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Siyi Liu

Siyi Liu contributes to research discovery and scholarly infrastructure.

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Published work

8 published item(s)

preprint2026arXiv

Graphs of Research: Citation Evolution Graphs as Supervision for Research Idea Generation

Research idea generation is the innovation-driving step of automated scientific research. Recently, large language models (LLMs) have shown potential for automating idea generation at scale. However, existing methods mainly condition LLMs on eliciting idea generation through static retrieval of relevant literature or complex prompt engineering, without discarding the structural relations among references. We propose Graphs of Research (GoR), a supervised fine-tuning method that extracts a 2-hop reference neighborhood for each seed paper, derives the relations among those references from citation position, frequency, predecessor links, and publication time, and organizes them into a paper-evolution directed acyclic graph (DAG). We construct an automated extraction pipeline that draws data from five major ML/NLP venues, comprising 498/50/50 train/validation/test seed papers and approximately 7,600 cited references. Qwen2.5-7B-Instruct-1M is fine-tuned on a structured-text prompt that includes the citation graph, edge signals, reference information, and task definition to predict the idea for the seed paper. Across head-to-head LLM-judge tournaments against gpt-4o-driven baselines, GoR-SFT achieves SOTA, demonstrating the effectiveness of citation-evolution graphs as supervision signal for LLM-based idea generation. We hope that this reduces the barrier for citation evolution graphs as a supervision, accelerating automated scientific innovation.

preprint2022arXiv

Creating Multimedia Summaries Using Tweets and Videos

While popular televised events such as presidential debates or TV shows are airing, people provide commentary on them in real-time. In this paper, we propose a simple yet effective approach to combine social media commentary and videos to create a multimedia summary of televised events. Our approach identifies scenes from these events based on spikes of mentions of people involved in the event and automatically selects tweets and frames from the videos that occur during the time period of the spike that talk about and show the people being discussed.

preprint2022arXiv

Design Challenges for a Multi-Perspective Search Engine

Many users turn to document retrieval systems (e.g. search engines) to seek answers to controversial questions. Answering such user queries usually require identifying responses within web documents, and aggregating the responses based on their different perspectives. Classical document retrieval systems fall short at delivering a set of direct and diverse responses to the users. Naturally, identifying such responses within a document is a natural language understanding task. In this paper, we examine the challenges of synthesizing such language understanding objectives with document retrieval, and study a new perspective-oriented document retrieval paradigm. We discuss and assess the inherent natural language understanding challenges in order to achieve the goal. Following the design challenges and principles, we demonstrate and evaluate a practical prototype pipeline system. We use the prototype system to conduct a user survey in order to assess the utility of our paradigm, as well as understanding the user information needs for controversial queries.

preprint2022arXiv

Robust analyses for longitudinal clinical trials with missing and non-normal continuous outcomes

Missing data is unavoidable in longitudinal clinical trials, and outcomes are not always normally distributed. In the presence of outliers or heavy-tailed distributions, the conventional multiple imputation with the mixed model with repeated measures analysis of the average treatment effect (ATE) based on the multivariate normal assumption may produce bias and power loss. Control-based imputation (CBI) is an approach for evaluating the treatment effect under the assumption that participants in both the test and control groups with missing outcome data have a similar outcome profile as those with an identical history in the control group. We develop a general robust framework to handle non-normal outcomes under CBI without imposing any parametric modeling assumptions. Under the proposed framework, sequential weighted robust regressions are applied to protect the constructed imputation model against non-normality in both the covariates and the response variables. Accompanied by the subsequent mean imputation and robust model analysis, the resulting ATE estimator has good theoretical properties in terms of consistency and asymptotic normality. Moreover, our proposed method guarantees the analysis model robustness of the ATE estimation, in the sense that its asymptotic results remain intact even when the analysis model is misspecified. The superiority of the proposed robust method is demonstrated by comprehensive simulation studies and an AIDS clinical trial data application.

preprint2022arXiv

Sensitivity analysis in longitudinal clinical trials via distributional imputation

