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Ran Zhou

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Published work

27 published item(s)

preprint2026arXiv

Masked Generative Transformer Is What You Need for Image Editing

Diffusion models dominate image editing, yet their global denoising mechanism entangles edited regions with surrounding context, causing modifications to propagate into areas that should remain intact. We propose a fundamentally different approach by leveraging Masked Generative Transformers (MGTs), whose localized token-prediction paradigm naturally confines changes to intended regions. We present EditMGT, an MGT-based editing framework that is the first of its kind. Our approach employs multi-layer attention consolidation to aggregate cross-attention maps into precise edit localization signals, and region-hold sampling to explicitly prevent token flipping in non-target areas. To support training, we construct CrispEdit-2M, a 2M-sample high-resolution (>1024) editing dataset spanning seven categories. With only 960M parameters, EditMGT achieves state-of-the-art image similarity on multiple benchmarks while delivering 6x faster editing, demonstrating that MGTs offer a compelling alternative to diffusion-based editing.

preprint2022arXiv

Cultivating Visualization Literacy for Children Through Curiosity and Play

Fostering data visualization literacy (DVL) as part of childhood education could lead to a more data literate society. However, most work in DVL for children relies on a more formal educational context (i.e., a teacher-led approach) that limits children's engagement with data to classroom-based environments and, consequently, children's ability to ask questions about and explore data on topics they find personally meaningful. We explore how a curiosity-driven, child-led approach can provide more agency to children when they are authoring data visualizations. This paper explores how informal learning with crafting physicalizations through play and curiosity may foster increased literacy and engagement with data. Employing a constructionist approach, we designed a do-it-yourself toolkit made out of everyday materials (e.g., paper, cardboard, mirrors) that enables children to create, customize, and personalize three different interactive visualizations (bar, line, pie). We used the toolkit as a design probe in a series of in-person workshops with 5 children (6 to 11-year-olds) and interviews with 5 educators. Our observations reveal that the toolkit helped children creatively engage and interact with visualizations. Children with prior knowledge of data visualization reported the toolkit serving as more of an authoring tool that they envision using in their daily lives, while children with little to no experience found the toolkit as an engaging introduction to data visualization. Our study demonstrates the potential of using the constructionist approach to cultivate children's DVL through curiosity and play.

preprint2022arXiv

MELM: Data Augmentation with Masked Entity Language Modeling for Low-Resource NER

Data augmentation is an effective solution to data scarcity in low-resource scenarios. However, when applied to token-level tasks such as NER, data augmentation methods often suffer from token-label misalignment, which leads to unsatsifactory performance. In this work, we propose Masked Entity Language Modeling (MELM) as a novel data augmentation framework for low-resource NER. To alleviate the token-label misalignment issue, we explicitly inject NER labels into sentence context, and thus the fine-tuned MELM is able to predict masked entity tokens by explicitly conditioning on their labels. Thereby, MELM generates high-quality augmented data with novel entities, which provides rich entity regularity knowledge and boosts NER performance. When training data from multiple languages are available, we also integrate MELM with code-mixing for further improvement. We demonstrate the effectiveness of MELM on monolingual, cross-lingual and multilingual NER across various low-resource levels. Experimental results show that our MELM presents substantial improvement over the baseline methods.

preprint2022arXiv

MReD: A Meta-Review Dataset for Structure-Controllable Text Generation

When directly using existing text generation datasets for controllable generation, we are facing the problem of not having the domain knowledge and thus the aspects that could be controlled are limited. A typical example is when using CNN/Daily Mail dataset for controllable text summarization, there is no guided information on the emphasis of summary sentences. A more useful text generator should leverage both the input text and the control signal to guide the generation, which can only be built with a deep understanding of the domain knowledge. Motivated by this vision, our paper introduces a new text generation dataset, named MReD. Our new dataset consists of 7,089 meta-reviews and all its 45k meta-review sentences are manually annotated with one of the 9 carefully defined categories, including abstract, strength, decision, etc. We present experimental results on start-of-the-art summarization models, and propose methods for structure-controlled generation with both extractive and abstractive models using our annotated data. By exploring various settings and analyzing the model behavior with respect to the control signal, we demonstrate the challenges of our proposed task and the values of our dataset MReD. Meanwhile, MReD also allows us to have a better understanding of the meta-review domain.

