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Yuanyuan Wang

Yuanyuan Wang contributes to research discovery and scholarly infrastructure.

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Published work

17 published item(s)

preprint2026arXiv

DepthPilot: From Controllability to Interpretability in Colonoscopy Video Generation

Controllable medical video generation has achieved remarkable progress, but it still lacks interpretability, which requires the alignment of generated contents with physical priors and faithful clinical manifestations. To push the boundaries from mere controllability to interpretability, we propose DepthPilot, the first interpretable framework for colonoscopy video generation. This work takes a step toward trustworthy generation through two synergistic paradigms. To achieve explicit geometric grounding, DepthPilot devises a prior distribution alignment strategy, injecting depth constraints into the diffusion backbone via parameter-efficient fine-tuning to ensure anatomical fidelity. To enhance intrinsic nonlinear modeling under these geometric constraints, DepthPilot employs an adaptive spline denoising module, replacing fixed linear weights with learnable spline functions to capture complex spatio-temporal dynamics. Extensive evaluations across three public datasets and in-house clinical data confirm DepthPilot's robust ability to produce physically consistent videos. It achieves FID scores below 15 across all benchmarks and ranks first in clinician assessments, bridging the gap between "visually realistic" and "clinically interpretable". Moreover, DepthPilot-generated videos are expected to enable reliable 3D reconstruction, facilitating surgical navigation and blind region identification, and serve as a foundation toward the colorectal world model.

preprint2026arXiv

Reconstructing Building Height from Spaceborne TomoSAR Point Clouds Using a Dual-Topology Network

Reliable building height estimation is essential for various urban applications. Spaceborne SAR tomography (TomoSAR) provides weather-independent, side-looking observations that capture facade-level structure, offering a promising alternative to conventional optical methods. However, TomoSAR point clouds often suffer from noise, anisotropic point distributions, and data voids on incoherent surfaces, all of which hinder accurate height reconstruction. To address these challenges, we introduce a learning-based framework for converting raw TomoSAR points into high-resolution building height maps. Our dual-topology network alternates between a point branch that models irregular scatterer features and a grid branch that enforces spatial consistency. By jointly processing these representations, the network denoises the input points and inpaints missing regions to produce continuous height estimates. To our knowledge, this is the first proof of concept for large-scale urban height mapping directly from TomoSAR point clouds. Extensive experiments on data from Munich and Berlin validate the effectiveness of our approach. Moreover, we demonstrate that our framework can be extended to incorporate optical satellite imagery, further enhancing reconstruction quality. The source code is available at https://github.com/zhu-xlab/tomosar2height.

preprint2024arXiv

Exploring the partonic collectivity in small systems at the LHC

Using the Hydro-Coal-Frag model that combines hydrodynamics at low $p_{\rm T}$, quark coalescence at intermediate $p_{\rm T}$, and the LBT transport model at high $p_{\rm T}$, we study the spectra and elliptic flow of identified hadrons in high multiplicity p--Pb and p--p collisions at the Large Hadron Collider (LHC). In p--Pb collisions, the Hydro-Coal-Frag model gives a good description of the differential elliptic flow over the $p_{\rm T}$ range from 0 to 6 GeV and the approximate number of constituent quark (NCQ) scaling at intermediate $p_{\rm T}$. Although Hydro-Coal-Frag model can also roughly describe the elliptic flow in high multiplicity p--p collisions with the quark coalescence process, the larger contribution from the string fragmentations leads to a notable violation of the NCQ scaling of $v_2$ at intermediate $p_{\rm T}$ as observed in the experiment. Comparison runs of the Hydro-Frag model without the coalescence process demonstrate that regardless the parameter adjustments, the Hydro-Frag model cannot simultaneously describe the $p_{\rm T}$ spectra and the elliptic flow of identified hadrons in either p--Pb collisions or p--p collisions. The calculations in this paper thus provide support for the existence of partonic degrees of freedom and the possible formation of the QGP in the small systems created at the LHC.

