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Zhaofei Yu

Zhaofei Yu contributes to research discovery and scholarly infrastructure.

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Computer Vision Machine Learning Neurons and Cognition Neural and Evolutionary Computing Artificial Intelligence Computation and Language

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preprint2026arXiv

Inner-Probe: Discovering Copyright-related Data Generation in LLM Architecture

Large Language Models (LLMs) utilize extensive knowledge databases and show powerful text generation ability. However, their reliance on high-quality copyrighted datasets raises concerns about copyright infringements in generated texts. Current research often employs prompt engineering or semantic classifiers to identify copyrighted content, but these approaches have two significant limitations: (1) Challenging to identify which specific subdataset (e.g., works from particular authors) influences an LLM's output. (2) Treating the entire training database as copyrighted, hence overlooking the inclusion of non-copyrighted training data. We propose Inner-Probe, a lightweight framework designed to evaluate the influence of copyrighted sub-datasets on LLM-generated texts. Unlike traditional methods relying solely on text, we discover that the results of multi-head attention (MHA) during LLM output generation provide more effective information. Thus, Inner-Probe performs sub-dataset contribution analysis using a lightweight LSTM based network trained on MHA results in a supervised manner. Harnessing such a prior, Inner-Probe enables non-copyrighted text detection through a concatenated global projector trained with unsupervised contrastive learning. Inner-Probe demonstrates 3x improved efficiency compared to semantic model training in sub-dataset contribution analysis on Books3, achieves 15.04% - 58.7% higher accuracy over baselines on the Pile, and delivers a 0.104 increase in AUC for non-copyrighted data filtering.

preprint2026arXiv

Spike Imaging Velocimetry: Dense Motion Estimation of Fluids Using Spike Cameras

Particle Image Velocimetry (PIV) is a widely adopted non-invasive imaging technique that tracks the motion of tracer particles across image sequences to capture the velocity distribution of fluid flows. It is commonly employed to analyze complex flow structures and validate numerical simulations. This study explores the untapped potential of spike cameras--ultra-high-speed, high-dynamic-range vision sensors--in high-speed fluid velocimetry. We propose a deep learning framework, Spike Imaging Velocimetry (SIV), tailored for high-resolution fluid motion estimation. To enhance the network's performance, we design three novel modules specifically adapted to the characteristics of fluid dynamics and spike streams: the Detail-Preserving Hierarchical Transform (DPHT), the Graph Encoder (GE), and the Multi-scale Velocity Refinement (MSVR). Furthermore, we introduce a spike-based PIV dataset, Particle Scenes with Spike and Displacement (PSSD), which contains labeled samples from three representative fluid-dynamics scenarios: steady turbulence, high-speed flow, and high-dynamic-range conditions. Our proposed method outperforms existing baselines across all these scenarios, demonstrating its effectiveness.

preprint2026arXiv

Uncertainty-Aware Token Importance Estimation in Spiking Transformers

Spiking transformers have shown strong potential for neuromorphic vision, yet their token processing across multiple spiking steps still introduces substantial redundancy and inference cost. Existing token reduction methods mainly rely on response based cues, such as activation magnitude, firing statistics, or feature similarity. Although effective, these criteria do not explicitly characterize token importance from the perspective of temporally evolving class evidence. In spiking transformers, token representations are progressively formed across multiple spiking steps rather than determined at a single instant, suggesting that token importance should be evaluated not only by instantaneous responses but also by temporal uncertainty patterns. Our key observation is that tokens exhibit heterogeneous uncertainty trajectories over time, and that their temporally aggregated uncertainty statistics provide an effective cue for distinguishing informative tokens from redundant ones. Motivated by this, we propose Uncert, a training free and plug and play token importance estimation framework for spiking transformers. Specifically, Uncert models token wise class evidence with a Dirichlet distribution and summarizes each token temporal uncertainty using its mean and fluctuation across spiking steps, yielding an uncertainty aware importance score for token reduction during inference. Experiments on both static and neuromorphic benchmarks show that Uncert achieves favorable accuracy and efficiency tradeoffs, with the most consistent gains observed under token pruning. Further analysis reveals a clear empirical connection between temporal uncertainty patterns and token contribution, offering new insights into token dynamics in spiking transformers.