preprint2016arXiv

$B\to Kl^+l^-$ decay form factors from three-flavor lattice QCD

We compute the form factors for the $B \to Kl^+l^-$ semileptonic decay process in lattice QCD using gauge-field ensembles with 2+1 flavors of sea quark, generated by the MILC Collaboration. The ensembles span lattice spacings from 0.12 to 0.045 fm and have multiple sea-quark masses to help control the chiral extrapolation. The asqtad improved staggered action is used for the light valence and sea quarks, and the clover action with the Fermilab interpretation is used for the heavy $b$ quark. We present results for the form factors $f_+(q^2)$, $f_0(q^2)$, and $f_T(q^2)$, where $q^2$ is the momentum transfer, together with a comprehensive examination of systematic errors. Lattice QCD determines the form factors for a limited range of $q^2$, and we use the model-independent $z$ expansion to cover the whole kinematically allowed range. We present our final form-factor results as coefficients of the $z$ expansion and the correlations between them, where the errors on the coefficients include statistical and all systematic uncertainties. We use this complete description of the form factors to test QCD predictions of the form factors at high and low $q^2$. We also compare a Standard-Model calculation of the branching ratio for $B \to Kl^+l^-$ with experimental data.

preprint2016arXiv

$B^0_{(s)}$-mixing matrix elements from lattice QCD for the Standard Model and beyond

We calculate---for the first time in three-flavor lattice QCD---the hadronic matrix elements of all five local operators that contribute to neutral $B^0$- and $B_s$-meson mixing in and beyond the Standard Model. We present a complete error budget for each matrix element and also provide the full set of correlations among the matrix elements. We also present the corresponding bag parameters and their correlations, as well as specific combinations of the mixing matrix elements that enter the expression for the neutral $B$-meson width difference. We obtain the most precise determination to date of the SU(3)-breaking ratio $ξ= 1.206(18)(6)$, where the second error stems from the omission of charm sea quarks, while the first encompasses all other uncertainties. The threefold reduction in total uncertainty, relative to the 2013 Flavor Lattice Averaging Group results, tightens the constraint from $B$ mixing on the Cabibbo-Kobayashi-Maskawa (CKM) unitarity triangle. Our calculation employs gauge-field ensembles generated by the MILC Collaboration with four lattice spacings and pion masses close to the physical value. We use the asqtad-improved staggered action for the light valence quarks, and the Fermilab method for the bottom quark. We use heavy-light meson chiral perturbation theory modified to include lattice-spacing effects to extrapolate the five matrix elements to the physical point. We combine our results with experimental measurements of the neutral $B$-meson oscillation frequencies to determine the CKM matrix elements $|V_{td}| = 8.00(34)(8) \times 10^{-3}$, $|V_{ts}| = 39.0(1.2)(0.4) \times 10^{-3}$, and $|V_{td}/V_{ts}| = 0.2052(31)(10)$, which differ from CKM-unitarity expectations by about 2$σ$. These results and others from flavor-changing-neutral currents point towards an emerging tension between weak processes that are mediated at the loop and tree levels.

preprint2016arXiv

Kaon semileptonic decays with $N_f=2+1+1$ HISQ fermions and physical light-quark masses

We discuss the reduction of errors in the calculation of the form factor $f_+^{K π}(0)$ with HISQ fermions on the $N_f=2+1+1$ MILC configurations from increased statistics on some key ensembles, new data on ensembles with lattice spacings down to 0.042 fm and the study of finite-volume effects within staggered ChPT. We also study the implications for the unitarity of the CKM matrix in the first row and for current tensions with leptonic determinations of $\vert V_{us}\vert$.