preprint2024arXiv

USFM: A Universal Ultrasound Foundation Model Generalized to Tasks and Organs towards Label Efficient Image Analysis

Inadequate generality across different organs and tasks constrains the application of ultrasound (US) image analysis methods in smart healthcare. Building a universal US foundation model holds the potential to address these issues. Nevertheless, the development of such foundational models encounters intrinsic challenges in US analysis, i.e., insufficient databases, low quality, and ineffective features. In this paper, we present a universal US foundation model, named USFM, generalized to diverse tasks and organs towards label efficient US image analysis. First, a large-scale Multi-organ, Multi-center, and Multi-device US database was built, comprehensively containing over two million US images. Organ-balanced sampling was employed for unbiased learning. Then, USFM is self-supervised pre-trained on the sufficient US database. To extract the effective features from low-quality US images, we proposed a spatial-frequency dual masked image modeling method. A productive spatial noise addition-recovery approach was designed to learn meaningful US information robustly, while a novel frequency band-stop masking learning approach was also employed to extract complex, implicit grayscale distribution and textural variations. Extensive experiments were conducted on the various tasks of segmentation, classification, and image enhancement from diverse organs and diseases. Comparisons with representative US image analysis models illustrate the universality and effectiveness of USFM. The label efficiency experiments suggest the USFM obtains robust performance with only 20% annotation, laying the groundwork for the rapid development of US models in clinical practices.

preprint2023arXiv

Cooperation Learning Enhanced Colonic Polyp Segmentation Based on Transformer-CNN Fusion

Traditional segmentation methods for colonic polyps are mainly designed based on low-level features. They could not accurately extract the location of small colonic polyps. Although the existing deep learning methods can improve the segmentation accuracy, their effects are still unsatisfied. To meet the above challenges, we propose a hybrid network called Fusion-Transformer-HardNetMSEG (i.e., Fu-TransHNet) in this study. Fu-TransHNet uses deep learning of different mechanisms to fuse each other and is enhanced with multi-view collaborative learning techniques. Firstly, the Fu-TransHNet utilizes the Transformer branch and the CNN branch to realize the global feature learning and local feature learning, respectively. Secondly, a fusion module is designed to integrate the features from two branches. The fusion module consists of two parts: 1) the Global-Local Feature Fusion (GLFF) part and 2) the Dense Fusion of Multi-scale features (DFM) part. The former is built to compensate the feature information mission from two branches at the same scale; the latter is constructed to enhance the feature representation. Thirdly, the above two branches and fusion modules utilize multi-view cooperative learning techniques to obtain their respective weights that denote their importance and then make a final decision comprehensively. Experimental results showed that the Fu-TransHNet network was superior to the existing methods on five widely used benchmark datasets. In particular, on the ETIS-LaribPolypDB dataset containing many small-target colonic polyps, the mDice obtained by Fu-TransHNet were 12.4% and 6.2% higher than the state-of-the-art methods HardNet-MSEG and TransFuse-s, respectively.

preprint2022arXiv

Axial inverse magnetic catalysis

We find that the inverse magnetic catalysis for $U(1)$ axial symmetry (AIMC: axial inverse magnetic catalysis) can emerge around the chiral crossover regime in the thermomagnetic QCD with 2 + 1 flavors at physical point. This phenomenon can be correlated with the IMC for the chiral $SU(2)_L \times SU(2)_R$ symmetry (CIMC: chiral IMC). We explicitly observe the AIMC based on a Nambu-Jona-Lasinio model with 2 + 1 quark flavors, where introduced anomalous magnetic moments of the quarks play the essential role to drive both the CIMC and AIMC. Our finding is shortly testable on lattices. Possible phenomenological and cosmological implications are also briefly addressed.

