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Researcher profile

Yanfang Ye

Yanfang Ye contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine LearningArtificial IntelligenceCryptography and SecuritySocial and Information NetworksComputation and LanguageComputer Visioncs.CYDigital Librarieseess.IVMultiagent SystemsPopulations and Evolution

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Published work

14 published item(s)

preprint2026arXiv

Agent+P: Guiding UI Agents via Symbolic Planning

Large Language Model (LLM)-based UI agents show great promise for UI automation but often hallucinate in long-horizon tasks due to their lack of understanding of the global UI transition structure. To address this, we introduce AGENT+P, a novel framework that leverages symbolic planning to guide LLM-based UI agents. Specifically, we model an app's UI transition structure as a UI Transition Graph (UTG), which allows us to reformulate the UI automation task as a pathfinding problem on the UTG. This further enables an off-the-shelf symbolic planner to generate a provably correct and optimal high-level plan, preventing the agent from redundant exploration and guiding the agent to achieve the automation goals. AGENT+P is designed as a plug-and-play framework to enhance existing UI agents. Evaluation on the AndroidWorld benchmark demonstrates that AGENT+P improves the success rates of state-of-the-art UI agents by up to 14.31% and reduces the action steps by 37.70%.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

GRID: Graph Representation of Intelligence Data for Security Text Knowledge Graph Construction

Security knowledge graphs can provide computable external memory for security agents, but constructing them from long-form cyber threat intelligence (CTI) remains difficult: LLMs often lack grounded security-domain knowledge, and end-to-end document-to-graph training is hard to supervise with cheap, stable rewards. We present GRID (Graph Representation of Intelligence Data), an end-to-end framework for security text knowledge graph construction. GRID first builds security-domain supervision from CTI articles by creating traceable article-graph alignments through graph extraction and knowledge-graph-conditioned text revision. It then turns document-to-graph learning into a scripted task bank combining four-option multi-select questions with triple-level regex matching targets, yielding more stable task-specific rewards than repeatedly scoring full graph outputs with an LLM judge. Using this supervision pipeline, we train two Qwen3-4B-Instruct-2507-based 4B extractors: a primary Task-bank Reward model and a secondary End2End Reward model with LLM-as-judge precision/recall rewards. On 249 CTI articles from GRID, CASIE, CTINexus, MalKG, and SecureNLP, the Task-bank Reward model with the ontology-guided GRID extraction pipeline reaches 84.62% source-averaged precision, 64.91% source-averaged recall, and 68.53% Avg F1, achieving the best source-averaged recall and near-top Avg F1 with lower token usage and deployment cost. The End2End Reward model reaches 76.91% precision, 53.85% recall, and 58.06% Avg F1. Further analyses show that task-bank rewards can be built once offline and reused across later post-training runs, outperforming online End2End LLM-as-judge reward and weaker alternatives such as Choice-only Reward and End2End SFT without RL.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

Hypergraph Pattern Machine: Compositional Tokenization for Higher-Order Interactions

Hypergraphs model higher-order relations that drive real-world decisions, from drug prescriptions to recommendations. A central structural signal in such data, beyond what pairwise relations can express, is interaction compositionality: whether a higher-order relation is compositional, emergent, or inhibitory with respect to its observed or unobserved sets. In polypharmacy, the regime decides whether a drug should be dropped, kept, or excluded: a compositional drug triple can be safely simplified, an emergent triple requires all drugs jointly, and an inhibitory triple flags a drug that disrupts an existing interaction. However, existing hypergraph learning methods, which merely propagate messages over observed hyperedges, leave this compositional signal unmodeled, allowing dangerous drug combinations to slip through and be misclassified. To this end, we propose the Hypergraph Pattern Machine (HGPM), shifting the paradigm from message passing to learning the compositional pattern of subsets. It tokenizes compositional subsets, organizes them in an inclusion DAG, and trains an inclusion-aware Transformer under masked reconstruction. On ten hypergraph benchmarks, HGPM matches or exceeds state-of-the-art methods. Notably, in a real adverse-event prediction case, HGPM correctly identifies the drug addition that inhibits the side effect among feature-identical candidates, a discrimination existing methods cannot make. The code and data are in https://github.com/KryieZhao/HGPM.git.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