preprint2016arXiv

Phenomenology of semileptonic B-meson decays with form factors from lattice QCD

We study the exclusive semileptonic $B$-meson decays $B\to K(π)\ell^+\ell^-$, $B\to K(π)ν\barν$, and $B\toπτν$, computing observables in the Standard model using the recent lattice-QCD results for the underlying form factors from the Fermilab Lattice and MILC Collaborations. These processes provide theoretically clean windows into physics beyond the Standard Model because the hadronic uncertainties are now under good control for suitably binned observables. For example, the resulting partially integrated branching fractions for $B\toπμ^+μ^-$ and $B\to Kμ^+μ^-$ outside the charmonium resonance region are 1-2$σ$ higher than the LHCb Collaboration's recent measurements, where the theoretical and experimental errors are commensurate. The combined tension is 1.7$σ$. Combining the Standard-Model rates with LHCb's measurements yields values for the Cabibbo-Kobayashi-Maskawa (CKM) matrix elements $|V_{td}|=7.45{(69)}\times10^{-3}$, $|V_{ts}|=35.7(1.5)\times10^{-3}$, and $|V_{td}/V_{ts}|=0.201{(20)}$, which are compatible with the values obtained from neutral $B_{(s)}$-meson oscillations and have competitive uncertainties. Alternatively, taking the CKM matrix elements from unitarity, we constrain new-physics contributions at the electroweak scale. The constraints on the Wilson coefficients ${\rm Re}(C_9)$ and ${\rm Re}(C_{10})$ from $B\toπμ^+μ^-$ and $B\to Kμ^+μ^-$ are competitive with those from $B\to K^* μ^+μ^-$, and display a 2.0$σ$ tension with the Standard Model. Our predictions for $B\to K(π)ν\barν$ and $B\toπτν$ are close to the current experimental limits.

preprint2015arXiv

$|V_{ub}|$ from $B\toπ\ellν$ decays and (2+1)-flavor lattice QCD

We present a lattice-QCD calculation of the $B\toπ\ellν$ semileptonic form factors and a new determination of the CKM matrix element $|V_{ub}|$. We use the MILC asqtad 2+1-flavor lattice configurations at four lattice spacings and light-quark masses down to 1/20 of the physical strange-quark mass. We extrapolate the lattice form factors to the continuum using staggered chiral perturbation theory in the hard-pion and SU(2) limits. We employ a model-independent $z$ parameterization to extrapolate our lattice form factors from large-recoil momentum to the full kinematic range. We introduce a new functional method to propagate information from the chiral-continuum extrapolation to the $z$ expansion. We present our results together with a complete systematic error budget, including a covariance matrix to enable the combination of our form factors with other lattice-QCD and experimental results. To obtain $|V_{ub}|$, we simultaneously fit the experimental data for the $B\toπ\ellν$ differential decay rate obtained by the BaBar and Belle collaborations together with our lattice form-factor results. We find $|V_{ub}|=(3.72\pm 0.16)\times 10^{-3}$ where the error is from the combined fit to lattice plus experiments and includes all sources of uncertainty. Our form-factor results bring the QCD error on $|V_{ub}|$ to the same level as the experimental error. We also provide results for the $B\toπ\ellν$ vector and scalar form factors obtained from the combined lattice and experiment fit, which are more precisely-determined than from our lattice-QCD calculation alone. These results can be used in other phenomenological applications and to test other approaches to QCD.

preprint2015arXiv

$B\toπ\ell\ell$ form factors for new-physics searches from lattice QCD

The rare decay $B\toπ\ell^+\ell^-$ arises from $b\to d$ flavor-changing neutral currents and could be sensitive to physics beyond the Standard Model. Here, we present the first $ab$-$initio$ QCD calculation of the $B\toπ$ tensor form factor $f_T$. Together with the vector and scalar form factors $f_+$ and $f_0$ from our companion work [J. A. Bailey $et~al.$, Phys. Rev. D 92, 014024 (2015)], these parameterize the hadronic contribution to $B\toπ$ semileptonic decays in any extension of the Standard Model. We obtain the total branching ratio ${\text{BR}}(B^+\toπ^+μ^+μ^-)=20.4(2.1)\times10^{-9}$ in the Standard Model, which is the most precise theoretical determination to date, and agrees with the recent measurement from the LHCb experiment [R. Aaij $et~al.$, JHEP 1212, 125 (2012)]. Note added: after this paper was submitted for publication, LHCb announced a new measurement of the differential decay rate for this process [T. Tekampe, talk at DPF 2015], which we now compare to the shape and normalization of the Standard-Model prediction.

preprint2015arXiv

The $B \to D \ell ν$ form factors at nonzero recoil and $|V_{cb}|$ from $2+1$-flavor lattice QCD

