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Weihao Gao

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Published work

6 published item(s)

preprint2026arXiv

Agentic Discovery of Exchange-Correlation Density Functionals

The development of accurate exchange-correlation (XC) functionals remains a longstanding challenge in density functional theory (DFT). The vast majority of XC functionals have been hand designed by human researchers combining physical insight, exact constraints, and empirical fitting. Recent advances in large language models enable a systematic, automated alternative to this human-driven design loop. This report presents an agentic search system in which an LLM proposes structured functional-form changes guided by evolutionary history. The system attempts to improve functional performance through an iterative plan-execute-summarize loop, where improvements are measurable by optimizing functional parameters against a standard thermochemistry dataset, then evaluating performance on a held-out subset. The strongest discovered functional, SAFS26-a (Seed Agentic Functional Search 2026), improves upon the gold-standard ωB97M-V baseline by ~9%. These results also surface a cautionary lesson for AI-assisted science: models powerful enough to discover genuine improvements are equally capable of exploiting unphysical shortcuts to game the benchmark; domain expertise translated into explicitly enforced constraints remains essential to keeping results scientifically grounded.

preprint2022arXiv

Label Leakage and Protection in Two-party Split Learning

Two-party split learning is a popular technique for learning a model across feature-partitioned data. In this work, we explore whether it is possible for one party to steal the private label information from the other party during split training, and whether there are methods that can protect against such attacks. Specifically, we first formulate a realistic threat model and propose a privacy loss metric to quantify label leakage in split learning. We then show that there exist two simple yet effective methods within the threat model that can allow one party to accurately recover private ground-truth labels owned by the other party. To combat these attacks, we propose several random perturbation techniques, including $\texttt{Marvell}$, an approach that strategically finds the structure of the noise perturbation by minimizing the amount of label leakage (measured through our quantification metric) of a worst-case adversary. We empirically demonstrate the effectiveness of our protection techniques against the identified attacks, and show that $\texttt{Marvell}$ in particular has improved privacy-utility tradeoffs relative to baseline approaches.

preprint2022arXiv

Learning to Simulate Unseen Physical Systems with Graph Neural Networks

Simulation of the dynamics of physical systems is essential to the development of both science and engineering. Recently there is an increasing interest in learning to simulate the dynamics of physical systems using neural networks. However, existing approaches fail to generalize to physical substances not in the training set, such as liquids with different viscosities or elastomers with different elasticities. Here we present a machine learning method embedded with physical priors and material parameters, which we term as "Graph-based Physics Engine" (GPE), to efficiently model the physical dynamics of different substances in a wide variety of scenarios. We demonstrate that GPE can generalize to materials with different properties not seen in the training set and perform well from single-step predictions to multi-step roll-out simulations. In addition, introducing the law of momentum conservation in the model significantly improves the efficiency and stability of learning, allowing convergence to better models with fewer training steps.

preprint2016arXiv

Breaking the Bandwidth Barrier: Geometrical Adaptive Entropy Estimation

Estimators of information theoretic measures such as entropy and mutual information are a basic workhorse for many downstream applications in modern data science. State of the art approaches have been either geometric (nearest neighbor (NN) based) or kernel based (with a globally chosen bandwidth). In this paper, we combine both these approaches to design new estimators of entropy and mutual information that outperform state of the art methods. Our estimator uses local bandwidth choices of $k$-NN distances with a finite $k$, independent of the sample size. Such a local and data dependent choice improves performance in practice, but the bandwidth is vanishing at a fast rate, leading to a non-vanishing bias. We show that the asymptotic bias of the proposed estimator is universal; it is independent of the underlying distribution. Hence, it can be pre-computed and subtracted from the estimate. As a byproduct, we obtain a unified way of obtaining both kernel and NN estimators. The corresponding theoretical contribution relating the asymptotic geometry of nearest neighbors to order statistics is of independent mathematical interest.

preprint2016arXiv

Conditional Dependence via Shannon Capacity: Axioms, Estimators and Applications

We conduct an axiomatic study of the problem of estimating the strength of a known causal relationship between a pair of variables. We propose that an estimate of causal strength should be based on the conditional distribution of the effect given the cause (and not on the driving distribution of the cause), and study dependence measures on conditional distributions. Shannon capacity, appropriately regularized, emerges as a natural measure under these axioms. We examine the problem of calculating Shannon capacity from the observed samples and propose a novel fixed-$k$ nearest neighbor estimator, and demonstrate its consistency. Finally, we demonstrate an application to single-cell flow-cytometry, where the proposed estimators significantly reduce sample complexity.

preprint2016arXiv

Demystifying Fixed k-Nearest Neighbor Information Estimators

Estimating mutual information from i.i.d. samples drawn from an unknown joint density function is a basic statistical problem of broad interest with multitudinous applications. The most popular estimator is one proposed by Kraskov and Stögbauer and Grassberger (KSG) in 2004, and is nonparametric and based on the distances of each sample to its $k^{\rm th}$ nearest neighboring sample, where $k$ is a fixed small integer. Despite its widespread use (part of scientific software packages), theoretical properties of this estimator have been largely unexplored. In this paper we demonstrate that the estimator is consistent and also identify an upper bound on the rate of convergence of the bias as a function of number of samples. We argue that the superior performance benefits of the KSG estimator stems from a curious "correlation boosting" effect and build on this intuition to modify the KSG estimator in novel ways to construct a superior estimator. As a byproduct of our investigations, we obtain nearly tight rates of convergence of the $\ell_2$ error of the well known fixed $k$ nearest neighbor estimator of differential entropy by Kozachenko and Leonenko.