LongDA: Benchmarking LLM Agents for Long-Document Data Analysis

We introduce LongDA, a data analysis benchmark for evaluating LLM-based agents under documentation-intensive analytical workflows. In contrast to existing benchmarks that assume well-specified schemas and inputs, LongDA targets real-world settings in which navigating long documentation and complex data is the primary bottleneck. To this end, we manually curate raw data files, long and heterogeneous documentation, and expert-written publications from 17 publicly available U.S. national surveys, from which we extract 505 analytical queries grounded in real analytical practice. Solving these queries requires agents to first retrieve and integrate key information from multiple unstructured documents, before performing multi-step computations and writing executable code, which remains challenging for existing data analysis agents. To support the systematic evaluation under this setting, we develop LongTA, a tool-augmented agent framework that enables document access, retrieval, and code execution, and evaluate a range of proprietary and open-source models. Our experiments reveal substantial performance gaps even among state-of-the-art models, highlighting the challenges researchers should consider before applying LLM agents for decision support in real-world, high-stakes analytical settings.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

On the Safety of Graph Representation Learning

Graph representation learning (GRL) has evolved from topology-only graph embeddings to task-specific supervised GNNs, and more recently to reusable representations and graph foundation models (GFMs). However, existing evaluations mainly measure clean transfer, adaptation, and task coverage. It remains unclear whether GRL methods stay reliable when deployment stresses affect graph signals, graph contexts, label support, structural groups, or predictive evidence. We introduce GRL-Safety, a multi-axis safety evaluation benchmark for GRL. GRL-Safety evaluates twelve representative methods, spanning topology-only embedding methods, supervised GNNs, self-supervised graph models, and GFMs, on twenty-five graph datasets under standardized evaluation conditions while preserving method-native adaptation. The evaluation covers five safety axes: corruption robustness, OOD generalization, class imbalance, fairness, and interpretation, with per-axis and sub-condition reporting rather than a single aggregate score. Our analysis yields three cross-axis insights that can inspire future research. First, safety behavior is shaped by the interaction between representation design and the stressed graph factor, rather than by method family alone. Second, foundation-era methods show axis-specific strengths rather than broad safety dominance. Third, several deployment regimes remain difficult even for the best evaluated method, revealing capability gaps that require new robustness, adaptation, or training objectives beyond model selection. The benchmark, evaluation protocols, and code are available at: https://github.com/GXG-CS/GRL-Safety.

0 citations0 reviewsNo code linkedOpen access
preprint2026arXiv

PreScam: A Benchmark for Predicting Scam Progression from Early Conversations

Conversational scams, such as romance and investment scams, are emerging as a major form of online fraud. Unlike one-shot scam lures such as fake lottery or unpaid toll messages, they unfold through multi-turn conversations in which scammers gradually manipulate victims using evolving psychological techniques. However, existing research mainly focuses on static scam detection or synthetic scams, leaving open whether language models can understand how real-world scams progress over time. We introduce PreScam, a benchmark for modeling scam progression from early conversations. Built from user-submitted scam reports, PreScam filters and structures 177,989 raw reports into 11,573 conversational scam instances spanning 20 scam categories. Each instance is hierarchically structured according to the scam lifecycle defined by the proposed scam kill chain, and further annotated at the turn level with scammer psychological actions and victim responses. We benchmark models on two tasks: real-time termination prediction, which estimates whether a conversation is approaching the termination stage, and scammer action prediction, which forecasts the scammer's subsequent actions. Results show a clear gap between surface-level fluency and progression modeling: supervised encoders substantially outperform zero-shot LLMs on real-time termination prediction, while next-action prediction remains only moderately successful even for strong LLMs. Taken together, these results show that current models can capture some scam-related cues, yet still struggle to track how risk escalates and how manipulation unfolds across turns.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Disentangled Spatiotemporal Graph Generative Models

Spatiotemporal graph represents a crucial data structure where the nodes and edges are embedded in a geometric space and can evolve dynamically over time. Nowadays, spatiotemporal graph data is becoming increasingly popular and important, ranging from microscale (e.g. protein folding), to middle-scale (e.g. dynamic functional connectivity), to macro-scale (e.g. human mobility network). Although disentangling and understanding the correlations among spatial, temporal, and graph aspects have been a long-standing key topic in network science, they typically rely on network processing hypothesized by human knowledge. This usually fit well towards the graph properties which can be predefined, but cannot do well for the most cases, especially for many key domains where the human has yet very limited knowledge such as protein folding and biological neuronal networks. In this paper, we aim at pushing forward the modeling and understanding of spatiotemporal graphs via new disentangled deep generative models. Specifically, a new Bayesian model is proposed that factorizes spatiotemporal graphs into spatial, temporal, and graph factors as well as the factors that explain the interplay among them. A variational objective function and new mutual information thresholding algorithms driven by information bottleneck theory have been proposed to maximize the disentanglement among the factors with theoretical guarantees. Qualitative and quantitative experiments on both synthetic and real-world datasets demonstrate the superiority of the proposed model over the state-of-the-arts by up to 69.2% for graph generation and 41.5% for interpretability.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Few-Shot Learning on Graphs