We present the first unquenched lattice-QCD calculation of the hadronic form factors for the exclusive decay $\overline{B} \rightarrow D \ell \overlineν$ at nonzero recoil. We carry out numerical simulations on fourteen ensembles of gauge-field configurations generated with 2+1 flavors of asqtad-improved staggered sea quarks. The ensembles encompass a wide range of lattice spacings (approximately 0.045 to 0.12 fm) and ratios of light (up and down) to strange sea-quark masses ranging from 0.05 to 0.4. For the $b$ and $c$ valence quarks we use improved Wilson fermions with the Fermilab interpretation, while for the light valence quarks we use asqtad-improved staggered fermions. We extrapolate our results to the physical point using rooted staggered heavy-light meson chiral perturbation theory. We then parameterize the form factors and extend them to the full kinematic range using model-independent functions based on analyticity and unitarity. We present our final results for $f_+(q^2)$ and $f_0(q^2)$, including statistical and systematic errors, as coefficients of a series in the variable $z$ and the covariance matrix between these coefficients. We then fit the lattice form-factor data jointly with the experimentally measured differential decay rate from BaBar to determine the CKM matrix element, $|V_{cb}|=(39.6 \pm 1.7_{\rm QCD+exp} \pm 0.2_{\rm QED})\times 10^{-3}$. As a byproduct of the joint fit we obtain the form factors with improved precision at large recoil. Finally, we use them to update our calculation of the ratio $R(D)$ in the Standard Model, which yields $R(D) = 0.299(11)$.

preprint2014arXiv

Determination of $|V_{us}|$ from a lattice-QCD calculation of the $K\toπ\ellν$ semileptonic form factor with physical quark masses

We calculate the kaon semileptonic form factor $f_+(0)$ from lattice QCD, working, for the first time, at the physical light-quark masses. We use gauge configurations generated by the MILC collaboration with $N_f=2+1+1$ flavors of sea quarks, which incorporate the effects of dynamical charm quarks as well as those of up, down, and strange. We employ data at three lattice spacings to extrapolate to the continuum limit. Our result, $f_+(0) = 0.9704(32)$, where the error is the total statistical plus systematic uncertainty added in quadrature, is the most precise determination to date. Combining our result with the latest experimental measurements of $K$ semileptonic decays, one obtains the Cabibbo-Kobayashi-Maskawa matrix element $|V_{us}|=0.22290(74)(52)$, where the first error is from $f_+(0)$ and the second one is from experiment. In the first-row test of Cabibbo-Kobayashi-Maskawa unitarity, the error stemming from $|V_{us}|$ is now comparable to that from $|V_{ud}|$.

preprint2014arXiv

Dynamical QCD+QED simulation with staggered quarks

Electromagnetic effects play an important role in many phenomena such as isospin-symmetry breaking in the hadron spectrum and the hadronic contributions to g-2. We have generalized the MILC QCD code to include the electromagnetic field. In this work, we focus on simulations including charged sea quarks using the RHMC algorithm. We show details of the dynamical QCD+QED simulation algorithm with compact QED. We analyze the code performance and results for hadron-spectrum observables.

preprint2014arXiv

K semileptonic form factor with HISQ fermions at the physical point

We present results for the form factor $f_+^{K π}(0)$, needed to extract the CKM matrix element $|V_{us}|$ from experimental data on semileptonic $K$ decays, on the HISQ $N_f=2+1+1$ MILC configurations. The HISQ action is also used for the valence sector. The data set used for our final result includes three different values of the lattice spacing and data at the physical light quark masses. We discuss the error budget and how this calculation improves on our previous determination of $f_+^{K π}(0)$ on the asqtad $N_f=2+1$ MILC configurations.

preprint2014arXiv

Update of $|V_{cb}|$ from the $\bar{B}\to D^*\ell\barν$ form factor at zero recoil with three-flavor lattice QCD

We compute the zero-recoil form factor for the semileptonic decay $\bar{B}^0\to D^{*+}\ell^-\barν$ (and modes related by isospin and charge conjugation) using lattice QCD with three flavors of sea quarks. We use an improved staggered action for the light valence and sea quarks (the MILC \asqtad\ configurations), and the Fermilab action for the heavy quarks. Our calculations incorporate higher statistics, finer lattice spacings, and lighter quark masses than our 2008 work. As a byproduct of tuning the new data set, we obtain the $D_s$ and $B_s$ hyperfine splittings with few-MeV accuracy. For the zero-recoil form factor, we obtain $\mathcal{F}(1)=0.906(4)(12)$, where the first error is statistical and the second is the sum in quadrature of all systematic errors. With the latest HFAG average of experimental results and a cautious treatment of QED effects, we find $|V_{cb}| = (39.04 \pm 0.49_\text{expt} \pm 0.53_\text{QCD} \pm 0.19_\text{QED})\times10^{-3}$. The QCD error is now commensurate with the experimental error.

