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Raquel Aoki

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Published work

4 published item(s)

preprint2026arXiv

Causal EpiNets: Precision-corrected Bounds on Individual Treatment Effects using Epistemic Neural Networks

Individual treatment effects are not point-identified from data. The Probability of Necessity and Sufficiency (PNS) circumvents this limitation by characterizing individual-level causality through intersection bounds derived from combined experimental and observational data. In finite samples, however, standard plug-in estimators systematically fail: they violate structural probability constraints and suffer from extremum bias induced by max-min operators, yielding spuriously narrow intervals. We propose a neural framework for finite-sample PNS estimation that resolves both pathologies. We introduce an anchored neural architecture that guarantees structural constraint satisfaction by construction. To correct extremum bias, we employ precision-corrected intersection-bound inference, leveraging Epistemic Neural Networks for scalable, high-dimensional uncertainty quantification. Empirical evaluations confirm that this approach maintains nominal coverage and exact constraint validity in high-dimensional regimes where standard estimators systematically undercover.

preprint2023arXiv

Multi-treatment Effect Estimation from Biomedical Data

This work proposes the M3E2, a multi-task learning neural network model to estimate the effect of multiple treatments. In contrast to existing methods, M3E2 can handle multiple treatment effects applied simultaneously to the same unit, continuous and binary treatments, and many covariates. We compared M3E2 with three baselines in three synthetic benchmark datasets: two with multiple treatments and one with one treatment. Our analysis showed that our method has superior performance, making more assertive estimations of the multiple treatment effects.

preprint2022arXiv

Causal Inference from Small High-dimensional Datasets

Many methods have been proposed to estimate treatment effects with observational data. Often, the choice of the method considers the application's characteristics, such as type of treatment and outcome, confounding effect, and the complexity of the data. These methods implicitly assume that the sample size is large enough to train such models, especially the neural network-based estimators. What if this is not the case? In this work, we propose Causal-Batle, a methodology to estimate treatment effects in small high-dimensional datasets in the presence of another high-dimensional dataset in the same feature space. We adopt an approach that brings transfer learning techniques into causal inference. Our experiments show that such an approach helps to bring stability to neural network-based methods and improve the treatment effect estimates in small high-dimensional datasets.

preprint2022arXiv

Heterogeneous Multi-task Learning with Expert Diversity

Predicting multiple heterogeneous biological and medical targets is a challenge for traditional deep learning models. In contrast to single-task learning, in which a separate model is trained for each target, multi-task learning (MTL) optimizes a single model to predict multiple related targets simultaneously. To address this challenge, we propose the Multi-gate Mixture-of-Experts with Exclusivity (MMoEEx). Our work aims to tackle the heterogeneous MTL setting, in which the same model optimizes multiple tasks with different characteristics. Such a scenario can overwhelm current MTL approaches due to the challenges in balancing shared and task-specific representations and the need to optimize tasks with competing optimization paths. Our method makes two key contributions: first, we introduce an approach to induce more diversity among experts, thus creating representations more suitable for highly imbalanced and heterogenous MTL learning; second, we adopt a two-step optimization [6, 11] approach to balancing the tasks at the gradient level. We validate our method on three MTL benchmark datasets, including Medical Information Mart for Intensive Care (MIMIC-III) and PubChem BioAssay (PCBA).