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Researcher profile

Somdatta Goswami

Somdatta Goswami contributes to research discovery and scholarly infrastructure.

ResearcherAffiliation not importedOpen to collaborate
Machine Learningmath.NANumerical Analysismath.APphysics.comp-phArtificial IntelligenceComputation and LanguageComputational Engineering, Finance, and Sciencecond-mat.mtrl-sciphysics.gen-phSoftware EngineeringTissues and Organs

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Published work

9 published item(s)

preprint2026arXiv

Can Coding Agents Reproduce Findings in Computational Materials Science?

Large language models are increasingly deployed as autonomous coding agents and have achieved remarkably strong performance on software engineering benchmarks. However, it is unclear whether such success transfers to computational scientific workflows, where tasks require not only strong coding ability, but also the ability to navigate complex, domain-specific procedures and to interpret results in the context of scientific claims. To address this question, we present AutoMat, a benchmark for evaluating LLM-based agents' ability to reproduce claims from computational materials science. AutoMat poses three interrelated challenges: recovering underspecified computational procedures, navigating specialized toolchains, and determining whether the resulting evidence supports a claim. By working closely with subject matter experts, we curate a set of claims from real materials science papers to test whether coding agents can recover and execute the end-to-end workflow needed to support (or undermine) such claims. We then evaluate multiple representative coding agent settings across several foundation models. Our results show that current LLM-based agents obtain low overall success rates on AutoMat, with the best-performing setting achieving a success rate of only 54.1%. Error analysis further reveals that agents perform worst when workflows must be reconstructed from paper text alone and that they fail primarily due to incomplete procedures, methodological deviations, and execution fragility. Taken together, these findings position AutoMat as both a benchmark for computational scientific reproducibility and a tool for diagnosing the current limitations of agentic systems in AI-for-science settings.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Learning two-phase microstructure evolution using neural operators and autoencoder architectures

Phase-field modeling is an effective but computationally expensive method for capturing the mesoscale morphological and microstructure evolution in materials. Hence, fast and generalizable surrogate models are needed to alleviate the cost of computationally taxing processes such as in optimization and design of materials. The intrinsic discontinuous nature of the physical phenomena incurred by the presence of sharp phase boundaries makes the training of the surrogate model cumbersome. We develop a framework that integrates a convolutional autoencoder architecture with a deep neural operator (DeepONet) to learn the dynamic evolution of a two-phase mixture and accelerate time-to-solution in predicting the microstructure evolution. We utilize the convolutional autoencoder to provide a compact representation of the microstructure data in a low-dimensional latent space. DeepONet, which consists of two sub-networks, one for encoding the input function at a fixed number of sensors locations (branch net) and another for encoding the locations for the output functions (trunk net), learns the mesoscale dynamics of the microstructure evolution from the autoencoder latent space. The decoder part of the convolutional autoencoder then reconstructs the time-evolved microstructure from the DeepONet predictions. The trained DeepONet architecture can then be used to replace the high-fidelity phase-field numerical solver in interpolation tasks or to accelerate the numerical solver in extrapolation tasks.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Neural operator learning of heterogeneous mechanobiological insults contributing to aortic aneurysms

Thoracic aortic aneurysm (TAA) is a localized dilatation of the aorta resulting from compromised wall composition, structure, and function, which can lead to life-threatening dissection or rupture. Several genetic mutations and predisposing factors that contribute to TAA have been studied in mouse models to characterize specific changes in aortic microstructure and material properties that result from a wide range of mechanobiological insults. Assessments of TAA progression in vivo is largely limited to measurements of aneurysm size and growth rate. It has been shown that aortic geometry alone is not sufficient to predict the patient-specific progression of TAA but computational modeling of the evolving biomechanics of the aorta could predict future geometry and properties from initiating insults. In this work, we present an integrated framework to train a deep operator network (DeepONet)-based surrogate model to identify contributing factors for TAA by using FE-based datasets of aortic growth and remodeling resulting from prescribed insults. For training data, we investigate multiple types of TAA risk factors and spatial distributions within a constrained mixture model to generate axial--azimuthal maps of aortic dilatation and distensibility. The trained network is then capable of predicting the initial distribution and extent of the insult from a given set of dilatation and distensibility information. Two DeepONet frameworks are proposed, one trained on sparse information and one on full-field grayscale images, to gain insight into a preferred neural operator-based approach. Performance of the surrogate models is evaluated through multiple simulations carried out on insult distributions varying from fusiform to complex. We show that the proposed approach can predict patient-specific mechanobiological insult profile with a high accuracy, particularly when based on full-field images.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Physics-Informed Deep Neural Operator Networks