preprint2013arXiv

$B\toπ\ellν$ and $B\toπ\ell^+\ell^-$ semileptonic form factors from unquenched lattice QCD

We update the lattice calculation of the $B\toπ$ semileptonic form factors, which have important applications to the CKM matrix element $|V_{ub}|$ and the $B\toπ\ell^+\ell^-$ rare decay. We use MILC asqtad ensembles with $N_f=2+1$ sea quarks and over a range of lattice spacings $a \approx 0.045$--$0.12$ fm. We perform a combined chiral and continuum extrapolation of our lattice data using SU(2) staggered chiral perturbation theory in the hard pion limit. To extend the results for the form factors to the full kinematic range, we take a functional approach to parameterize the form factors using the Bourrely-Caprini-Lellouch formalism in a model-independent way. Our analysis is still blinded with an unknown off-set factor which will be disclosed when we present the final results.

preprint2013arXiv

Heavy-meson semileptonic decays for the Standard Model and beyond

We calculate the form factors for the semileptonic decays $B_s\to K\ellν$ and $B\to K\ell\ell$ with lattice QCD. We work at several lattice spacings and a range of light quark masses, using the MILC 2+1-flavor asqtad ensembles. We use the Fermilab method for the $b$ quark. We obtain chiral-continuum extrapolations for $E_K$ up to $\sim1.2$ GeV and then extend to the entire kinematic range with the model-independent $z$ expansion.

preprint2013arXiv

Kaon semileptonic vector form factor and determination of |V_{us}| using staggered fermions

Using staggered fermions and twisted boundary conditions, we calculate the K meson semileptonic decay vector form factor at zero momentum transfer. The HISQ formulation is used for the valence quarks, while the sea quarks are simulated with the asqtad action (MILC N_f=2+1 configurations). For the chiral and continuum extrapolation we use two-loop continuum CHPT, supplemented by partially quenched staggered CHPT at one loop. Our result is f_+^{Kπ}(0) = 0.9667+-0.0023+-0.0033, where the first error is statistical and the second is the sum in quadrature of the systematic uncertainties. This result is the first N_f=2+1 calculation with two lattice spacings and a controlled continuum extrapolation. It is also the most precise result to date for the vector form factor and, although the central value is larger than previous unquenched lattice calculations, it is compatible with them within errors. Combining our value for f_+^{Kπ}(0) with the latest experimental measurements of K semileptonic decays, we obtain |V_{us}| = 0.2238+-0.0009+-0.0005, where the first error is from f_+^{Kπ}(0) and the second one is experimental. As a byproduct of our calculation, we obtain the combination of low-energy constants [C_{12}^r+C_{34}^r-(L_5^r)^2](M_ρ) = (3.62+-1.00)x10^{-6}.

preprint2013arXiv

Lattice QCD ensembles with four flavors of highly improved staggered quarks

We present results from our simulations of quantum chromodynamics (QCD) with four flavors of quarks: u, d, s, and c. These simulations are performed with a one-loop Symanzik improved gauge action, and the highly improved staggered quark (HISQ) action. We are generating gauge configurations with four values of the lattice spacing ranging from 0.06 fm to 0.15 fm, and three values of the light quark mass, including the value for which the Goldstone pion mass is equal to the physical pion mass. We discuss simulation algorithms, scale setting, taste symmetry breaking, and the autocorrelations of various quantities. We also present results for the topological susceptibility which demonstrate the improvement of the HISQ configurations relative to those generated earlier with the asqtad improved staggered action.

preprint2013arXiv

Non-degenerate light quark masses from 2+1f lattice QCD+QED

We report on a calculation of the effects of isospin breaking in Lattice QCD+QED. This involves using Chiral Perturbation Theory with Electromagnetic corrections to find the renormalized, non-degenerate, light quark masses. The calculations are carried out on QCD ensembles generated by the RBC and UKQCD collaborations using Domain Wall Fermions and the Iwasaki and Iwasaki+DSDR Gauge Actions with unitary pion masses down to 170 MeV. Non-compact QED is treated in the quenched approximation. The simulations use a $32^3$ lattice size with $a^{-1}=2.28(3)$ GeV (Iwasaki) and 1.37(1) (Iwasaki+DSDR). This builds on previous work from the RBC/UKQCD collaboration with lattice spacing $a^{-1}=1.78(4)$ GeV.