preprint2022arXiv

Deep Recursive Embedding for High-Dimensional Data

t-distributed stochastic neighbor embedding (t-SNE) is a well-established visualization method for complex high-dimensional data. However, the original t-SNE method is nonparametric, stochastic, and often cannot well prevserve the global structure of data as it emphasizes local neighborhood. With t-SNE as a reference, we propose to combine the deep neural network (DNN) with the mathematical-grounded embedding rules for high-dimensional data embedding. We first introduce a deep embedding network (DEN) framework, which can learn a parametric mapping from high-dimensional space to low-dimensional embedding. DEN has a flexible architecture that can accommodate different input data (vector, image, or tensor) and loss functions. To improve the embedding performance, a recursive training strategy is proposed to make use of the latent representations extracted by DEN. Finally, we propose a two-stage loss function combining the advantages of two popular embedding methods, namely, t-SNE and uniform manifold approximation and projection (UMAP), for optimal visualization effect. We name the proposed method Deep Recursive Embedding (DRE), which optimizes DEN with a recursive training strategy and two-stage losse. Our experiments demonstrated the excellent performance of the proposed DRE method on high-dimensional data embedding, across a variety of public databases. Remarkably, our comparative results suggested that our proposed DRE could lead to improved global structure preservation.

preprint2022arXiv

Deep Recursive Embedding for High-Dimensional Data

Embedding high-dimensional data onto a low-dimensional manifold is of both theoretical and practical value. In this paper, we propose to combine deep neural networks (DNN) with mathematics-guided embedding rules for high-dimensional data embedding. We introduce a generic deep embedding network (DEN) framework, which is able to learn a parametric mapping from high-dimensional space to low-dimensional space, guided by well-established objectives such as Kullback-Leibler (KL) divergence minimization. We further propose a recursive strategy, called deep recursive embedding (DRE), to make use of the latent data representations for boosted embedding performance. We exemplify the flexibility of DRE by different architectures and loss functions, and benchmarked our method against the two most popular embedding methods, namely, t-distributed stochastic neighbor embedding (t-SNE) and uniform manifold approximation and projection (UMAP). The proposed DRE method can map out-of-sample data and scale to extremely large datasets. Experiments on a range of public datasets demonstrated improved embedding performance in terms of local and global structure preservation, compared with other state-of-the-art embedding methods.

preprint2022arXiv

Evaluating the Practicality of Learned Image Compression

Learned image compression has achieved extraordinary rate-distortion performance in PSNR and MS-SSIM compared to traditional methods. However, it suffers from intensive computation, which is intolerable for real-world applications and leads to its limited industrial application for now. In this paper, we introduce neural architecture search (NAS) to designing more efficient networks with lower latency, and leverage quantization to accelerate the inference process. Meanwhile, efforts in engineering like multi-threading and SIMD have been made to improve efficiency. Optimized using a hybrid loss of PSNR and MS-SSIM for better visual quality, we obtain much higher MS-SSIM than JPEG, JPEG XL and AVIF over all bit rates, and PSNR between that of JPEG XL and AVIF. Our software implementation of LIC achieves comparable or even faster inference speed compared to jpeg-turbo while being multiple times faster than JPEG XL and AVIF. Besides, our implementation of LIC reaches stunning throughput of 145 fps for encoding and 208 fps for decoding on a Tesla T4 GPU for 1080p images. On CPU, the latency of our implementation is comparable with JPEG XL.

preprint2022arXiv

Practical Learned Lossless JPEG Recompression with Multi-Level Cross-Channel Entropy Model in the DCT Domain

JPEG is a popular image compression method widely used by individuals, data center, cloud storage and network filesystems. However, most recent progress on image compression mainly focuses on uncompressed images while ignoring trillions of already-existing JPEG images. To compress these JPEG images adequately and restore them back to JPEG format losslessly when needed, we propose a deep learning based JPEG recompression method that operates on DCT domain and propose a Multi-Level Cross-Channel Entropy Model to compress the most informative Y component. Experiments show that our method achieves state-of-the-art performance compared with traditional JPEG recompression methods including Lepton, JPEG XL and CMIX. To the best of our knowledge, this is the first learned compression method that losslessly transcodes JPEG images to more storage-saving bitstreams.