Standard neural networks can approximate general nonlinear operators, represented either explicitly by a combination of mathematical operators, e.g., in an advection-diffusion-reaction partial differential equation, or simply as a black box, e.g., a system-of-systems. The first neural operator was the Deep Operator Network (DeepONet), proposed in 2019 based on rigorous approximation theory. Since then, a few other less general operators have been published, e.g., based on graph neural networks or Fourier transforms. For black box systems, training of neural operators is data-driven only but if the governing equations are known they can be incorporated into the loss function during training to develop physics-informed neural operators. Neural operators can be used as surrogates in design problems, uncertainty quantification, autonomous systems, and almost in any application requiring real-time inference. Moreover, independently pre-trained DeepONets can be used as components of a complex multi-physics system by coupling them together with relatively light training. Here, we present a review of DeepONet, the Fourier neural operator, and the graph neural operator, as well as appropriate extensions with feature expansions, and highlight their usefulness in diverse applications in computational mechanics, including porous media, fluid mechanics, and solid mechanics.

0 citations0 reviewsNo code linkedOpen access
preprint2022arXiv

Variational energy based XPINNs for phase field analysis in brittle fracture

Modeling fracture is computationally expensive even in computational simulations of two-dimensional problems. Hence, scaling up the available approaches to be directly applied to large components or systems crucial for real applications become challenging. In this work. we propose domain decomposition framework for the variational physics-informed neural networks to accurately approximate the crack path defined using the phase field approach. We show that coupling domain decomposition and adaptive refinement schemes permits to focus the numerical effort where it is most needed: around the zones where crack propagates. No a priori knowledge of the damage pattern is required. The ability to use numerous deep or shallow neural networks in the smaller subdomains gives the proposed method the ability to be parallelized. Additionally, the framework is integrated with adaptive non-linear activation functions which enhance the learning ability of the networks, and results in faster convergence. The efficiency of the proposed approach is demonstrated numerically with three examples relevant to engineering fracture mechanics. Upon the acceptance of the manuscript, all the codes associated with the manuscript will be made available on Github.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A comprehensive and fair comparison of two neural operators (with practical extensions) based on FAIR data

Neural operators can learn nonlinear mappings between function spaces and offer a new simulation paradigm for real-time prediction of complex dynamics for realistic diverse applications as well as for system identification in science and engineering. Herein, we investigate the performance of two neural operators, and we develop new practical extensions that will make them more accurate and robust and importantly more suitable for industrial-complexity applications. The first neural operator, DeepONet, was published in 2019, and the second one, named Fourier Neural Operator or FNO, was published in 2020. In order to compare FNO with DeepONet for realistic setups, we develop several extensions of FNO that can deal with complex geometric domains as well as mappings where the input and output function spaces are of different dimensions. We also endow DeepONet with special features that provide inductive bias and accelerate training, and we present a faster implementation of DeepONet with cost comparable to the computational cost of FNO. We consider 16 different benchmarks to demonstrate the relative performance of the two neural operators, including instability wave analysis in hypersonic boundary layers, prediction of the vorticity field of a flapping airfoil, porous media simulations in complex-geometry domains, etc. The performance of DeepONet and FNO is comparable for relatively simple settings, but for complex geometries and especially noisy data, the performance of FNO deteriorates greatly. For example, for the instability wave analysis with only 0.1% noise added to the input data, the error of FNO increases 10000 times making it inappropriate for such important applications, while there is hardly any effect of such noise on the DeepONet. We also compare theoretically the two neural operators and obtain similar error estimates for DeepONet and FNO under the same regularity assumptions.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A physics-informed variational DeepONet for predicting the crack path in brittle materials