preprint2012arXiv

B_s->D_s/B->D Semileptonic Form-Factor Ratios and Their Application to BR(B^0_s->μ^+μ^-)

We calculate form-factor ratios between the semileptonic decays \bar{B}->D^+\ell^-\barν and \bar{B}_s->D_s^+\ell^-\barν with lattice QCD. These ratios are a key theoretical input in a new strategy to determine the fragmentation fractions of the neutral B decays, which are needed for measurements of BR(B^0_s-> μ^+μ^-). We use the MILC ensembles of gauge configurations with 2+1 flavors of sea quarks at two lattice spacings of approximately 0.12 fm and 0.09 fm. We use the model-independent z-parametrization to extrapolate our simulation results at small recoil toward maximum recoil. Our results for the form-factor ratios are $f_0^{(s)}(M^2_π)/f_0^{(d)}(M^2_K) =1.046(44)_{stat.}(15)_{syst.}$ and $f_0^{(s)}(M^2_π)/f_0^{(d)}(M^2_π)=1.054(47)_{stat.}(17)_{syst.}$. In contrast to a QCD sum-rule calculation, no significant departure from U-spin (d<->s) symmetry is observed.

preprint2012arXiv

Full QED+QCD Low-Energy Constants through Reweighting

The effect of sea quark electromagnetic charge on meson masses is investigated, and first results for full QED+QCD low-energy constants are presented. The electromagnetic charge for sea quarks is incorporated in quenched QED+full QCD lattice simulations by a reweighting method. The reweighting factor, which connects quenched and unquenched QED, is estimated using a stochastic method on 2+1 flavor dynamical domain-wall quark ensembles.

preprint2012arXiv

Refining new-physics searches in B -> D tau nu decay with lattice QCD

The semileptonic decay channel B -> D tau nu is sensitive to the presence of a scalar current, such as that mediated by a charged-Higgs boson. Recently the BaBar experiment reported the first observation of the exclusive semileptonic decay B -> D tau nu, finding an approximately 2-sigma disagreement with the Standard-Model prediction for the ratio R(D)=BR(B->D tau nu)/BR(B->D l nu), where l=e,mu. We compute this ratio of branching fractions using hadronic form factors computed in unquenched lattice QCD and obtain R(D) = 0.316(12)(7), where the errors are statistical and total systematic, respectively. This result is the first Standard-Model calculation of R(D) from ab initio full QCD. Its error is smaller than that of previous estimates, primarily due to the reduced uncertainty in the scalar form factor f_0(q^2). Our determination of R(D) is approximately 1-sigma higher than previous estimates and, thus, reduces the tension with experiment. We also compute R(D) in models with electrically charged scalar exchange, such as the type II two-Higgs doublet model. Once again, our result is consistent with, but approximately 1-sigma higher than, previous estimates for phenomenologically relevant values of the scalar coupling in the type II model. As a byproduct of our calculation, we also present the Standard-Model prediction for the longitudinal polarization ratio P_L (D)= 0.325(4)(3).

preprint2011arXiv

Form factors for $B$ to $Kll$ semileptonic decay from three-flavor lattice QCD

We study the $B \to Kl^+l^-$ semileptonic decay process in three-flavor lattice QCD. We analyze several ensembles generated by the MILC collaboration at different lattice spacings and sea-quark masses. We use the asqtad improved staggered action for the light quarks and the clover action with the Fermilab interpretation for the heavy $b$ quark. We present preliminary results for the vector current induced form factors for a range of kaon energies. Our analysis includes chiral and continuum extrapolations based on SU(2) staggered χPT.

preprint2009arXiv

Isospin breaking in 2+1 flavor QCD+QED

The mass splittings in the pseudoscalar mesons are studied by combining 2+1 flavor domain wall fermion gauge configurations, generated by the RBC/UKQCD collaborations, and quenched, non-compact, lattice QED configurations. We extract the QED low energy constants in SU(3) partially quenched chiral perturbation theory, up to next-to-leading order, and determine the non-degenerate u, d and s quark masses. Systematic uncertainties due to chiral extrapolations are discussed. The chiral symmetry breaking of domain wall fermions on the lattice and its effect in partially quenched chiral perturbation theory, including QED effects, is also investigated.