Graph representation learning has attracted tremendous attention due to its remarkable performance in many real-world applications. However, prevailing supervised graph representation learning models for specific tasks often suffer from label sparsity issue as data labeling is always time and resource consuming. In light of this, few-shot learning on graphs (FSLG), which combines the strengths of graph representation learning and few-shot learning together, has been proposed to tackle the performance degradation in face of limited annotated data challenge. There have been many studies working on FSLG recently. In this paper, we comprehensively survey these work in the form of a series of methods and applications. Specifically, we first introduce FSLG challenges and bases, then categorize and summarize existing work of FSLG in terms of three major graph mining tasks at different granularity levels, i.e., node, edge, and graph. Finally, we share our thoughts on some future research directions of FSLG. The authors of this survey have contributed significantly to the AI literature on FSLG over the last few years.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A Framework for Enhancing Deep Neural Networks Against Adversarial Malware

Machine learning-based malware detection is known to be vulnerable to adversarial evasion attacks. The state-of-the-art is that there are no effective defenses against these attacks. As a response to the adversarial malware classification challenge organized by the MIT Lincoln Lab and associated with the AAAI-19 Workshop on Artificial Intelligence for Cyber Security (AICS'2019), we propose six guiding principles to enhance the robustness of deep neural networks. Some of these principles have been scattered in the literature, but the others are introduced in this paper for the first time. Under the guidance of these six principles, we propose a defense framework to enhance the robustness of deep neural networks against adversarial malware evasion attacks. By conducting experiments with the Drebin Android malware dataset, we show that the framework can achieve a 98.49\% accuracy (on average) against grey-box attacks, where the attacker knows some information about the defense and the defender knows some information about the attack, and an 89.14% accuracy (on average) against the more capable white-box attacks, where the attacker knows everything about the defense and the defender knows some information about the attack. The framework wins the AICS'2019 challenge by achieving a 76.02% accuracy, where neither the attacker (i.e., the challenge organizer) knows the framework or defense nor we (the defender) know the attacks. This gap highlights the importance of knowing about the attack.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

Heterogeneous Graph Attention Network

Graph neural network, as a powerful graph representation technique based on deep learning, has shown superior performance and attracted considerable research interest. However, it has not been fully considered in graph neural network for heterogeneous graph which contains different types of nodes and links. The heterogeneity and rich semantic information bring great challenges for designing a graph neural network for heterogeneous graph. Recently, one of the most exciting advancements in deep learning is the attention mechanism, whose great potential has been well demonstrated in various areas. In this paper, we first propose a novel heterogeneous graph neural network based on the hierarchical attention, including node-level and semantic-level attentions. Specifically, the node-level attention aims to learn the importance between a node and its metapath based neighbors, while the semantic-level attention is able to learn the importance of different meta-paths. With the learned importance from both node-level and semantic-level attention, the importance of node and meta-path can be fully considered. Then the proposed model can generate node embedding by aggregating features from meta-path based neighbors in a hierarchical manner. Extensive experimental results on three real-world heterogeneous graphs not only show the superior performance of our proposed model over the state-of-the-arts, but also demonstrate its potentially good interpretability for graph analysis.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

$α$-Satellite: An AI-driven System and Benchmark Datasets for Hierarchical Community-level Risk Assessment to Help Combat COVID-19