preprint2025arXiv

SpiLiFormer: Enhancing Spiking Transformers with Lateral Inhibition

Spiking Neural Networks (SNNs) based on Transformers have garnered significant attention due to their superior performance and high energy efficiency. However, the spiking attention modules of most existing Transformer-based SNNs are adapted from those of analog Transformers, failing to fully address the issue of over-allocating attention to irrelevant contexts. To fix this fundamental yet overlooked issue, we propose a Lateral Inhibition-inspired Spiking Transformer (SpiLiFormer). It emulates the brain's lateral inhibition mechanism, guiding the model to enhance attention to relevant tokens while suppressing attention to irrelevant ones. Our model achieves state-of-the-art (SOTA) performance across multiple datasets, including CIFAR-10 (+0.45%), CIFAR-100 (+0.48%), CIFAR10-DVS (+2.70%), N-Caltech101 (+1.94%), and ImageNet-1K (+1.6%). Notably, on the ImageNet-1K dataset, SpiLiFormer (69.9M parameters, 4 time steps, 384 resolution) outperforms E-SpikeFormer (173.0M parameters, 8 time steps, 384 resolution), a SOTA spiking Transformer, by 0.46% using only 39% of the parameters and half the time steps. The code and model checkpoints are publicly available at https://github.com/KirinZheng/SpiLiFormer.

preprint2024arXiv

Deep Learning for Visual Neuroprosthesis

The visual pathway involves complex networks of cells and regions which contribute to the encoding and processing of visual information. While some aspects of visual perception are understood, there are still many unanswered questions regarding the exact mechanisms of visual encoding and the organization of visual information along the pathway. This chapter discusses the importance of visual perception and the challenges associated with understanding how visual information is encoded and represented in the brain. Furthermore, this chapter introduces the concept of neuroprostheses: devices designed to enhance or replace bodily functions, and highlights the importance of constructing computational models of the visual pathway in the implementation of such devices. A number of such models, employing the use of deep learning models, are outlined, and their value to understanding visual coding and natural vision is discussed.

preprint2024arXiv

Parallel Spiking Neurons with High Efficiency and Ability to Learn Long-term Dependencies

Vanilla spiking neurons in Spiking Neural Networks (SNNs) use charge-fire-reset neuronal dynamics, which can only be simulated serially and can hardly learn long-time dependencies. We find that when removing reset, the neuronal dynamics can be reformulated in a non-iterative form and parallelized. By rewriting neuronal dynamics without reset to a general formulation, we propose the Parallel Spiking Neuron (PSN), which generates hidden states that are independent of their predecessors, resulting in parallelizable neuronal dynamics and extremely high simulation speed. The weights of inputs in the PSN are fully connected, which maximizes the utilization of temporal information. To avoid the use of future inputs for step-by-step inference, the weights of the PSN can be masked, resulting in the masked PSN. By sharing weights across time-steps based on the masked PSN, the sliding PSN is proposed to handle sequences of varying lengths. We evaluate the PSN family on simulation speed and temporal/static data classification, and the results show the overwhelming advantage of the PSN family in efficiency and accuracy. To the best of our knowledge, this is the first study about parallelizing spiking neurons and can be a cornerstone for the spiking deep learning research. Our codes are available at \url{https://github.com/fangwei123456/Parallel-Spiking-Neuron}.

preprint2022arXiv

Deep Residual Learning in Spiking Neural Networks

Deep Spiking Neural Networks (SNNs) present optimization difficulties for gradient-based approaches due to discrete binary activation and complex spatial-temporal dynamics. Considering the huge success of ResNet in deep learning, it would be natural to train deep SNNs with residual learning. Previous Spiking ResNet mimics the standard residual block in ANNs and simply replaces ReLU activation layers with spiking neurons, which suffers the degradation problem and can hardly implement residual learning. In this paper, we propose the spike-element-wise (SEW) ResNet to realize residual learning in deep SNNs. We prove that the SEW ResNet can easily implement identity mapping and overcome the vanishing/exploding gradient problems of Spiking ResNet. We evaluate our SEW ResNet on ImageNet, DVS Gesture, and CIFAR10-DVS datasets, and show that SEW ResNet outperforms the state-of-the-art directly trained SNNs in both accuracy and time-steps. Moreover, SEW ResNet can achieve higher performance by simply adding more layers, providing a simple method to train deep SNNs. To our best knowledge, this is the first time that directly training deep SNNs with more than 100 layers becomes possible. Our codes are available at https://github.com/fangwei123456/Spike-Element-Wise-ResNet.