Missing data is inevitable in longitudinal clinical trials. Conventionally, the missing at random assumption is assumed to handle missingness, which however is unverifiable empirically. Thus, sensitivity analysis is critically important to assess the robustness of the study conclusions against untestable assumptions. Toward this end, regulatory agencies often request using imputation models such as return-to-baseline, control-based, and washout imputation. Multiple imputation is popular in sensitivity analysis; however, it may be inefficient and result in an unsatisfying interval estimation by Rubin's combining rule. We propose distributional imputation (DI) in sensitivity analysis, which imputes each missing value by samples from its target imputation model given the observed data. Drawn on the idea of Monte Carlo integration, the DI estimator solves the mean estimating equations of the imputed dataset. It is fully efficient with theoretical guarantees. Moreover, we propose weighted bootstrap to obtain a consistent variance estimator, taking into account the variabilities due to model parameter estimation and target parameter estimation. The finite-sample performance of DI inference is assessed in the simulation study. We apply the proposed framework to an antidepressant longitudinal clinical trial involving missing data to investigate the robustness of the treatment effect. Our proposed DI approach detects a statistically significant treatment effect in both the primary analysis and sensitivity analysis under certain prespecified sensitivity models in terms of the average treatment effect, the risk difference, and the quantile treatment effect in lower quantiles of the responses, uncovering the benefit of the test drug for curing depression.

preprint2020arXiv

DGTN: Dual-channel Graph Transition Network for Session-based Recommendation

The task of session-based recommendation is to predict user actions based on anonymous sessions. Recent research mainly models the target session as a sequence or a graph to capture item transitions within it, ignoring complex transitions between items in different sessions that have been generated by other users. These item transitions include potential collaborative information and reflect similar behavior patterns, which we assume may help with the recommendation for the target session. In this paper, we propose a novel method, namely Dual-channel Graph Transition Network (DGTN), to model item transitions within not only the target session but also the neighbor sessions. Specifically, we integrate the target session and its neighbor (similar) sessions into a single graph. Then the transition signals are explicitly injected into the embedding by channel-aware propagation. Experiments on real-world datasets demonstrate that DGTN outperforms other state-of-the-art methods. Further analysis verifies the rationality of dual-channel item transition modeling, suggesting a potential future direction for session-based recommendation.

preprint2020arXiv

Learning to mirror speaking styles incrementally

Mirroring is the behavior in which one person subconsciously imitates the gesture, speech pattern, or attitude of another. In conversations, mirroring often signals the speakers enjoyment and engagement in their communication. In chatbots, methods have been proposed to add personas to the chatbots and to train them to speak or to shift their dialogue style to that of the personas. However, they often require a large dataset consisting of dialogues of the target personalities to train. In this work, we explore a method that can learn to mirror the speaking styles of a person incrementally. Our method extracts ngrams that capture a persons speaking styles and uses the ngrams to create patterns for transforming sentences to the persons speaking styles. Our experiments show that our method is able to capture patterns of speaking style that can be used to transform regular sentences into sentences with the target style.

preprint2020arXiv

Long-tail Session-based Recommendation

Session-based recommendation focuses on the prediction of user actions based on anonymous sessions and is a necessary method in the lack of user historical data. However, none of the existing session-based recommendation methods explicitly takes the long-tail recommendation into consideration, which plays an important role in improving the diversity of recommendation and producing the serendipity. As the distribution of items with long-tail is prevalent in session-based recommendation scenarios (e.g., e-commerce, music, and TV program recommendations), more attention should be put on the long-tail session-based recommendation. In this paper, we propose a novel network architecture, namely TailNet, to improve long-tail recommendation performance, while maintaining competitive accuracy performance compared with other methods. We start by classifying items into short-head (popular) and long-tail (niche) items based on click frequency. Then a novel is proposed and applied in TailNet to determine user preference between two types of items, so as to softly adjust and personalize recommendations. Extensive experiments on two real-world datasets verify the superiority of our method compared with state-of-the-art works.