The novel coronavirus and its deadly outbreak have posed grand challenges to human society: as of March 26, 2020, there have been 85,377 confirmed cases and 1,293 reported deaths in the United States; and the World Health Organization (WHO) characterized coronavirus disease (COVID-19) - which has infected more than 531,000 people with more than 24,000 deaths in at least 171 countries - a global pandemic. A growing number of areas reporting local sub-national community transmission would represent a significant turn for the worse in the battle against the novel coronavirus, which points to an urgent need for expanded surveillance so we can better understand the spread of COVID-19 and thus better respond with actionable strategies for community mitigation. By advancing capabilities of artificial intelligence (AI) and leveraging the large-scale and real-time data generated from heterogeneous sources (e.g., disease related data from official public health organizations, demographic data, mobility data, and user geneated data from social media), in this work, we propose and develop an AI-driven system (named $α$-Satellite}, as an initial offering, to provide hierarchical community-level risk assessment to assist with the development of strategies for combating the fast evolving COVID-19 pandemic. More specifically, given a specific location (either user input or automatic positioning), the developed system will automatically provide risk indexes associated with it in a hierarchical manner (e.g., state, county, city, specific location) to enable individuals to select appropriate actions for protection while minimizing disruptions to daily life to the extent possible. The developed system and the generated benchmark datasets have been made publicly accessible through our website. The system description and disclaimer are also available in our website.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Enhancing Robustness of Deep Neural Networks Against Adversarial Malware Samples: Principles, Framework, and AICS'2019 Challenge

Malware continues to be a major cyber threat, despite the tremendous effort that has been made to combat them. The number of malware in the wild steadily increases over time, meaning that we must resort to automated defense techniques. This naturally calls for machine learning based malware detection. However, machine learning is known to be vulnerable to adversarial evasion attacks that manipulate a small number of features to make classifiers wrongly recognize a malware sample as a benign one. The state-of-the-art is that there are no effective countermeasures against these attacks. Inspired by the AICS'2019 Challenge, we systematize a number of principles for enhancing the robustness of neural networks against adversarial malware evasion attacks. Some of these principles have been scattered in the literature, but others are proposed in this paper for the first time. Under the guidance of these principles, we propose a framework and an accompanying training algorithm, which are then applied to the AICS'2019 challenge. Our experimental results have been submitted to the challenge organizer for evaluation.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Interpretable Deep Graph Generation with Node-Edge Co-Disentanglement

Disentangled representation learning has recently attracted a significant amount of attention, particularly in the field of image representation learning. However, learning the disentangled representations behind a graph remains largely unexplored, especially for the attributed graph with both node and edge features. Disentanglement learning for graph generation has substantial new challenges including 1) the lack of graph deconvolution operations to jointly decode node and edge attributes; and 2) the difficulty in enforcing the disentanglement among latent factors that respectively influence: i) only nodes, ii) only edges, and iii) joint patterns between them. To address these challenges, we propose a new disentanglement enhancement framework for deep generative models for attributed graphs. In particular, a novel variational objective is proposed to disentangle the above three types of latent factors, with novel architecture for node and edge deconvolutions. Moreover, within each type, individual-factor-wise disentanglement is further enhanced, which is shown to be a generalization of the existing framework for images. Qualitative and quantitative experiments on both synthetic and real-world datasets demonstrate the effectiveness of the proposed model and its extensions.

0 citations0 reviewsNo code linkedOpen access
preprint2020arXiv

Joint Demosaicing and Super-Resolution (JDSR): Network Design and Perceptual Optimization

Image demosaicing and super-resolution are two important tasks in color imaging pipeline. So far they have been mostly independently studied in the open literature of deep learning; little is known about the potential benefit of formulating a joint demosaicing and super-resolution (JDSR) problem. In this paper, we propose an end-to-end optimization solution to the JDSR problem and demonstrate its practical significance in computational imaging. Our technical contributions are mainly two-fold. On network design, we have developed a Residual-Dense Squeeze-and-Excitation Networks (RDSEN) supported by a pre-demosaicing network (PDNet) as the pre-processing step. We address the issue of spatio-spectral attention for color-filter-array (CFA) data and discuss how to achieve better information flow by concatenating Residue-Dense Squeeze-and-Excitation Blocks (RDSEBs) for JDSR. Experimental results have shown that significant PSNR/SSIM gain can be achieved by RDSEN over previous network architectures including state-of-the-art RCAN. On perceptual optimization, we propose to leverage the latest ideas including relativistic discriminator and pre-excitation perceptual loss function to further improve the visual quality of textured regions in reconstructed images. Our extensive experiment results have shown that Texture-enhanced Relativistic average Generative Adversarial Network (TRaGAN) can produce both subjectively more pleasant images and objectively lower perceptual distortion scores than standard GAN for JDSR. Finally, we have verified the benefit of JDSR to high-quality image reconstruction from real-world Bayer pattern data collected by NASA Mars Curiosity.

0 citations0 reviewsNo code linkedOpen access