preprint2021arXiv

$\boldsymbolγ$-Net: Superresolving SAR Tomographic Inversion via Deep Learning

Synthetic aperture radar tomography (TomoSAR) has been extensively employed in 3-D reconstruction in dense urban areas using high-resolution SAR acquisitions. Compressive sensing (CS)-based algorithms are generally considered as the state of the art in super-resolving TomoSAR, in particular in the single look case. This superior performance comes at the cost of extra computational burdens, because of the sparse reconstruction, which cannot be solved analytically and we need to employ computationally expensive iterative solvers. In this paper, we propose a novel deep learning-based super-resolving TomoSAR inversion approach, $\boldsymbolγ$-Net, to tackle this challenge. $\boldsymbolγ$-Net adopts advanced complex-valued learned iterative shrinkage thresholding algorithm (CV-LISTA) to mimic the iterative optimization step in sparse reconstruction. Simulations show the height estimate from a well-trained $\boldsymbolγ$-Net approaches the Cramér-Rao lower bound while improving the computational efficiency by 1 to 2 orders of magnitude comparing to the first-order CS-based methods. It also shows no degradation in the super-resolution power comparing to the state-of-the-art second-order TomoSAR solvers, which are much more computationally expensive than the first-order methods. Specifically, $\boldsymbolγ$-Net reaches more than $90\%$ detection rate in moderate super-resolving cases at 25 measurements at 6dB SNR. Moreover, simulation at limited baselines demonstrates that the proposed algorithm outperforms the second-order CS-based method by a fair margin. Test on real TerraSAR-X data with just 6 interferograms also shows high-quality 3-D reconstruction with high-density detected double scatterers.

preprint2021arXiv

Dimension reduction induced anisotropic magnetic thermal conductivity in hematite nanowire

The thermophysical properties near the magnetic phase transition point is of great importance in the study of critical phenomenon. Low-dimensional materials are suggested to hold different thermophysical properties comparing to their bulk counterpart due to the dimension induced quantum confinement and anisotropy. In this work, we measured the thermal conductivity of $α$-Fe$_2$O$_3$ nanowires along [110] direction (growing direction) with temperature from 100K to 150K and found a dip of thermal conductivity near the Morin temperature. We found the thermal conductivity near Morin temperature varies with the angle between magnetic field and [110] direction of nanowire. More specifically, an angular-dependent thermal conductivity is observed, due to the magnetic field induced movement of magnetic domain wall. The angle corresponding to the maximum of thermal conductivity varies near the Morin transition temperature, due to the different magnetic easy axis as suggested by our calculation based on magnetic anisotropy energy. This angular dependence of thermal conductivity indicates that the easy axis of $α$-Fe$_2$O$_3$ nanowires is different from bulk $α$-Fe$_2$O$_3$ due to the geometric anisotropy.

preprint2020arXiv

A Global Benchmark of Algorithms for Segmenting Late Gadolinium-Enhanced Cardiac Magnetic Resonance Imaging

Segmentation of cardiac images, particularly late gadolinium-enhanced magnetic resonance imaging (LGE-MRI) widely used for visualizing diseased cardiac structures, is a crucial first step for clinical diagnosis and treatment. However, direct segmentation of LGE-MRIs is challenging due to its attenuated contrast. Since most clinical studies have relied on manual and labor-intensive approaches, automatic methods are of high interest, particularly optimized machine learning approaches. To address this, we organized the "2018 Left Atrium Segmentation Challenge" using 154 3D LGE-MRIs, currently the world's largest cardiac LGE-MRI dataset, and associated labels of the left atrium segmented by three medical experts, ultimately attracting the participation of 27 international teams. In this paper, extensive analysis of the submitted algorithms using technical and biological metrics was performed by undergoing subgroup analysis and conducting hyper-parameter analysis, offering an overall picture of the major design choices of convolutional neural networks (CNNs) and practical considerations for achieving state-of-the-art left atrium segmentation. Results show the top method achieved a dice score of 93.2% and a mean surface to a surface distance of 0.7 mm, significantly outperforming prior state-of-the-art. Particularly, our analysis demonstrated that double, sequentially used CNNs, in which a first CNN is used for automatic region-of-interest localization and a subsequent CNN is used for refined regional segmentation, achieved far superior results than traditional methods and pipelines containing single CNNs. This large-scale benchmarking study makes a significant step towards much-improved segmentation methods for cardiac LGE-MRIs, and will serve as an important benchmark for evaluating and comparing the future works in the field.