preprint2022arXiv

Optimized Potential Initialization for Low-latency Spiking Neural Networks

Spiking Neural Networks (SNNs) have been attached great importance due to the distinctive properties of low power consumption, biological plausibility, and adversarial robustness. The most effective way to train deep SNNs is through ANN-to-SNN conversion, which have yielded the best performance in deep network structure and large-scale datasets. However, there is a trade-off between accuracy and latency. In order to achieve high precision as original ANNs, a long simulation time is needed to match the firing rate of a spiking neuron with the activation value of an analog neuron, which impedes the practical application of SNN. In this paper, we aim to achieve high-performance converted SNNs with extremely low latency (fewer than 32 time-steps). We start by theoretically analyzing ANN-to-SNN conversion and show that scaling the thresholds does play a similar role as weight normalization. Instead of introducing constraints that facilitate ANN-to-SNN conversion at the cost of model capacity, we applied a more direct way by optimizing the initial membrane potential to reduce the conversion loss in each layer. Besides, we demonstrate that optimal initialization of membrane potentials can implement expected error-free ANN-to-SNN conversion. We evaluate our algorithm on the CIFAR-10, CIFAR-100 and ImageNet datasets and achieve state-of-the-art accuracy, using fewer time-steps. For example, we reach top-1 accuracy of 93.38\% on CIFAR-10 with 16 time-steps. Moreover, our method can be applied to other ANN-SNN conversion methodologies and remarkably promote performance when the time-steps is small.

preprint2022arXiv

Spatio-Temporal Recurrent Networks for Event-Based Optical Flow Estimation

Event camera has offered promising alternative for visual perception, especially in high speed and high dynamic range scenes. Recently, many deep learning methods have shown great success in providing promising solutions to many event-based problems, such as optical flow estimation. However, existing deep learning methods did not address the importance of temporal information well from the perspective of architecture design and cannot effectively extract spatio-temporal features. Another line of research that utilizes Spiking Neural Network suffers from training issues for deeper architecture.To address these points, a novel input representation is proposed that captures the events' temporal distribution for signal enhancement. Moreover, we introduce a spatio-temporal recurrent encoding-decoding neural network architecture for event-based optical flow estimation, which utilizes Convolutional Gated Recurrent Units to extract feature maps from a series of event images. Besides, our architecture allows some traditional frame-based core modules, such as correlation layer and iterative residual refine scheme, to be incorporated. The network is end-to-end trained with self-supervised learning on the Multi-Vehicle Stereo Event Camera dataset. We have shown that it outperforms all the existing state-of-the-art methods by a large margin. The code link is https://github.com/ruizhao26/STE-FlowNet.

preprint2020arXiv

Neural System Identification with Spike-triggered Non-negative Matrix Factorization

Neuronal circuits formed in the brain are complex with intricate connection patterns. Such complexity is also observed in the retina as a relatively simple neuronal circuit. A retinal ganglion cell receives excitatory inputs from neurons in previous layers as driving forces to fire spikes. Analytical methods are required that can decipher these components in a systematic manner. Recently a method termed spike-triggered non-negative matrix factorization (STNMF) has been proposed for this purpose. In this study, we extend the scope of the STNMF method. By using the retinal ganglion cell as a model system, we show that STNMF can detect various computational properties of upstream bipolar cells, including spatial receptive field, temporal filter, and transfer nonlinearity. In addition, we recover synaptic connection strengths from the weight matrix of STNMF. Furthermore, we show that STNMF can separate spikes of a ganglion cell into a few subsets of spikes where each subset is contributed by one presynaptic bipolar cell. Taken together, these results corroborate that STNMF is a useful method for deciphering the structure of neuronal circuits.

preprint2020arXiv

Probabilistic Inference of Binary Markov Random Fields in Spiking Neural Networks through Mean-field Approximation

Recent studies have suggested that the cognitive process of the human brain is realized as probabilistic inference and can be further modeled by probabilistic graphical models like Markov random fields. Nevertheless, it remains unclear how probabilistic inference can be implemented by a network of spiking neurons in the brain. Previous studies have tried to relate the inference equation of binary Markov random fields to the dynamic equation of spiking neural networks through belief propagation algorithm and reparameterization, but they are valid only for Markov random fields with limited network structure. In this paper, we propose a spiking neural network model that can implement inference of arbitrary binary Markov random fields. Specifically, we design a spiking recurrent neural network and prove that its neuronal dynamics are mathematically equivalent to the inference process of Markov random fields by adopting mean-field theory. Furthermore, our mean-field approach unifies previous works. Theoretical analysis and experimental results, together with the application to image denoising, demonstrate that our proposed spiking neural network can get comparable results to that of mean-field inference.

