Researcher profile

Varun Shankar

Varun Shankar contributes to research discovery and scholarly infrastructure.

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Published work

5 published item(s)

preprint2026arXiv

Neural Operators for Design-Space Surrogate Modeling of Tendon-Actuated Continuum Robots

Continuum robots enable dexterous manipulation in constrained environments, but require accurate and efficient models for real-time manipulation and control. Traditional physics-based models can be computationally expensive and may suffer from inaccuracies due to unmodeled effects, while current learning-based methods often generalize poorly beyond the specific robot on which they are trained. We present a formulation of surrogate modeling for tendon-driven continuum robots as an operator learning problem that maps robot design parameters and tendon actuation inputs to resulting configurations. This formulation enables a single trained model to generalize across a large class of robot designs. We develop four novel neural operator architectures--two based on Deep Operator Networks (DeepONets) and two based on Fourier Neural Operators (FNOs)--and train them on simulation data to predict robot configurations. All architectures achieve good accuracy while allowing for fast and accurate generalization across designs. Our results demonstrate that operator learning provides an effective and generalizable surrogate for continuum robot mechanics in the design space, enabling fast modeling for control, planning, and design optimization in surgical and industrial applications.

preprint2022arXiv

MGM: A meshfree geometric multilevel method for systems arising from elliptic equations on point cloud surfaces

We develop a new meshfree geometric multilevel (MGM) method for solving linear systems that arise from discretizing elliptic PDEs on surfaces represented by point clouds. The method uses a Poisson disk sampling-type technique for coarsening the point clouds and new meshfree restriction/interpolation operators based on polyharmonic splines for transferring information between the coarsened point clouds. These are then combined with standard smoothing and operator coarsening methods in a V-cycle iteration. MGM is applicable to discretizations of elliptic PDEs based on various localized meshfree methods, including RBF finite differences (RBF-FD) and generalized finite differences (GFD). We test MGM both as a standalone solver and preconditioner for Krylov subspace methods on several test problems using RBF-FD and GFD, and numerically analyze convergence rates, efficiency, and scaling with increasing point cloud sizes. We also perform a side-by-side comparison to algebraic multigrid (AMG) methods for solving the same systems. Finally, we further demonstrate the effectiveness of MGM by applying it to three challenging applications on complicated surfaces: pattern formation, surface harmonics, and geodesic distance.

preprint2021arXiv

Immersed boundary simulations of cell-cell interactions in whole blood

We present a new method for the geometric reconstruction of elastic surfaces simulated by the immersed boundary method with the goal of simulating the motion and interactions of cells in whole blood. Our method uses parameter-free radial basis functions for high-order meshless parametric reconstruction of point clouds and the elastic force computations required by the immersed boundary method. This numerical framework allows us to consider the effect of endothelial geometry and red blood cell motion on the motion of platelets. We find red blood cells to be crucial for understanding the motion of platelets, to the point that the geometry of the vessel wall has a negligible effect in the presence of RBCs. We describe certain interactions that force the platelets to remain near the endothelium for extended periods, including a novel platelet motion that can be seen only in 3-dimensional simulations that we term "unicycling." We also observe red blood cell-mediated interactions between platelets and the endothelium for which the platelet has reduced speed. We suggest that these behaviors serve as mechanisms that allow platelets to better maintain vascular integrity.

preprint2020arXiv

A Robust Hyperviscosity Formulation for Stable RBF-FD Discretizations of Advection-Diffusion-Reaction Equations on Manifolds

We present a new hyperviscosity formulation for stabilizing radial basis function-finite difference (RBF-FD) discretizations of advection-diffusion-reaction equations on manifolds $\mathbb{M} \subset \mathbb{R}^3$ of co-dimension one. Our technique involves automatic addition of artificial hyperviscosity to damp out spurious modes in the differentiation matrices corresponding to surface gradients, in the process overcoming a technical limitation of a recently-developed Euclidean formulation. Like the Euclidean formulation, the manifold formulation relies on von Neumann stability analysis performed on auxiliary differential operators that mimic the spurious solution growth induced by RBF-FD differentiation matrices. We demonstrate high-order convergence rates on problems involving surface advection and surface advection-diffusion. Finally, we demonstrate the applicability of our formulation to advection-diffusion-reaction equations on manifolds described purely as point clouds. Our surface discretizations use the recently-developed RBF-LOI method, and with the addition of hyperviscosity, are now empirically high-order accurate, stable, and free of stagnation errors.

preprint2020arXiv

Asymptotic and numerical analysis of a stochastic PDE model of volume transmission

Volume transmission is an important neural communication pathway in which neurons in one brain region influence the neurotransmitter concentration in the extracellular space of a distant brain region. In this paper, we apply asymptotic analysis to a stochastic partial differential equation model of volume transmission to calculate the neurotransmitter concentration in the extracellular space. Our model involves the diffusion equation in a three-dimensional domain with interior holes that randomly switch between being either sources or sinks. These holes model nerve varicosities that alternate between releasing and absorbing neurotransmitter, according to when they fire action potentials. In the case that the holes are small, we compute analytically the first two nonzero terms in an asymptotic expansion of the average neurotransmitter concentration. The first term shows that the concentration is spatially constant to leading order and that this constant is independent of many details in the problem. Specifically, this constant first term is independent of the number and location of nerve varicosities, neural firing correlations, and the size and geometry of the extracellular space. The second term shows how these factors affect the concentration at second order. Interestingly, the second term is also spatially constant under some mild assumptions. We verify our asymptotic results by high-order numerical simulation using radial basis function-generated finite differences.