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Researcher profile

Wensheng Gan

Wensheng Gan contributes to research discovery and scholarly infrastructure.

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Artificial IntelligenceDatabasesMachine Learning

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Published work

10 published item(s)

preprint2026arXiv

Mining Negative Sequential Patterns to Improve Viral Genomic Feature Representation and Classification

Viruses represent the most abundant biological entities on Earth and play a pivotal role in microbial ecosystems, yet, as prominent human pathogens, they are closely linked to human morbidity and mortality. Accurate identification of viral sequences from viral genome sequences is therefore essential, but existing genome-based classification models that largely relying on composition- or frequency-based subsequence features often suffer from limited interpretability and reduced accuracy, particularly on complex or imbalanced datasets. To address these limitations, we propose GeneNSPCla (Genomic Negative Sequential Pattern-based Classification), a novel viral classification framework based on Negative Sequential Patterns (NSPs) that extracts discriminative absence-based features from nucleotide sequences of RNA viral genomes. By transforming these NSPs into numerical feature vectors and integrating them into multiple supervised classifiers, GeneNSPCla effectively captures both presence and absence signals in viral sequences. Furthermore, we propose a negative pattern mining algorithm adapted for processing genomic data: GONPM+, which can discover longer and more biologically meaningful negative sequential patterns. The experimental results demonstrate that the average accuracy of GONPM+ in 8 classifiers has improved by 10.03% compared to the original negative pattern mining algorithm and by 24.75% compared to the positive pattern mining algorithm. These findings highlight the effectiveness of incorporating absence-based sequential information, providing a new and complementary perspective for viral genome analysis and classification.

0 citations0 reviewsNo code linkedOpen access
preprint2025arXiv

Enhancing Temporal Awareness in LLMs for Temporal Point Processes

Temporal point processes (TPPs) are crucial for analyzing events over time and are widely used in fields such as finance, healthcare, and social systems. These processes are particularly valuable for understanding how events unfold over time, accounting for their irregularity and dependencies. Despite the success of large language models (LLMs) in sequence modeling, applying them to temporal point processes remains challenging. A key issue is that current methods struggle to effectively capture the complex interaction between temporal information and semantic context, which is vital for accurate event modeling. In this context, we introduce TPP-TAL (Temporal Point Processes with Enhanced Temporal Awareness in LLMs), a novel plug-and-play framework designed to enhance temporal reasoning within LLMs. Rather than using the conventional method of simply concatenating event time and type embeddings, TPP-TAL explicitly aligns temporal dynamics with contextual semantics before feeding this information into the LLM. This alignment allows the model to better perceive temporal dependencies and long-range interactions between events and their surrounding contexts. Through comprehensive experiments on several benchmark datasets, it is shown that TPP-TAL delivers substantial improvements in temporal likelihood estimation and event prediction accuracy, highlighting the importance of enhancing temporal awareness in LLMs for continuous-time event modeling. The code is made available at https://github.com/chenlilil/TPP-TAL

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

A Generic Algorithm for Top-K On-Shelf Utility Mining

On-shelf utility mining (OSUM) is an emerging research direction in data mining. It aims to discover itemsets that have high relative utility in their selling time period. Compared with traditional utility mining, OSUM can find more practical and meaningful patterns in real-life applications. However, there is a major drawback to traditional OSUM. For normal users, it is hard to define a minimum threshold minutil for mining the right amount of on-shelf high utility itemsets. On one hand, if the threshold is set too high, the number of patterns would not be enough. On the other hand, if the threshold is set too low, too many patterns will be discovered and cause an unnecessary waste of time and memory consumption. To address this issue, the user usually directly specifies a parameter k, where only the top-k high relative utility itemsets would be considered. Therefore, in this paper, we propose a generic algorithm named TOIT for mining Top-k On-shelf hIgh-utility paTterns to solve this problem. TOIT applies a novel strategy to raise the minutil based on the on-shelf datasets. Besides, two novel upper-bound strategies named subtree utility and local utility are applied to prune the search space. By adopting the strategies mentioned above, the TOIT algorithm can narrow the search space as early as possible, improve the mining efficiency, and reduce the memory consumption, so it can obtain better performance than other algorithms. A series of experiments have been conducted on real datasets with different styles to compare the effects with the state-of-the-art KOSHU algorithm. The experimental results showed that TOIT outperforms KOSHU in both running time and memory consumption.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