preprint2020arXiv

Generative Adversarial Networks for Synthesizing InSAR Patches

Generative Adversarial Networks (GANs) have been employed with certain success for image translation tasks between optical and real-valued SAR intensity imagery. Applications include aiding interpretability of SAR scenes with their optical counterparts by artificial patch generation and automatic SAR-optical scene matching. The synthesis of artificial complex-valued InSAR image stacks asks for, besides good perceptual quality, more stringent quality metrics like phase noise and phase coherence. This paper provides a signal processing model of generative CNN structures, describes effects influencing those quality metrics and presents a mapping scheme of complex-valued data to given CNN structures based on popular Deep Learning frameworks.

preprint2020arXiv

Interlayer Coupling Effect in van der Waals Heterostructures of Transition Metal Dichalcogenides

Van der Waals (vdW) heterobilayers formed by two-dimensional (2D) transition metal dichalcogenides (TMDCs) created a promising platform for various electronic and optical properties. ab initio band results indicate that the band offset of type-II band alignment in TMDCs vdW heterobilayer could be tuned by introducing Janus WSSe monolayer, instead of an external electric field. On the basis of symmetry analysis, the allowed interlayer hopping channels of TMDCs vdW heterobilayer were determined, and a four-level kp model was developed to obtain the interlayer hopping. Results indicate that the interlayer coupling strength could be tuned by interlayer electric polarization featured by various band offsets. Moreover, the difference in the formation mechanism of interlayer valley excitons in different TMDCs vdW heterobilayers with various interlayer hopping strength was also clarified.

preprint2020arXiv

Multipass SAR Interferometry Based on Total Variation Regularized Robust Low Rank Tensor Decomposition

Multipass SAR interferometry (InSAR) techniques based on meter-resolution spaceborne SAR satellites, such as TerraSAR-X or COSMO-Skymed, provide 3D reconstruction and the measurement of ground displacement over large urban areas. Conventional method such as Persistent Scatterer Interferometry (PSI) usually requires a fairly large SAR image stack (usually in the order of tens), in order to achieve reliable estimates of these parameters. Recently, low rank property in multipass InSAR data stack was explored and investigated in our previous work. By exploiting this low rank prior, more accurate estimation of the geophysical parameters can be achieved, which in turn can effectively reduce the number of interferograms required for a reliable estimation. Based on that, this paper proposes a novel tensor decomposition method in complex domain, which jointly exploits low rank and variational prior of the interferometric phase in InSAR data stacks. Specifically, a total variation (TV) regularized robust low rank tensor decomposition method is exploited for recovering outlier-free InSAR stacks. We demonstrate that the filtered InSAR data stacks can greatly improve the accuracy of geophysical parameters estimated from real data. Moreover, this paper demonstrates for the first time in the community that tensor-decomposition-based methods can be beneficial for large-scale urban mapping problems using multipass InSAR. Two TerraSAR-X data stacks with large spatial areas demonstrate the promising performance of the proposed method.

preprint2019arXiv

A Thermal Resistance Network Model for Heat Conduction of Amorphous Polymers

Thermal conductivities (TCs) of the vast majority of amorphous polymers are in a very narrow range, 0.1 $\sim$ 0.5 Wm$^{-1}$K$^{-1}$, although single polymer chains possess TC of orders-of-magnitude higher. Entanglement of polymer chains plays an important role in determining the TC of bulk polymers. We propose a thermal resistance network (TRN) model for TC in amorphous polymers taking into account the entanglement of molecular chains. Our model explains well the physical origin of universally low TC observed in amorphous polymers. The empirical formulae of pressure and temperature dependence of TC can be successfully reproduced from our model not only in solid polymers but also in polymer melts. We further quantitatively explain the anisotropic TC in oriented polymers.