as diverse as the world wide web or social and business networks. Recently, it has been demonstrated that most large networks for which topological information is available display scale-free features. Here we study the scaling properties of the recently introduced scale-free model, that can account for the observed power-law distribution of the connectivities. We develop a mean-field method to predict the growth dynamics of the individual vertices, and use this to calculate analytically the connectivity distribution and the scaling exponents. The mean-field method can be used to address the properties of two variants of the scale-free model, that do not display power-law scaling.

preprint1995arXiv

Phase space geometry and slow dynamics

We describe a non-Arrhenius mechanism for slowing down of dynamics that is inherent to the high dimensionality of the phase space. We show that such a mechanism is at work both in a family of mean-field spin-glass models without any domain structure and in the case of ferromagnetic domain growth. The marginality of spin-glass dynamics, as well as the existence of a `quasi equilibrium regime' can be understood within this scenario. We discuss the question of ergodicity in an out-of equilibrium situation.

preprint1999arXiv

The diameter of the world wide web

Despite its increasing role in communication, the world wide web remains the least controlled medium: any individual or institution can create websites with unrestricted number of documents and links. While great efforts are made to map and characterize the Internet's infrastructure, little is known about the topology of the web. Here we take a first step to fill this gap: we use local connectivity measurements to construct a topological model of the world wide web, allowing us to explore and characterize its large scale properties.

preprint1999arXiv

Braided Rivers and Superconducting Vortex Avalanches

Magnetic vortices intermittently flow through preferred channels when they are forced in or out of a superconductor. We study this behavior using a cellular model, and find that the vortex flow can make braided rivers strikingly similar to aerial photographs of braided fluvial rivers, such as the Brahmaputra. By developing an analysis technique suitable for characterizing a self-affine (multi)fractal, the scaling properties of the braided vortex rivers in the model are compared with those of braided fluvial rivers. We suggest that avalanche dynamics leads to braiding in both cases.

preprint1998arXiv

Error threshold in finite populations

A simple analytical framework to study the molecular quasispecies evolution of finite populations is proposed, in which the population is assumed to be a random combination of the constiyuent molecules in each generation,i.e., linkage disequilibrium at the population level is neglected. In particular, for the single-sharp-peak replication landscape we investigate the dependence of the error threshold on the population size and find that the replication accuracy at threshold increases linearly with the reciprocal of the population size for sufficiently large populations. Furthermore, in the deterministic limit our formulation yields the exact steady-state of the quasispecies model, indicating then the population composition is a random combination of the molecules.

preprint1996arXiv

Error threshold in the evolution of diploid organisms

The effects of error propagation in the reproduction of diploid organisms are studied within the populational genetics framework of the quasispecies model. The dependence of the error threshold on the dominance parameter is fully investigated. In particular, it is shown that dominance can protect the wild-type alleles from the error catastrophe. The analysis is restricted to a diploid analogue of the single-peaked landscape.

preprint1998arXiv

Competing Species Dynamics: Qualitative Advantage versus Geography

A simple cellular automata model for a two-group war over the same territory is presented. It is shown that a qualitative advantage is not enough for a minority to win. A spatial organization as well a definite degree of aggressiveness are instrumental to overcome a less fitted majority. The model applies to a large spectrum of competing groups: smoker-non smoker war, epidemic spreading, opinion formation, competition for industrial standards and species evolution. In the last case, it provides a new explanation for punctuated equilibria.

preprint1997arXiv

Limited Range Fractality of Randomly Adsorbed Rods

Multiple resolution analysis of two dimensional structures composed of randomly adsorbed penetrable rods, for densities below the percolation threshold, has been carried out using box-counting functions. It is found that at relevant resolutions, for box-sizes, rr, between cutoffs given by the average rod length <ℓ><\ell> and the average inter-rod distance r1r_1, these systems exhibit apparent fractal behavior. It is shown that unlike the case of randomly distributed isotropic objects, the upper cutoff r1r_1 is not only a function of the coverage but also depends on the excluded volume, averaged over the orientational distribution. Moreover, the apparent fractal dimension also depends on the orientational distributions of the rods and decreases as it becomes more anisotropic. For box sizes smaller than <ℓ><\ell> the box counting function is determined by the internal structure of the rods, whether simple or itself fractal. Two examples are considered - one of regular rods of one dimensional structure and rods which are trimmed into a Cantor set structure which are fractals themselves. The models examined are relevant to adsorption of linear molecules and fibers, liquid crystals, stre

preprint1999arXiv

Cortical Potential Distributions and Cognitive Information Processing

The use of cortical field potentials rather than the details of spike trains as the basis for cognitive information processing is proposed. This results in a space of cognitive elements with natural metrics. Sets of spike trains may also be considered to be points in a multidimensional metric space. The closeness of sets of spike trains in such a space implies the closeness of points in the resulting function space of potential distributions.

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