Failure trajectories, identifying the probable failure zones, and damage statistics are some of the key quantities of relevance in brittle fracture applications. High-fidelity numerical solvers that reliably estimate these relevant quantities exist but they are computationally demanding requiring a high resolution of the crack. Moreover, independent intensive simulations need to be carried out even for a small change in domain parameters and/or material properties. Therefore, fast and generalizable surrogate models are needed to alleviate the computational burden but the discontinuous nature of fracture mechanics presents a major challenge to developing such models. We propose a physics-informed variational formulation of DeepONet (V-DeepONet) for brittle fracture analysis. V-DeepONet is trained to map the initial configuration of the defect to the relevant fields of interests (e.g., damage and displacement fields). Once the network is trained, the entire global solution can be rapidly obtained for any initial crack configuration and loading steps on that domain. While the original DeepONet is solely data-driven, we take a different path to train the V-DeepONet by imposing the governing equations in variational form and we also use some labelled data. We demonstrate the effectiveness of V-DeepOnet through two benchmarks of brittle fracture, and we verify its accuracy using results from high-fidelity solvers. Encoding the physical laws and also some data to train the network renders the surrogate model capable of accurately performing both interpolation and extrapolation tasks, considering that fracture modeling is very sensitive to fluctuations. The proposed hybrid training of V-DeepONet is superior to state-of-the-art methods and can be applied to a wide array of dynamical systems with complex responses.

0 citations0 reviewsNo code linkedOpen access
preprint2021arXiv

A robust monolithic solver for phase-field fracture integrated with fracture energy based arc-length method and under-relaxation

The phase-field fracture free-energy functional is non-convex with respect to the displacement and the phase field. This results in a poor performance of the conventional monolithic solvers like the Newton-Raphson method. In order to circumvent this issue, researchers opt for the alternate minimization (staggered) solvers. Staggered solvers are robust for the phase-field based fracture simulations as the displacement and the phase-field sub-problems are convex in nature. Nevertheless, the staggered solver requires very large number of iterations (of the order of thousands) to converge. In this work, a robust monolithic solver is presented for the phase-field fracture problem. The solver adopts a fracture energy-based arc-length method and an adaptive under-relaxation scheme. The arc-length method enables the simulation to overcome critical points (snap-back, snap-through instabilities) during the loading of a specimen. The use of an under-relaxation scheme stabilizes the solver by preventing the divergence due to an ill-behaving stiffness matrix. The efficiency of the proposed solver is further amplified with an adaptive mesh refinement scheme based on PHT-splines within the framework of isogeometric analysis. The numerical examples presented in the manuscript demonstrates the efficacy of the solver. All the codes and data-sets accompanying this work will be made available on GitHub (https://github.com/rbharali/IGAFrac).

0 citations0 reviewsNo code linkedOpen access
preprint2019arXiv

An Energy Approach to the Solution of Partial Differential Equations in Computational Mechanics via Machine Learning: Concepts, Implementation and Applications

Partial Differential Equations (PDE) are fundamental to model different phenomena in science and engineering mathematically. Solving them is a crucial step towards a precise knowledge of the behaviour of natural and engineered systems. In general, in order to solve PDEs that represent real systems to an acceptable degree, analytical methods are usually not enough. One has to resort to discretization methods. For engineering problems, probably the best known option is the finite element method (FEM). However, powerful alternatives such as mesh-free methods and Isogeometric Analysis (IGA) are also available. The fundamental idea is to approximate the solution of the PDE by means of functions specifically built to have some desirable properties. In this contribution, we explore Deep Neural Networks (DNNs) as an option for approximation. They have shown impressive results in areas such as visual recognition. DNNs are regarded here as function approximation machines. There is great flexibility to define their structure and important advances in the architecture and the efficiency of the algorithms to implement them make DNNs a very interesting alternative to approximate the solution of a PDE. We concentrate in applications that have an interest for Computational Mechanics. Most contributions that have decided to explore this possibility have adopted a collocation strategy. In this contribution, we concentrate in mechanical problems and analyze the energetic format of the PDE. The energy of a mechanical system seems to be the natural loss function for a machine learning method to approach a mechanical problem. As proofs of concept, we deal with several problems and explore the capabilities of the method for applications in engineering.

0 citations0 reviewsNo code linkedOpen access