HUSP-SP: Faster Utility Mining on Sequence Data

High-utility sequential pattern mining (HUSPM) has emerged as an important topic due to its wide application and considerable popularity. However, due to the combinatorial explosion of the search space when the HUSPM problem encounters a low utility threshold or large-scale data, it may be time-consuming and memory-costly to address the HUSPM problem. Several algorithms have been proposed for addressing this problem, but they still cost a lot in terms of running time and memory usage. In this paper, to further solve this problem efficiently, we design a compact structure called sequence projection (seqPro) and propose an efficient algorithm, namely discovering high-utility sequential patterns with the seqPro structure (HUSP-SP). HUSP-SP utilizes the compact seq-array to store the necessary information in a sequence database. The seqPro structure is designed to efficiently calculate candidate patterns' utilities and upper bound values. Furthermore, a new upper bound on utility, namely tighter reduced sequence utility (TRSU) and two pruning strategies in search space, are utilized to improve the mining performance of HUSP-SP. Experimental results on both synthetic and real-life datasets show that HUSP-SP can significantly outperform the state-of-the-art algorithms in terms of running time, memory usage, search space pruning efficiency, and scalability.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Itemset Utility Maximization with Correlation Measure

As an important data mining technology, high utility itemset mining (HUIM) is used to find out interesting but hidden information (e.g., profit and risk). HUIM has been widely applied in many application scenarios, such as market analysis, medical detection, and web click stream analysis. However, most previous HUIM approaches often ignore the relationship between items in an itemset. Therefore, many irrelevant combinations (e.g., \{gold, apple\} and \{notebook, book\}) are discovered in HUIM. To address this limitation, many algorithms have been proposed to mine correlated high utility itemsets (CoHUIs). In this paper, we propose a novel algorithm called the Itemset Utility Maximization with Correlation Measure (CoIUM), which considers both a strong correlation and the profitable values of the items. Besides, the novel algorithm adopts a database projection mechanism to reduce the cost of database scanning. Moreover, two upper bounds and four pruning strategies are utilized to effectively prune the search space. And a concise array-based structure named utility-bin is used to calculate and store the adopted upper bounds in linear time and space. Finally, extensive experimental results on dense and sparse datasets demonstrate that CoIUM significantly outperforms the state-of-the-art algorithms in terms of runtime and memory consumption.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Smart System: Joint Utility and Frequency for Pattern Classification

Nowadays, the environments of smart systems for Industry 4.0 and Internet of Things (IoT) are experiencing fast industrial upgrading. Big data technologies such as design making, event detection, and classification are developed to help manufacturing organizations to achieve smart systems. By applying data analysis, the potential values of rich data can be maximized and thus help manufacturing organizations to finish another round of upgrading. In this paper, we propose two new algorithms with respect to big data analysis, namely UFC$_{gen}$ and UFC$_{fast}$. Both algorithms are designed to collect three types of patterns to help people determine the market positions for different product combinations. We compare these algorithms on various types of datasets, both real and synthetic. The experimental results show that both algorithms can successfully achieve pattern classification by utilizing three different types of interesting patterns from all candidate patterns based on user-specified thresholds of utility and frequency. Furthermore, the list-based UFC$_{fast}$ algorithm outperforms the level-wise-based UFC$_{gen}$ algorithm in terms of both execution time and memory consumption.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