preprint2020arXiv

Reconstruction of Natural Visual Scenes from Neural Spikes with Deep Neural Networks

Neural coding is one of the central questions in systems neuroscience for understanding how the brain processes stimulus from the environment, moreover, it is also a cornerstone for designing algorithms of brain-machine interface, where decoding incoming stimulus is highly demanded for better performance of physical devices. Traditionally researchers have focused on functional magnetic resonance imaging (fMRI) data as the neural signals of interest for decoding visual scenes. However, our visual perception operates in a fast time scale of millisecond in terms of an event termed neural spike. There are few studies of decoding by using spikes. Here we fulfill this aim by developing a novel decoding framework based on deep neural networks, named spike-image decoder (SID), for reconstructing natural visual scenes, including static images and dynamic videos, from experimentally recorded spikes of a population of retinal ganglion cells. The SID is an end-to-end decoder with one end as neural spikes and the other end as images, which can be trained directly such that visual scenes are reconstructed from spikes in a highly accurate fashion. Our SID also outperforms on the reconstruction of visual stimulus compared to existing fMRI decoding models. In addition, with the aid of a spike encoder, we show that SID can be generalized to arbitrary visual scenes by using the image datasets of MNIST, CIFAR10, and CIFAR100. Furthermore, with a pre-trained SID, one can decode any dynamic videos to achieve real-time encoding and decoding of visual scenes by spikes. Altogether, our results shed new light on neuromorphic computing for artificial visual systems, such as event-based visual cameras and visual neuroprostheses.

preprint2020arXiv

Revealing Fine Structures of the Retinal Receptive Field by Deep Learning Networks

Deep convolutional neural networks (CNNs) have demonstrated impressive performance on many visual tasks. Recently, they became useful models for the visual system in neuroscience. However, it is still not clear what are learned by CNNs in terms of neuronal circuits. When a deep CNN with many layers is used for the visual system, it is not easy to compare the structure components of CNNs with possible neuroscience underpinnings due to highly complex circuits from the retina to higher visual cortex. Here we address this issue by focusing on single retinal ganglion cells with biophysical models and recording data from animals. By training CNNs with white noise images to predict neuronal responses, we found that fine structures of the retinal receptive field can be revealed. Specifically, convolutional filters learned are resembling biological components of the retinal circuit. This suggests that a CNN learning from one single retinal cell reveals a minimal neural network carried out in this cell. Furthermore, when CNNs learned from different cells are transferred between cells, there is a diversity of transfer learning performance, which indicates that CNNs are cell-specific. Moreover, when CNNs are transferred between different types of input images, here white noise v.s. natural images, transfer learning shows a good performance, which implies that CNNs indeed capture the full computational ability of a single retinal cell for different inputs. Taken together, these results suggest that CNNs could be used to reveal structure components of neuronal circuits, and provide a powerful model for neural system identification.

preprint2020arXiv

Towards the Next Generation of Retinal Neuroprosthesis: Visual Computation with Spikes

Neuroprosthesis, as one type of precision medicine device, is aiming for manipulating neuronal signals of the brain in a closed-loop fashion, together with receiving stimulus from the environment and controlling some part of our brain/body. In terms of vision, incoming information can be processed by the brain in millisecond interval. The retina computes visual scenes and then sends its output as neuronal spikes to the cortex for further computation. Therefore, the neuronal signal of interest for retinal neuroprosthesis is spike. Closed-loop computation in neuroprosthesis includes two stages: encoding stimulus to neuronal signal, and decoding it into stimulus. Here we review some of the recent progress about visual computation models that use spikes for analyzing natural scenes, including static images and dynamic movies. We hypothesize that for a better understanding of computational principles in the retina, one needs a hypercircuit view of the retina, in which different functional network motifs revealed in the cortex neuronal network should be taken into consideration for the retina. Different building blocks of the retina, including a diversity of cell types and synaptic connections, either chemical synapses or electrical synapses (gap junctions), make the retina an ideal neuronal network to adapt the computational techniques developed in artificial intelligence for modeling of encoding/decoding visual scenes. Altogether, one needs a systems approach of visual computation with spikes to advance the next generation of retinal neuroprosthesis as an artificial visual system.

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