TaSPM: Targeted Sequential Pattern Mining

Sequential pattern mining (SPM) is an important technique of pattern mining, which has many applications in reality. Although many efficient sequential pattern mining algorithms have been proposed, there are few studies can focus on target sequences. Targeted querying sequential patterns can not only reduce the number of sequences generated by SPM, but also improve the efficiency of users in performing pattern analysis. The current algorithms available on targeted sequence querying are based on specific scenarios and cannot be generalized to other applications. In this paper, we formulate the problem of targeted sequential pattern mining and propose a generic framework namely TaSPM, based on the fast CM-SPAM algorithm. What's more, to improve the efficiency of TaSPM on large-scale datasets and multiple-items-based sequence datasets, we propose several pruning strategies to reduce meaningless operations in mining processes. Totally four pruning strategies are designed in TaSPM, and hence it can terminate unnecessary pattern extensions quickly and achieve better performance. Finally, we conduct extensive experiments on different datasets to compare the existing SPM algorithms with TaSPM. Experiments show that the novel targeted mining algorithm TaSPM can achieve faster running time and less memory consumption.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Temporal Fuzzy Utility Maximization with Remaining Measure

High utility itemset mining approaches discover hidden patterns from large amounts of temporal data. However, an inescapable problem of high utility itemset mining is that its discovered results hide the quantities of patterns, which causes poor interpretability. The results only reflect the shopping trends of customers, which cannot help decision makers quantify collected information. In linguistic terms, computers use mathematical or programming languages that are precisely formalized, but the language used by humans is always ambiguous. In this paper, we propose a novel one-phase temporal fuzzy utility itemset mining approach called TFUM. It revises temporal fuzzy-lists to maintain less but major information about potential high temporal fuzzy utility itemsets in memory, and then discovers a complete set of real interesting patterns in a short time. In particular, the remaining measure is the first adopted in the temporal fuzzy utility itemset mining domain in this paper. The remaining maximal temporal fuzzy utility is a tighter and stronger upper bound than that of previous studies adopted. Hence, it plays an important role in pruning the search space in TFUM. Finally, we also evaluate the efficiency and effectiveness of TFUM on various datasets. Extensive experimental results indicate that TFUM outperforms the state-of-the-art algorithms in terms of runtime cost, memory usage, and scalability. In addition, experiments prove that the remaining measure can significantly prune unnecessary candidates during mining.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Towards Revenue Maximization with Popular and Profitable Products

Economic-wise, a common goal for companies conducting marketing is to maximize the return revenue/profit by utilizing the various effective marketing strategies. Consumer behavior is crucially important in economy and targeted marketing, in which behavioral economics can provide valuable insights to identify the biases and profit from customers. Finding credible and reliable information on products' profitability is, however, quite difficult since most products tends to peak at certain times w.r.t. seasonal sales cycle in a year. On-Shelf Availability (OSA) plays a key factor for performance evaluation. Besides, staying ahead of hot product trends means we can increase marketing efforts without selling out the inventory. To fulfill this gap, in this paper, we first propose a general profit-oriented framework to address the problem of revenue maximization based on economic behavior, and compute the 0n-shelf Popular and most Profitable Products (OPPPs) for the targeted marketing. To tackle the revenue maximization problem, we model the k-satisfiable product concept and propose an algorithmic framework for searching OPPP and its variants. Extensive experiments are conducted on several real-world datasets to evaluate the effectiveness and efficiency of the proposed algorithm.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Towards Target Sequential Rules

In many real-world applications, sequential rule mining (SRM) can provide prediction and recommendation functions for a variety of services. It is an important technique of pattern mining to discover all valuable rules that belong to high-frequency and high-confidence sequential rules. Although several algorithms of SRM are proposed to solve various practical problems, there are no studies on target sequential rules. Targeted sequential rule mining aims at mining the interesting sequential rules that users focus on, thus avoiding the generation of other invalid and unnecessary rules. This approach can further improve the efficiency of users in analyzing rules and reduce the consumption of data resources. In this paper, we provide the relevant definitions of target sequential rule and formulate the problem of targeted sequential rule mining. Furthermore, we propose an efficient algorithm, called targeted sequential rule mining (TaSRM). Several pruning strategies and an optimization are introduced to improve the efficiency of TaSRM. Finally, a large number of experiments are conducted on different benchmarks, and we analyze the results in terms of their running time, memory consumption, and scalability, as well as query cases with different query rules. It is shown that the novel algorithm TaSRM and its variants can achieve better experimental performance compared to the existing baseline algorithm.

0 citations0 reviewsNo code linkedOpen access